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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0312600 |
| Transcript ID | LotjaGi5g1v0312600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | senescence-associated family protein (DUF581); TAIR: AT3G22550.1 NAD(P)H-quinone oxidoreductase subunit, putative (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|V7BCH2|V7BCH2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0312600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63062812..63065440) extracted from Lotus japonicus Gifu genome v1.2.
GCGGTAATAATAATAATTGAAGGTGAAAAAATAGACATAAATGCAAGGAATTGAAAGGGAGAAATAAAGGAAGCCAAAAG AAGGAACAAGAATACAAAAAACTCATCTTTGTTCTGGTGTCTGATAGCATGCACGTCTGGTCCTGTGATCATGACCACTG AGACTCTCTTTGCATGTCGTTTTTCACCCTCTTCGTGATTCTCTCTTCTCACAGAGGAGAAGAACGGAAGCCGAGAAACC CGGGGAAAAAGTGAAACCCCTCTCTCACTCTCACACTCTCACTCACTTTTTTTTTCACTTTCAATTTTCTATATTTGTTT CTGCAACTTTGTCACAGAGGTTTAAGATCACAGTGTTCTATTCATGGAAACTTACTTGCAATTCATTGTTTCTTGCTTTC AGTAGAACACTGGATTTCACTGCAGTTTTCCTCTTTCAAGCTGCTGATGATGTTTGCCTCGTTGAATCCATGGCAGTGTC TTTGTGAAACTCTTGTCCTTTCAGGTGATTTCTATAATCTAATCTCTCTCACGCATTTTCACAAACACTTGGAACACTGT TCTGAATTTCTGAGATTTTCTGTGTTTTGGTTTCACAGTGAGAGATCTAGAGTAATAGTTGGTGACAACAACAAGCTCTC ATCATGACAGATTCTGGGTCTTCATCATCTCCAGCTGAAAATCACAGGAAATCTGGTTCTTCTTTCTTCAATTCTCCAAG GTTGTTCACTAATCTGTCACCAAAAAGTTTCAATGAAGCTGAAACTATGATGAGTCCTACTTCCATACTCGACAGCAAAC CATTCTCTGGGTTGAAGAACCCGTTCTGGTGTGAATCAAACAGCCCCAGAACACCAGGGGGTGGTGAAGTCAAGCGTTGC TGGGAGAATTTGGACTCCAAAGGTGTTGGTCTTGGCCTTGTTGATGCTCTTGTTGATGATCACAAACATGGTGAAGTGAA TTCAAAATCTGAGAGCAGAATGGTTCTGTTTGGATCTCAGCTGAAGATTCAGATTCCTCCTCTAACACCCACACCAACTT TTTCCAGTGCTGATTTTGCCATCAAGACGAGGAATTCTCAGTTGGATTCTTCATCTGGAAGCTTTTCACTGTCTCCTATG GGGAAATATCCATCTGGGTGTGCCAATTCTCATCAAGTCTTCACTGGGTGTCTCTCTGCTAGTGAAATGGAGCTCTCTGA GGACTACACTCGTGTGACTTCGCATGGTCCTAACCCGAGAACTACTCACATATTTGATAATTGCATCATTGGGAGTAGTT GCTTTGGTGCTGGATCATGCTCTGCTGCTTCTGCCATGGAAAATGGGTGTTTTCCTCATCACACAAGCTATTATCCATCT GAGAGCTTTCTCAGCAACTGCTTTTACTGCAAAAAGAATCTTGGCCAGGGTAAAGACATCTACATGTACAGGTAATTTTG CTTATTCTTTATCCCCATGGATGATCAGATTTTGAGTGCTGATAATATCAGAATCAGAACTGTCAAGTTCTTTTTCTTTC TATCTATGAAATAAAATTTGGTTTGCATGTTGAATTTTACATCTGAATTAATAGATCATTTGGCTCATGTATGTTATGTG GTGTAAACTTTGTTAATATCTGGTCATCAAAGGGTAAAGTTATGTTTCTGCAGGAAATTGAATTAGATATCATGATTAAC AAGGCTGGCCTTAATTTATCTTGCTAATTTTTACTAAGAAATTCAGTATCATTTTGTCTTCTTAGGATCTTTGGCCTTGT CAATGGTTAATATAGCAAAAACCATTCCAATTTAGCTAACTCAAGGGGCTGTTTTGTATTGAAAATGATTCTCTAATTGT AATAAACAATGGCAATAAATTTTAGTTTGGAAGTGTGCTTTGATAGTATGTGTCTGATTAGAGTCATTCCTGAAAAGAAT GACTCAAAATGGAAGTGTGCTTTGATAGTGTGTGTCTGATTTGAGTCATTCCTGAAAAGAATGATAAAAGTTTCATATAG ATCTTCAATCTAATTGGATGATGTTGTTTTGCAGGGGTGAGAGGGCATTTTGCAGCCATGAATGCCGTTACCAGGGGATG CTGTTGGAGGAAGGGATGAGCAAATTGGAAGCTGAGGATTTTTATATGACTTAGTTAGTTCCAATCCCTTAGCTCCCCAT CCAAACAAAACCATTCAACTTTCCTCCAAATGTCTTAAGAATAATACACCCTCTTCATTTTTAGTTTTCTAGATTCATTT CTAGGACACAAAATAGTCCTTGGAAATCCTGGATCACTGTACCTGGTTTTGATCTTTCTTTCAGCTTCTCAACCTCTCTG AGATAAAGATGTGTAGAAGATAGAGATGAACTGAACTGAAAGGCTGAGATGCTGTTGAGGTGCTTTTGTTGAAATGATGA ATCATGGGATTGCTTTTGGCTTGTCAACAGTTTTTGTCTTGAATTGATTGCAATGATCATTATCTATGACTTCAGCTTGC ATTATCTTTGTTTATTTTTTATGAAAGTAATAATACTATAATGACGCACCTAGGACCAACTACATCATCTCAAGTAGATT CTTTATTTTTGCGTAATTTTTAATTTTTTTTTGTCCTTGTAGCACATTTACATACATGATGATAGGAGC
CDS sequence (LotjaGi5g1v0312600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGATTCTGGGTCTTCATCATCTCCAGCTGAAAATCACAGGAAATCTGGTTCTTCTTTCTTCAATTCTCCAAGGTT GTTCACTAATCTGTCACCAAAAAGTTTCAATGAAGCTGAAACTATGATGAGTCCTACTTCCATACTCGACAGCAAACCAT TCTCTGGGTTGAAGAACCCGTTCTGGTGTGAATCAAACAGCCCCAGAACACCAGGGGGTGGTGAAGTCAAGCGTTGCTGG GAGAATTTGGACTCCAAAGGTGTTGGTCTTGGCCTTGTTGATGCTCTTGTTGATGATCACAAACATGGTGAAGTGAATTC AAAATCTGAGAGCAGAATGGTTCTGTTTGGATCTCAGCTGAAGATTCAGATTCCTCCTCTAACACCCACACCAACTTTTT CCAGTGCTGATTTTGCCATCAAGACGAGGAATTCTCAGTTGGATTCTTCATCTGGAAGCTTTTCACTGTCTCCTATGGGG AAATATCCATCTGGGTGTGCCAATTCTCATCAAGTCTTCACTGGGTGTCTCTCTGCTAGTGAAATGGAGCTCTCTGAGGA CTACACTCGTGTGACTTCGCATGGTCCTAACCCGAGAACTACTCACATATTTGATAATTGCATCATTGGGAGTAGTTGCT TTGGTGCTGGATCATGCTCTGCTGCTTCTGCCATGGAAAATGGGTGTTTTCCTCATCACACAAGCTATTATCCATCTGAG AGCTTTCTCAGCAACTGCTTTTACTGCAAAAAGAATCTTGGCCAGGGTAAAGACATCTACATGTACAGGGGTGAGAGGGC ATTTTGCAGCCATGAATGCCGTTACCAGGGGATGCTGTTGGAGGAAGGGATGAGCAAATTGGAAGCTGAGGATTTTTATA TGACTTAG
Protein sequence (LotjaGi5g1v0312600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDSGSSSSPAENHRKSGSSFFNSPRLFTNLSPKSFNEAETMMSPTSILDSKPFSGLKNPFWCESNSPRTPGGGEVKRCW ENLDSKGVGLGLVDALVDDHKHGEVNSKSESRMVLFGSQLKIQIPPLTPTPTFSSADFAIKTRNSQLDSSSGSFSLSPMG KYPSGCANSHQVFTGCLSASEMELSEDYTRVTSHGPNPRTTHIFDNCIIGSSCFGAGSCSAASAMENGCFPHHTSYYPSE SFLSNCFYCKKNLGQGKDIYMYRGERAFCSHECRYQGMLLEEGMSKLEAEDFYMT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 2 | 286 | 285 | 1.1E-104 | – | |
| PANTHER | 2 | 286 | 285 | 1.1E-104 | – | |
| Pfam | 235 | 283 | 49 | 2.1E-22 | ||
| ProSiteProfiles | 241 | 285 | 45 | 24.033 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0312600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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