Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0310800 |
| Transcript ID | LotjaGi5g1v0310800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epidermal patterning factor-like protein; TAIR: AT3G22820.1 allergen-like protein; Swiss-Prot: sp|Q9LUH9|EPFL5_ARATH EPIDERMAL PATTERNING FACTOR-like protein 5; TrEMBL-Plants: tr|I1LE16|I1LE16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0310800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62875117..62877043) extracted from Lotus japonicus Gifu genome v1.2.
TGAATATTTTTTGAGAAAGAAAAAAAAGGCAGCAATAGCATATATAGGTGAAAGTACCCCATACATGTGAGATATGTAAC ACAAACATTTGACAAATCAGAGGCTTTGTTTGAAACTAGTACAAGTCCTTCACACTGATTATTCACACACTCACTCACTT CATCAAGTTGCAACCCCACCCCTATCACAATCATCCTGAAGCCTTGTAGGGACCCATGCCCCCCACCCTTTGGGCCTTTT TCCCTAATACTCAAACAAAATCTCTCTCACTCCATCTCCTCTTTTGGGTTCCATATTCCCTTTCTCTTCTCTTTTGACTT GGACTTTCTTTCTTTCTCTCACTCTACCATCACACGCAACAACAACAACTGCATACACCTCACTGTTCTGCAACAATAAT ACCACACCCTCTTCTCTTCCCTTCAACACCCTCACTCTCATCTCACTCTCATTGTCCCTTGCTAACGTGCGCATTCCCAC CTCGGCGATGGTCATAATCCGTCACCTCCGCCGCCGCAAACACCACCAACACCATCACTGGTTGCAAGCCTTCACCACCT TCACATTCCTCTTTCTCTCCTCTGCTTCAGCCATGGCTACTCTCTCACCACAACCTAGTAAGTAAAAAACGAAGCAGATT AGTTTCTTAGGTCCAGAACTAAGTTTTCACGTTGCTTTTCCTTCTTTTTCAGGTGGTGGAGCAGTGAAGCATCCTTTCAG GGAGGAAAACGAAAATGGGTCGCAGTTTACTGCGGTGGCGGATCAGAAGAGACTCGGCGGACCAGGGTCATCGCCGCCGT CATGCAGATCCAAGTGCGGGTGGTGCAGCCCTTGCCAACCGGTTCATATTCCGGTTCAGCCTGGTTTGATCATACGCCTT GAGTACTACCCAGAAGCGTGGCGATGCAAGTGTGGGAACAAGCTTTTTATGCCTTAAACAATAGTAATGATAATGATGCA GCATAATCCTAGTACTGAAGAAAAGAAAAAAGAACACAAACATTGCCAGAACCGAACAGGGAAAACGGTAGCAGACAGCT ATCTTAAATTTTTCCCCTTTTGGGGGTTCTTCAGTGTTAGTGCCTATCATGCATTGATTATTGAGTACCACTACTACGTT TATAATATTGATTTTTGAGTTAACCTTTTGAGGGAGAAGGGACAAGAAGGGAACTTTGGGAATGTAAGATATTAAGGTGT GATTATCGAGAGGGAACATCTAATCTAAACCCTTCTCTGCTTTTTACACACCCTAGCTTCATATATTAATATGATTACCC TTTCTTTTTGTGTTTTTTTTTTGGTTTTATGTTTGTACCCTTTTTTTATAAGACAGTGAAATTATGTGTATGAAGGTTGT AATTATGATTAGCTTCTCTTTAGAACAATAGAGAATTTTCATTATTATTGTCTTTAAATTCTTCTTCTTCTTCTACTTCT TTGTTCTATGAATCTTTTTAATGTGTTAAGTTGAAAGCTTTAGTATAAGGAAGGTGCATCTTTGAATGGATTAGAAACAA CATGGTGAAGAAACTTTTGGGTCTGGTTCAACTTATTGATGTGTTTCCATGTACTTTTACAGGTTGAGGTTATTCTACAT CACTGTTTCAAACCATTTAGGTGTCTGAGTAGTATTCTTAGTTTTTCTTTGTTTGGTTCTTTGTACTGTTGGTTGGGGAA TTATTGTTACACGCTCACTCACTTGATCTGTGTCATCAGTCATCACTCTCTCCCTCTCTGTTTCTTCTCCTCTCTGCGGT ATTTAATTGTTTCCTCTATATTAATTTGTATTTATTTAGCAATCCTGAACCCCCTTTCCTTTTCCATTAAATGTGCACAA CTGCACATGCCAATAACAAAAGGAACACAGATAGGGCATTTGTTTACCTCAGGTGACTTGAGATTTAATGTGCATAAATG ACTCATT
CDS sequence (LotjaGi5g1v0310800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCATAATCCGTCACCTCCGCCGCCGCAAACACCACCAACACCATCACTGGTTGCAAGCCTTCACCACCTTCACATT CCTCTTTCTCTCCTCTGCTTCAGCCATGGCTACTCTCTCACCACAACCTAGTGGTGGAGCAGTGAAGCATCCTTTCAGGG AGGAAAACGAAAATGGGTCGCAGTTTACTGCGGTGGCGGATCAGAAGAGACTCGGCGGACCAGGGTCATCGCCGCCGTCA TGCAGATCCAAGTGCGGGTGGTGCAGCCCTTGCCAACCGGTTCATATTCCGGTTCAGCCTGGTTTGATCATACGCCTTGA GTACTACCCAGAAGCGTGGCGATGCAAGTGTGGGAACAAGCTTTTTATGCCTTAA
Protein sequence (LotjaGi5g1v0310800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVIIRHLRRRKHHQHHHWLQAFTTFTFLFLSSASAMATLSPQPSGGAVKHPFREENENGSQFTAVADQKRLGGPGSSPPS CRSKCGWCSPCQPVHIPVQPGLIIRLEYYPEAWRCKCGNKLFMP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| SignalP_EUK | 1 | 33 | 33 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 46 | 46 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 37 | 37 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| PANTHER | 11 | 124 | 114 | 2.2E-41 | ||
| PANTHER | 11 | 124 | 114 | 2.2E-41 | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| Phobius | 31 | 35 | 5 | - | – | |
| Phobius | 36 | 124 | 89 | - | – | |
| MobiDBLite | 40 | 80 | 41 | - | – | |
| Pfam | 74 | 124 | 51 | 1.9E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi5g1v0310800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…