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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0313600 |
| Transcript ID | LotjaGi5g1v0313600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II protein; TAIR: AT1G05385.1 photosystem II 11 kDa protein-like protein; Swiss-Prot: sp|Q9ZVZ9|PB27B_ARATH Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic; TrEMBL-Plants: tr|I3SB38|I3SB38_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0313600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63201554..63204986) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAGATTTGGGTAAATTTTGTAAAAATGTTGTAAAGGGTATTTTTTAGATACATGCAAATCTAATGGCCATTTTAGC CTTCTCCCTTTGGATAGCCCCTATGTGGCGGTGCGAGCAGTGTTCGTTGAGGCAGAGATTCTTTGGAGTTGCACAGGTAA GAGAAGAAAAACACGCTTCCAAATGCAGTTGTTGCACTTATTTACTTGTACGTGGTTTTCAATTATTCCCTTAAGATTTT TACCCCCAAAGTTCAACCATTTTTGTTCAACAAACACCTGAAAATTTTGTGATTTTACTTGGGAATTTTGGGGCTGAATT TTTCAACTGTTCATTGCTGCACTTAGCCACTGGAAGTAAGTAGTATTGTCAACTTCTTCCTGGATTTTCGATTTGGATTT AACCCCCTGATATATGTACATGTATAAGTATTAGTGTCCAACTATGAATATTGTCATGGCAACACTGAAGAGACTTACTG AGGAGTGAGGAGACTTACCGCTATGTGTTGTGTACTCAGGGGATGTAGCTCAGCATTGTGGAAATTTATAAAGAAGAATG GCAAGTATCCTTGCAGCAAATATGAGTTCCATTACAAGTTCTAAAACAGTTGAAAGGATCAAAAGATTTGATATTCATGG TATGTTCTAACTACTTGAAACACTTTTTGCTCCCTCCCTTTCTTTTTTCAATTCTGTTTTTCCTCTTAAGAAAGTAATTT GCAACTTCGATTTTTCATAGTATATTTGTTGCTTCTATTAGCTTGTTTGCGTCAACTTCTCTTTCATCAGAATCAGTTCT GACCTCCGAAAGCTACTCATAGGAGTTTCTCCCTAGTATTGATTTTAAAATCGATTGTAGAAAGACAATGATTTAATCTG GTTAGAACTTAGAATGCATCAGAGAATTAAAAGAAAAAAGGAAAGAAAGTAGAATCAATAGCATTATAGCAACACTATAA TATGAGAGGGGGACAACATAATTGCACTGTCTAGGCATTCTCTGAAATCTGTCATTGCATTGCCTGCTTAGTCCATATTT GGAAACATTTCTACAATTGATTCTGAAGGCATTAATCAATTTTAGGGAGAAGTTTCTATGTGTAGGTTTTGAGTTTCAAA ATTGATTCTAATGAAAGAGGAGTTGATCCAAACATGATTTGCTTAGTAACAGCAGGTCCTCCATTTATTGACTGCTTCTG CAATATAACAGATAAACTGCAATTCAGGTCTAATATTGCACTGCCTCCTTTGGAGGCTTCATCGAGTCGCAGGCATCTTC TACTCAGTGTTGGCACTTCATTGGTTACCATGACCTGTGGTGGTTTATCACCATTAATGGCATCTGCTGAAGAGAATTCA GCTGACAAAGAGGATGATGATAAAGGAGTTGTTGGGGCCATCAAATCATTATTTGATCCTAATGAGAAATCAAAGTCTGG GAAAGTGTTGCCAAAGGCTTACTTGAAGTCAGCAAGAGAAGTAGTGAAAACGCTACGTGAATCGTTAAATGAAGTCCCTG ATGACAATGCCAAGTTTAGAAGAACTGCAGACGCAGCAAAGGAGTCAATTCGGGATTATTTGGGTGGTTGGAGGGGAAAT CAGGATGTTGCTCAAGAAGTATATACTTTTAACTGAAATCTTTTAAGACTCTCAAGCAATGAAATTCAATGTTTGAAATA GCATATTTGTGAGCATTTGTTGCAGATTACATTCATACCAATATATGATCATGCTGTGTTTGTTCCTTTTTTTTTTTTTT TTTCTGATAATGACTGGGTTTGTTCATTTCAGGAATCATATGATATGTTGGAGAAAGCAATCAGATCTTTGGCAAAGTTT TACTCAAGGGCAGGGCCATCAGCCCCATTGCCGGAGGAAGTGAAGACTGAAATATTAGATTATCTAAATACTGCTGAGGA ATTTTTGTAGGACACCTTTCTTTATGTTGTTGAAACAATAGTACCATTTCAAATTCCCTGAAACAATGGTATGTGAGTAA GCAAATTTATTATTGTATTTAACTTGTGTAGCAAAGAAATCAAACAAAAAAGAAGTGAATTTAACTTTTACTATTTCATG AGAATTTTATTTACCTAGTTTAGGTTTTGATTATTACCCCCTCCTTACCTCAATAAGAAAAAACTTGAGTCTCTTGCTTT ATGGACTCCATGATACAAGAAAAGATGACATGGGCCTTTTTCATCTTATGTTTTATTTCATTCTATTTACTGTCATCAGT GAATTCTAAATCCAATGCCCCCCGGGTTATGCATTGACCTTTCTATGCAATATTTTAAAATGAACTGGTGAAAGCAGCTG AACATATTTTTAATGGTATATATAGTAAAATGATAACTCACATAAAATTAGGTAAAAATAAAAACGATTCCAAACTGGTT CTGAACCGATTTGAATAAATTATGTGATCGAACCATCCAATTGAACCTTTTTTTTTACGGGCAATTGAACCTTTTATTAA TCTATAATAATTCTGAGACATGACTAATCATTGTCAACAAAACAAAGTAAATCCCACTAAATTTTTACAAAAATAAATGT ACGTATAAAATCACCAGGAAAATAATTTACTTCCAGAGTAAATGCACAACAATACTAGAGCCCAGTAACTTTATGACAAA TACTGGCATTTATCAGGGTCATTTTGGAGGCATATAATTTAAGAACTGTGGAGGTTCGCTCATATTATTAGCTCCAATCA TGCATATCGGCTGAAGATATTAACTACGTGACAGAACCCCTTTTGAACTGCACATAAAAAAGGTGGGTAAGATTAGATTC TGTAGAAAAATTGCAGATGTGAATGCAAGAGCATATGAGCAAACAAAACCCTGATATGTCAACTAATAAATTACACCTAG TATTACTAAATATGATGGCAGATATTCAAAAAGAGCATTCTGCTAGTCAACACACATTAAACTGCAATCAGCGTCTCATA AAGGAGTGGTAACTGTGACCTTTCAACAAGTAAAATTGATTATTCTATCCTCTGAAGATACAAACTGAACTTTTGATACT AGAGCAGAGATAATCTTGTTGTCAAGAGACAAGGACAAAAAAAGTAGATGGTTTTTAAGTAATACTAGCAGCAGAGTGAC CCAGGGAATAAATCTAATTCTCATCATCTTTGTATAAGAACAAGAAGCAGTTTCGAAGAGACCAGACCTTGGTACTGTTC CACGGCGACGTGGATCATGCTCTGTTGCTTGTCGAAGAGCCCTAGCAAAAGCTTTGAAGGTTGCCTCAATAATATGATGG GAATTTTTTCCAGCGAGCTGTGTTTCAAGGAATGCATATATATTGTGTTAAAAGGTTTTCAAAATTGAAATAAAGCCATC AGCTAGAAAAAGCATAAGCCCCAGAAAATTCAAGTTGGAACATGTGCTCAATGCATGAAGCAAATAGAAAGAT
CDS sequence (LotjaGi5g1v0313600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGTATCCTTGCAGCAAATATGAGTTCCATTACAAGTTCTAAAACAGTTGAAAGGATCAAAAGATTTGATATTCA TGATAAACTGCAATTCAGGTCTAATATTGCACTGCCTCCTTTGGAGGCTTCATCGAGTCGCAGGCATCTTCTACTCAGTG TTGGCACTTCATTGGTTACCATGACCTGTGGTGGTTTATCACCATTAATGGCATCTGCTGAAGAGAATTCAGCTGACAAA GAGGATGATGATAAAGGAGTTGTTGGGGCCATCAAATCATTATTTGATCCTAATGAGAAATCAAAGTCTGGGAAAGTGTT GCCAAAGGCTTACTTGAAGTCAGCAAGAGAAGTAGTGAAAACGCTACGTGAATCGTTAAATGAAGTCCCTGATGACAATG CCAAGTTTAGAAGAACTGCAGACGCAGCAAAGGAGTCAATTCGGGATTATTTGGGTGGTTGGAGGGGAAATCAGGATGTT GCTCAAGAAGAATCATATGATATGTTGGAGAAAGCAATCAGATCTTTGGCAAAGTTTTACTCAAGGGCAGGGCCATCAGC CCCATTGCCGGAGGAAGTGAAGACTGAAATATTAGATTATCTAAATACTGCTGAGGAATTTTTGTAG
Protein sequence (LotjaGi5g1v0313600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASILAANMSSITSSKTVERIKRFDIHDKLQFRSNIALPPLEASSSRRHLLLSVGTSLVTMTCGGLSPLMASAEENSADK EDDDKGVVGAIKSLFDPNEKSKSGKVLPKAYLKSAREVVKTLRESLNEVPDDNAKFRRTADAAKESIRDYLGGWRGNQDV AQEESYDMLEKAIRSLAKFYSRAGPSAPLPEEVKTEILDYLNTAEEFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 208 | 197 | 5.9E-81 | – | |
| PANTHER | 12 | 208 | 197 | 5.9E-81 | ||
| Pfam | 46 | 208 | 163 | 3.2E-52 | ||
| Hamap | 82 | 208 | 127 | 20.4 | ||
| Gene3D | 101 | 208 | 108 | 1.1E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosystem II assembly | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. |
Expression pattern of LotjaGi5g1v0313600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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