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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0311300 |
| Transcript ID | LotjaGi5g1v0311300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S3a; TAIR: AT3G04840.1 Ribosomal protein S3Ae; Swiss-Prot: sp|Q8GTE3|RS3A_CICAR 40S ribosomal protein S3a; TrEMBL-Plants: tr|A0A151U6P5|A0A151U6P5_CAJCA 40S ribosomal protein S3a; Found in the gene: LotjaGi5g1v0311300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62930294..62933405) extracted from Lotus japonicus Gifu genome v1.2.
GGCCTGCCGGGCAAGATAGAGGAGAGCTTTTACAAGTTTATTTTTGGTCAAATTGGTCAATAGTTTTGACAAGTTAACTC CAATAAATCATAGGCCATAACTAACCACTAATGCATATAGGCCCAAGCCCATGTAACATTGGTCTCAGAGAAACCAAAAA AGGTGACAAACAAACAGAGTCGAAGATAACAATAGAGAAAAACGAGGTATATATAAGCGTATCAGCTTTAGGGTTTTGTG TACCATTGTATCTGCTTCTCTCAGCCGTTTTCTGCAGCCGGTGCTCTTCGCAGACAGTGAGCCATGGCCGTCGGCAAGAA CAAGCGTATCTCCAAGGGGAAGAAGGGAAGCAAGAAGAAAGCGTAAGCACCCCATTTTCATTACCCTTTCCAACCTTCAC TCTTTGCATTTTCATGTTCAAATCTGAGTTCTGTTTGGTTTGTTCTTGATGAATCTGCAGTTCTGATCCCTTTGCCAAGA AGGATTGGTATGATATCAAGGCTCCTTCTGTGTTCCAGGTCAAAAATGTTGGCAAAACCCTCGTCTCTCGTACTCAGGGT ACCAAGGTATTGCTACACCTCTATGCCATGCTTTCTAGAATGTAGAATGGGGGAGTAGGAATTGGATTTTTGATTACAAT TTGCTGGATTTACTTTGTGGGGGGTCTTCAATCTAAGAATGTTGTTTTGATCTGTATACATTTAGGTATGAGCAAATGCA TGTTTCATCTTATGGCTGAAAATGTTAATTTGCTGAACTGGTGTGTACTGAGAGAAGTTAAACAGAATGGTTGCTACCTA TTGCATTTTTGAATTACATTTTGTTGGCTTTACTTTGTGGGTCACTCAGGGTCTTCAATTGATGAATTTGGTTTTGATTT GTGTATGGTTAGGTATGTGCATATATATGTCTCCATTTTGGCTTGAGGACATTGTACTCTTTTTCTTGCTTTGATACATT TTATCTCATGGCTGAAATTTTTAATTTGCTGAACTGGTGTCTACTGAGTGAAGTTAAAGTAAAACAGTTTAGTAGGTCCC TTTTGTTTTTTTTTCCCTAGTTCTCTGTAGGATATGGGTAACATACCTATATGATGGTTGAAAGTGTGTAGATTGTATTT CGGTTCTACTGAAAAAAAGAATTTCTGAGATTTCCAAGGATTGCGGGTAGTTGATCGATTTCTGAGATTTCCAAGGATTG TGGGTAGTTGATTGATTTCATGTATGTGTGATTGGTTGTTGTGTCTTTTGTATGCTTATATAGATTGTGGTTTTGAATTA CAGATTGCTTCAGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCCGATCTTCAGGGCGATGAGGAACAAGCTTT CAGGAAGATCAGACTGAGAGCTGAAGATGTTCAAGGAAAGAATGTTCTGACCAATTTCTGGGTATGAGTTGCTCTGGCTT ATTTTGATCATTGTATTTGTCTTGCATTGTTCTTATCAAATTTCGTTTTTTTTCTTCAATCTTTAGGGAATGAACTTCAC TACTGACAAGCTGAGGTCACTGGTGCGAAAGTGGCAAACTCTGATTGAAGCCCATGTGGATGTGAAGACTACTGATAACT ACACATTGAGGATGTTCTGCATTGGATTTACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTATGCACAATCCAGC CAGATTAGACAGGTATGTACATAATGTTTGTTAGTTGCATACATTGGTTTGCTATCTATCTATTTAATTTTATTATAGTA GCATACGGTCAAAGGAATATGTTGTCTAGCTTGAGTTCCTTTTGCACTCTTCTATTTTAAGAAGAAATAAAAGGGTTTGT ACTAAGGATTATTCTGCATTGCTTCTGTAATACTCGATAGTAGTAGTAATTAAATTATACCTGTATCTTTTCAGATACGC AGGAAGATGAGGGAAATCATGACCAACCAGGCAACATCTTGTGATTTGAAGGAGTTGGTCCGCAAGTTCATTCCTGAGGT GATTGGGAAAGAGGTTGAGAAGGCAACAACTGGCATTTACCCTCTGCAGAATGTGTTTGTTCGTAAAGTCAAGATCCTGA AAGCTCCTAAGTTCGATCTTGGAAAATTGATGGAGGTACTTTTTGATATAGAATTTTTTTTTCCCATTTTCTCTGCATTA TTACCTCATGAAAAATATTTTATAATTTGGTTAGTCACTGATGCTGAGTTTTTGTATTCTTCGCCCAATTGGATGGATTT ACCTAGCTAATTTCAGCAAATTTGTTTGTTTGTTTTGGTTTTATCTGCATTTGATGAGTTGTTCTGTTTAAGATGAACAT AATTTTAGCATATTTGGTTCCTTTTTATTGTCTTCCCTTTGTGCTGTTTCCACATGTATGTTGACGATCAATGGATTGAT TTAATTCCTATGCTACTTGGTTCCTTGTAGGTTCACGGGGATTACTCAGAAGATGTTGGTACTAAGGTAGACAGACCTGC TGATGAAACCGTGGCTGAGGAACCCACTGAAATTGTTGGAGCTTGATTATGTGGTTTTAGTTATGCTTTAGGTCTGCTGT TACTTCTGCTTTTTTACTGAGAGTTAAGATTGAACTTCAGTCCTTTTCGACATTCCGGAAACCTTATTTGCTATCAATAT ATATCTGGATTTTCTTTTGAATTGATATGCTTATATCGATTTTGGAGACTAGCTCTGATCCTGTTGGAAATTAAAATTTG GTATTTAATCCTTGATTATTTCGGTCTATTTCTAATTACCCTATGTATTCTTAATACTTGTATGAAATATATCACTACTT TTAACTAAAAATTAAATATTTAAAGAAGAAATTTTATGTAGAATTTTAACTTCTAGTTGAGGTGGTAAACATGATTATGA ATGCCAAAAATGAGGCCGAGGGTCCTCATTTTTACACGCACGATTGCGTAAGCAAATAGCTTTTAACCATAGAGCCTCCC GTATCCTCTTCTGTCACAAGCTTCCCTCCATGTTACATTATCAAAGTCATTGTGTGATCCATCTACATTTTAAGAAATAC AAGCACTAGGATCAGACGATCAGTTAATCCAGCTAAAGGGGTTGCAATTCAAAATTAAGGGTTTTCCTCTTT
CDS sequence (LotjaGi5g1v0311300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTCGGCAAGAACAAGCGTATCTCCAAGGGGAAGAAGGGAAGCAAGAAGAAAGCTTCTGATCCCTTTGCCAAGAA GGATTGGTATGATATCAAGGCTCCTTCTGTGTTCCAGGTCAAAAATGTTGGCAAAACCCTCGTCTCTCGTACTCAGGGTA CCAAGATTGCTTCAGAAGGACTCAAACATAGAGTGTTTGAGGTCTCATTGGCCGATCTTCAGGGCGATGAGGAACAAGCT TTCAGGAAGATCAGACTGAGAGCTGAAGATGTTCAAGGAAAGAATGTTCTGACCAATTTCTGGGGAATGAACTTCACTAC TGACAAGCTGAGGTCACTGGTGCGAAAGTGGCAAACTCTGATTGAAGCCCATGTGGATGTGAAGACTACTGATAACTACA CATTGAGGATGTTCTGCATTGGATTTACCAAGAGAAGAGCTAACCAGGTGAAGAGAACCTGTTATGCACAATCCAGCCAG ATTAGACAGATACGCAGGAAGATGAGGGAAATCATGACCAACCAGGCAACATCTTGTGATTTGAAGGAGTTGGTCCGCAA GTTCATTCCTGAGGTGATTGGGAAAGAGGTTGAGAAGGCAACAACTGGCATTTACCCTCTGCAGAATGTGTTTGTTCGTA AAGTCAAGATCCTGAAAGCTCCTAAGTTCGATCTTGGAAAATTGATGGAGGTTCACGGGGATTACTCAGAAGATGTTGGT ACTAAGGTAGACAGACCTGCTGATGAAACCGTGGCTGAGGAACCCACTGAAATTGTTGGAGCTTGA
Protein sequence (LotjaGi5g1v0311300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVGKNKRISKGKKGSKKKASDPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEEQA FRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQ IRQIRRKMREIMTNQATSCDLKELVRKFIPEVIGKEVEKATTGIYPLQNVFVRKVKILKAPKFDLGKLMEVHGDYSEDVG TKVDRPADETVAEEPTEIVGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 261 | 261 | 8.2E-168 | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 261 | 261 | 8.2E-168 | – | |
| Hamap | 1 | 258 | 258 | 40.428 | ||
| Pfam | 15 | 221 | 207 | 7.6E-93 | ||
| SMART | 15 | 221 | 207 | 1.5E-138 | ||
| ProSitePatterns | 61 | 73 | 13 | - | ||
| MobiDBLite | 240 | 261 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0311300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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