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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0313600 |
Transcript ID | LotjaGi5g1v0313600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Photosystem II Psb27 protein; TAIR: AT1G05385.1 photosystem II 11 kDa protein-like protein; Swiss-Prot: sp|Q9ZVZ9|PB27B_ARATH Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic; TrEMBL-Plants: tr|I3SB38|I3SB38_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0313600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63202770..63203483) extracted from Lotus japonicus Gifu genome v1.2.
CTGCAATTCAGGTCTAATATTGCACTGCCTCCTTTGGAGGCTTCATCGAGTCGCAGGCATCTTCTACTCAGTGTTGGCAC TTCATTGGTTACCATGACCTGTGGTGGTTTATCACCATTAATGGCATCTGCTGAAGAGAATTCAGCTGACAAAGAGGATG ATGATAAAGGAGTTGTTGGGGCCATCAAATCATTATTTGATCCTAATGAGAAATCAAAGTCTGGGAAAGTGTTGCCAAAG GCTTACTTGAAGTCAGCAAGAGAAGTAGTGAAAACGCTACGTGAATCGTTAAATGAAGTCCCTGATGACAATGCCAAGTT TAGAAGAACTGCAGACGCAGCAAAGGAGTCAATTCGGGATTATTTGGGTGGTTGGAGGGGAAATCAGGATGTTGCTCAAG AAGTATATACTTTTAACTGAAATCTTTTAAGACTCTCAAGCAATGAAATTCAATGTTTGAAATAGCATATTTGTGAGCAT TTGTTGCAGATTACATTCATACCAATATATGATCATGCTGTGTTTGTTCCTTTTTTTTTTTTTTTTTCTGATAATGACTG GGTTTGTTCATTTCAGGAATCATATGATATGTTGGAGAAAGCAATCAGATCTTTGGCAAAGTTTTACTCAAGGGCAGGGC CATCAGCCCCATTGCCGGAGGAAGTGAAGACTGAAATATTAGATTATCTAAATACTGCTGAGGAATTTTTGTAG
CDS sequence (LotjaGi5g1v0313600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCTGTGGTGGTTTATCACCATTAATGGCATCTGCTGAAGAGAATTCAGCTGACAAAGAGGATGATGATAAAGGAGT TGTTGGGGCCATCAAATCATTATTTGATCCTAATGAGAAATCAAAGTCTGGGAAAGTGTTGCCAAAGGCTTACTTGAAGT CAGCAAGAGAAGTAGTGAAAACGCTACGTGAATCGTTAAATGAAGTCCCTGATGACAATGCCAAGTTTAGAAGAACTGCA GACGCAGCAAAGGAGTCAATTCGGGATTATTTGGGTGGTTGGAGGGGAAATCAGGATGTTGCTCAAGAAGAATCATATGA TATGTTGGAGAAAGCAATCAGATCTTTGGCAAAGTTTTACTCAAGGGCAGGGCCATCAGCCCCATTGCCGGAGGAAGTGA AGACTGAAATATTAGATTATCTAAATACTGCTGAGGAATTTTTGTAG
Protein sequence (LotjaGi5g1v0313600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTCGGLSPLMASAEENSADKEDDDKGVVGAIKSLFDPNEKSKSGKVLPKAYLKSAREVVKTLRESLNEVPDDNAKFRRTA DAAKESIRDYLGGWRGNQDVAQEESYDMLEKAIRSLAKFYSRAGPSAPLPEEVKTEILDYLNTAEEFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 24 | 24 | - | – | |
PANTHER | 4 | 148 | 145 | 2.9E-76 | – | |
PANTHER | 4 | 148 | 145 | 2.9E-76 | ||
Hamap | 22 | 148 | 127 | 20.4 | ||
Pfam | 26 | 148 | 123 | 3.9E-49 | ||
Gene3D | 41 | 148 | 108 | 4.0E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Photosystem II assembly | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. |
Expression pattern of LotjaGi5g1v0313600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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