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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0305500 |
| Transcript ID | LotjaGi5g1v0305500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor, putative; TAIR: AT5G51910.1 TCP family transcription factor; Swiss-Prot: sp|Q9LT89|TCP19_ARATH Transcription factor TCP19; TrEMBL-Plants: tr|A0A072VQN8|A0A072VQN8_MEDTR TCP family transcription factor; Found in the gene: LotjaGi5g1v0305500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62375166..62376867) extracted from Lotus japonicus Gifu genome v1.2.
GGGGCTCTCTTCCATTGTTAGGGTTTGTTTCTCTCTGTGTTTTTCTTCTTCTGTCCAAATTAAATTTACTACTTCATTTT TTTTATATAATTTTTTTTAATTCTTAAACCTCTCTTCTAATCTTCAATTAGTCTCTCTAATCTCTTTGCAGTGCCAGAAA TCTTCAAACAACAGTCAACTCTCATCAAAACCCTGCTTCAACCCACACAGTAAGCTTTCAAATAAAAATTAATAAATTTC ACTGCAAATGAATTTCACAAATTTGAAAATATTTTTGTATTTTTCATCTGGGTTTTGATCATATTTTTCTGGGTCTCTTG AATTTTTTATTTATTTTTGTATTTTTTTCATTCAGGATGGAAATGAATCCTACTCACAACGGTGGTTTCAGCGAAGGAGA AAACGGCACAAACAGTGCCGATATATCTCCCTCGGAGACGACGGTGGCAATGGTGGAACCGCCGGAACAGCCGCCAGAAA TGAAAGAAGAGCTCACGGAGACAGAGCATAGGCTGGTTGAGTCCTTTCCAACGGGTGTTATCACGGTGGCAGCCCCGGCG GCGAAGAAACCGTCGAAGGACCGTCACACGAAGGTGGAGGGACGTGGCCGGAGAATCCGAATGCCGGCGACGTGCGCCGC CAGAATCTTCCAGCTGACCCGGGAGCTAGGCCACAAGTCCGACGGTGAAACAATCCGGTGGCTGCTGGAGCAGGCGGAAC CGTCGATCATAGAAGCCACCGGCACCGGGACAGTCCCGGCCATCGCTGTATCAGTCGGTGGAACACTGAAGATTCCAACA TCTTCTCCGGCGAGGCCGGAGGGAGAAGACGACAACCCCAGGAAGCGAAGGAGGAGACCCTCCAACAGCGAGTTCATTGA CATTAAGGATCAAGCTTCAGTCTGCTCAGGGCTCGCACCGATTGCACAGACCGCTTACGGTGGCGCTGGCGGTGGATTAG TCCCTATGTGGCCGGTGGCTAACGGTGGCGGCGGCGGCGGGGGTAATCCAACAGGGCCTTACTTCATGTTCCCAAACACT GCAAACCAACCTCAGTATTGGGCCATACCCGCTAATACAGTGGGCCCGTTTTTCAATGTTGAAGGCAGACCCATTTCTGG TTTTGTTTCTGCTATGCAAATTGCTGAGGCTGCTTCTGCTAACTCCTCTTCTTCTACTTTTGCTCCTGCTTTGAGCTCAC CTACTACTGCTACTACTAGCTCTGCTGTTACTACCTCTTCTTCATCCACTCAGATGCTCAGGGATTTCTCTTTGGAGATT TATGACAAGAGAGAGTTGCAGTTTTTGGGTGGCTCTTCTGCTCATTCTGAATCACCTTCAACTTCCAACCCTTGAAATTT AATATCATATCAGAAAATGGCTTAGACTTTGACAAATTTTTTTGCTTCAATTTGGGAACAAAAGTATATAGGTAGTTTTT TGCTATCTTGGTATTTGTCTCTTTTTGGCTAATATAAGGAACACTTTTTGAAGCTTTTTAATTTTGCCTGCTGTGTATTG TTTTAATTTATTTATTTATGTTTTCTTTTATAAACACTCAGTAGCCGGTCATCCTTTACATGCCTCCAGATTTAGGATTT AGTCACAACTAAGCTCATCATCCCTCTTAGAGTATATTGTGTGGGATCAAATTCAAGAGTTCTTTGCATACTTAGTTTAC GTTGCCAACAGAGCTATCCTTC
CDS sequence (LotjaGi5g1v0305500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGAATCCTACTCACAACGGTGGTTTCAGCGAAGGAGAAAACGGCACAAACAGTGCCGATATATCTCCCTCGGA GACGACGGTGGCAATGGTGGAACCGCCGGAACAGCCGCCAGAAATGAAAGAAGAGCTCACGGAGACAGAGCATAGGCTGG TTGAGTCCTTTCCAACGGGTGTTATCACGGTGGCAGCCCCGGCGGCGAAGAAACCGTCGAAGGACCGTCACACGAAGGTG GAGGGACGTGGCCGGAGAATCCGAATGCCGGCGACGTGCGCCGCCAGAATCTTCCAGCTGACCCGGGAGCTAGGCCACAA GTCCGACGGTGAAACAATCCGGTGGCTGCTGGAGCAGGCGGAACCGTCGATCATAGAAGCCACCGGCACCGGGACAGTCC CGGCCATCGCTGTATCAGTCGGTGGAACACTGAAGATTCCAACATCTTCTCCGGCGAGGCCGGAGGGAGAAGACGACAAC CCCAGGAAGCGAAGGAGGAGACCCTCCAACAGCGAGTTCATTGACATTAAGGATCAAGCTTCAGTCTGCTCAGGGCTCGC ACCGATTGCACAGACCGCTTACGGTGGCGCTGGCGGTGGATTAGTCCCTATGTGGCCGGTGGCTAACGGTGGCGGCGGCG GCGGGGGTAATCCAACAGGGCCTTACTTCATGTTCCCAAACACTGCAAACCAACCTCAGTATTGGGCCATACCCGCTAAT ACAGTGGGCCCGTTTTTCAATGTTGAAGGCAGACCCATTTCTGGTTTTGTTTCTGCTATGCAAATTGCTGAGGCTGCTTC TGCTAACTCCTCTTCTTCTACTTTTGCTCCTGCTTTGAGCTCACCTACTACTGCTACTACTAGCTCTGCTGTTACTACCT CTTCTTCATCCACTCAGATGCTCAGGGATTTCTCTTTGGAGATTTATGACAAGAGAGAGTTGCAGTTTTTGGGTGGCTCT TCTGCTCATTCTGAATCACCTTCAACTTCCAACCCTTGA
Protein sequence (LotjaGi5g1v0305500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMNPTHNGGFSEGENGTNSADISPSETTVAMVEPPEQPPEMKEELTETEHRLVESFPTGVITVAAPAAKKPSKDRHTKV EGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVSVGGTLKIPTSSPARPEGEDDN PRKRRRRPSNSEFIDIKDQASVCSGLAPIAQTAYGGAGGGLVPMWPVANGGGGGGGNPTGPYFMFPNTANQPQYWAIPAN TVGPFFNVEGRPISGFVSAMQIAEAASANSSSSTFAPALSSPTTATTSSAVTTSSSSTQMLRDFSLEIYDKRELQFLGGS SAHSESPSTSNP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 15 | 331 | 317 | 2.3E-139 | – | |
| PANTHER | 15 | 331 | 317 | 2.3E-139 | ||
| ProSiteProfiles | 73 | 127 | 55 | 27.52 | ||
| Pfam | 73 | 142 | 70 | 4.4E-29 | ||
| MobiDBLite | 144 | 171 | 28 | - | – | |
| MobiDBLite | 155 | 171 | 17 | - | – | |
| MobiDBLite | 272 | 298 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi5g1v0305500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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