Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0306100.5

Overview

Field	Value
Gene ID	LotjaGi5g1v0306100
Transcript ID	LotjaGi5g1v0306100.5
Related isoforms 4	LotjaGi5g1v0306100.1 LotjaGi5g1v0306100.2 LotjaGi5g1v0306100.3 LotjaGi5g1v0306100.4
Lotus japonicus genome version	Gifu v1.2
Description	PfkB family carbohydrate kinase; TAIR: AT5G51830.1 pfkB-like carbohydrate kinase family protein; Swiss-Prot: sp\|Q9FLH8\|SCRK7_ARATH Probable fructokinase-7; TrEMBL-Plants: tr\|I1NGN6\|I1NGN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0306100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:62411331..62413956) extracted from Lotus japonicus Gifu genome v1.2.

GATTTTTTGAGCTAAAGATTGCATGCATCTTTGAAATTTCCCTGATATTGGGTTCCTGCTTTTGTTAAATTTATTTTCCG GGTGTAATTTCAATGACTGCATGCATAGAAATAAAATCATGATGTTGGGGTGATTGATGTGAAGATCTGATTGATTGAGT AATTTCTGTGTGCGTGTGTGTGATCTTGATTTAGGATTCTAGGCCAGGTGATTAGGATTATTTGTTTATACTGCATTGTT GCTAGTAAAATTCTTTGAGCCCAGGATTTGTGTTGGTCTAAAGCTTCTGCATTTTTTGTTCAGGTAAATCTGATGATCAC ACTAAAGAAGATTGCAAGGAAACAAGTGCATTGGTGGTTTGTTTTGGTGAATTGTTAATAGACTTTGTGCCAACAGTGGG TGGAGTGTCACTAGCTGAAGCACCTGCTTTCAAGAAAGCTCCTGGTGGTGCTCCTGCTAATGTGGCTGTTGGAATTTCAA GGTTGGGGGGTTCATCTGCATTCATTGGCAAGGTGCATTTTTCTATCTATCTATCACTGTTTATCCAGATGGTTCCTTTT GAGTTTCTTGTTACTCTCCCCATGTCTATCTATTCAAATTCTCATATGTAAAATATTTATCATGTTTACATTGTTTGAAA CTGATTAAAAATCTCTCAATAAGACTGTTCCTGTGACAGAAAAAAATTTGCTTGCTTGATCTACTAGATTAGAAAATCAT AAGTTAATTACGTGCCATCTATGTTTTAGGTTGGGGCAGATGAATTTGGGTATATGTTGGCTGATATTTTAAAGCAGAAT AATGTTGAGACGTCTGGCATGCGGTTTGATCCAGACGCAAGAACTGCATTAGCTTTTGTTACGCTTAGAGCTGATGGGGA GCGTGAGTTCTTGTTTTTCCGAAATCCTAGTGCAGATATGCTGCTTCATGAGTCAGAGCTTGATCAGAATCTCATAAAGA AGGTGTTTTGAACTTCTGTTTGTATTTATAAAACATGTTGCCCTAGTCCTTTGGTTTATGTTTTTATACTTGCAATGCTG ATTGCAGGCTAAAGTATTCCATTATGGTTCCATCAGCTTGATTGATGAACCATGCAAGCTAGCTCATCTTGCTGCTTTGA GAATCGCTAAAGAATCTGGCTGCATTCTTTCGTATGATCCGAATTTGAGGTTGGCTCTATGGCCATCAGCTGAGGCTGCT CGAAAAGGCATAATGAGCATATGGGATCAAGCCGATGTCATAAAGGTATAATTGTATGATCTAGTCAATACACATTGTTT AATTTAAAAAACAAATCATTATTCTGTTTCATTATTATGTGCAGATAAGTGAAGATGAGATCACATTTTTGACCTGTGGT GATGATCCTTATGATGATAATGTTGTATTAAAGAAGCTTTTTCATCCTAATCTCAAGCTTTTAATTGTTACTGAAGGGTC AGAGGGTTGTAGATATTACATAAAGGTAAGCTTGCCAAAGTCATTTAACTATGATTTCAATTGTCCAAATGGTTCTGTAA TCCCTTATTTCATCATTTTCTTTGTTCTCCCTGTGTTCTTGTATCAACATCAGTAACTCTAATGAGCAGGCTGAATTGTT TGTTATGAAATGTTTTGAATGTGAATCTACAAATTTGAACACCAATACAACTTGTTCTGATGTACTCAATGACTACTAGC AGCTTGCAAAACTGATACAATCTTTGCTTTAAGGTTCAATCGTTTCACATGTTTTTTCATTTGTCTAGTGCGTGATCAGT GTTCAGCTAATAGTAATTGCCAAATTTCTGTGCAGGAATTCAGGGGCAGGGTTACAGGTGTTACAGTTAAACCTGTTGAC ACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATCATCAACAGCATAGCTTCTGACCCAAGTCTTTTCCAGGTGCTTCA GAATTTTACACATTCTGGTTGTTGATTCAATTTTCCTGGCGCCATATGTATCTTATCAAACAAAATTTCATAAGCCCTAT TTTGGCTTAGCTCGTTTTCTGCTGTTGTTGCACCTGTATGTACTTAGTATCATTGATTAAGCATGCCTTTGAGTTGTTAA TTCTTGTTCTAGTGAGTTATTTGTTCAGAGGAAATTATGAATGTTCTATAATGTACCTAGTTTTTTGTTGTTCCTGCAAC ATGCATATTATGGAAGATATATCACTGAATCCAGTGGCATACTGCTTAGGTGCTCTGTCCAGGAATAGATAGAAGTTTTA GACAAAATTACCGATAATAAAAATGGTTCATTAATGTTCTAGAAATGTGAATTTATAATTACATATTTGCAAGCCAATAG AAATAATCTGAACTTTATGGTCATTTAGGAGACAGTACATGAAGATACAATGATTAGCTGTAGATTTGTAATTTTCCTTA GCTTATAGGATCTGCTATGTTCTCTTGTTAACATGATGTGCTGTATTAAGCTCTTCATCACTGTCCTTTAGAAGTTTATA CGTTTTGTTTTCTTTGGCAGGATGAGAAGCGTCTCCGAGAAGCTCTATATTTTGCCAATGTATGTGGTGCCATCACTGTA ACAGAGAGAGGGGCTATTCCAGCACTTCCTACAAAAGAAGCTGTCCTGCAATTTGCTGCAGTATAG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0306100.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGCTGATATTTTAAAGCAGAATAATGTTGAGACGTCTGGCATGCGGTTTGATCCAGACGCAAGAACTGCATTAGC TTTTGTTACGCTTAGAGCTGATGGGGAGCGTGAGTTCTTGTTTTTCCGAAATCCTAGTGCAGATATGCTGCTTCATGAGT CAGAGCTTGATCAGAATCTCATAAAGAAGGCTAAAGTATTCCATTATGGTTCCATCAGCTTGATTGATGAACCATGCAAG CTAGCTCATCTTGCTGCTTTGAGAATCGCTAAAGAATCTGGCTGCATTCTTTCGTATGATCCGAATTTGAGGTTGGCTCT ATGGCCATCAGCTGAGGCTGCTCGAAAAGGCATAATGAGCATATGGGATCAAGCCGATGTCATAAAGATAAGTGAAGATG AGATCACATTTTTGACCTGTGGTGATGATCCTTATGATGATAATGTTGTATTAAAGAAGCTTTTTCATCCTAATCTCAAG CTTTTAATTGTTACTGAAGGGTCAGAGGGTTGTAGATATTACATAAAGGAATTCAGGGGCAGGGTTACAGGTGTTACAGT TAAACCTGTTGACACAACTGGTGCTGGTGATGCATTTGTTAGTGGGATCATCAACAGCATAGCTTCTGACCCAAGTCTTT TCCAGGATGAGAAGCGTCTCCGAGAAGCTCTATATTTTGCCAATGTATGTGGTGCCATCACTGTAACAGAGAGAGGGGCT ATTCCAGCACTTCCTACAAAAGAAGCTGTCCTGCAATTTGCTGCAGTATAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0306100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLADILKQNNVETSGMRFDPDARTALAFVTLRADGEREFLFFRNPSADMLLHESELDQNLIKKAKVFHYGSISLIDEPCK LAHLAALRIAKESGCILSYDPNLRLALWPSAEAARKGIMSIWDQADVIKISEDEITFLTCGDDPYDDNVVLKKLFHPNLK LLIVTEGSEGCRYYIKEFRGRVTGVTVKPVDTTGAGDAFVSGIINSIASDPSLFQDEKRLREALYFANVCGAITVTERGA IPALPTKEAVLQFAAV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
CDD	cd01167 View details on cd01167 Search for proteins/transripts with this domain View external data on cd01167	1	241	241	5.05752E-95	–
PANTHER	PTHR43085:SF28 View details on PTHR43085:SF28 Search for proteins/transripts with this domain View external data on PTHR43085:SF28	1	255	255	3.2E-164	–
PANTHER	PTHR43085 View details on PTHR43085 Search for proteins/transripts with this domain View external data on PTHR43085	1	255	255	3.2E-164	–
Gene3D	G3DSA:3.40.1190.20 View details on G3DSA:3.40.1190.20 Search for proteins/transripts with this domain View external data on G3DSA:3.40.1190.20	1	256	256	2.2E-79	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00294 View details on PF00294 Search for proteins/transripts with this domain View external data on PF00294	2	246	245	1.2E-53	IPR011611 Show description in modal box View details on IPR011611 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53613 View details on SSF53613 Search for proteins/transripts with this domain View external data on SSF53613	2	253	252	2.03E-62	IPR029056 Show description in modal box View details on IPR029056 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00584 View details on PS00584 Search for proteins/transripts with this domain View external data on PS00584	191	204	14	-	IPR002173 Show description in modal box View details on IPR002173 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016773 View details of GO:0016773 AmiGO InterPro QuickGO	Molecular function	Phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).	Subterm of View details of GO:0016772

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0306100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…