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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0315900 |
| Transcript ID | LotjaGi5g1v0315900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT4G19600.1 Cyclin family protein; Swiss-Prot: sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4; TrEMBL-Plants: tr|K7N3F6|K7N3F6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0315900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63375472..63383387) extracted from Lotus japonicus Gifu genome v1.2.
GGATTTATCATAGTCTGTTTTTTTGTAATTGTATTTATTTTTAAATAACGTCTAAAATTCGAAAATTTATTTTAGAGGAA AACTATAAAAATGATTATTATCTATTGAAGAATTATTATTGGTAATCTTAAAATGTAGGTGGAAACGTGGATCGGGCTGG ATTAATAGCAAGGTACCAACTACCAACCAGACCCAACCCAAACCAAACCAAACAAACTCATCCTTTTCAATCCTTGCCAT TTTAGATCAACAATCCTTCTTTCTTCGTTTTCTCACCTTCCCTTCCCTTTCCTCTCGTTTCAAACCCTAATTTCTCTTCC CCGTTCCAATTTCAAATCACCGATCTCAATTCACCAGATCGTCTTCGCTGCATACTCAGGTGTTCATCCAAATTCCGTTC TCTCTCAGTCAATTGGTTTCAATTTCTGATTGTTTAATTTCAAAAATCATGTTCGATCGGATCTGCTTCATCGATTTTCC AGCATCAAATTCTTCATGTTCTTGATTCTCTGTTGCATCGGATATACGATAAATATACAGAAATTGCGTTTGTTTTTGTT AATTTAGGGAAGACAAATTGGATATTCAATTCTGGTAGTTATTATGTTCCAGAGATGAATTTGCCATTAATTGAAGATTA GCCTATGATGAAATTGGATCTCGATTGTTGTGGTGGTTTATTGCATCATATGAACAATATTTGAATGGAAATATACAAGT GGTTTGTGATGAAATTATGTGTGCATGTAATTGTATTTCCATGTCTAATTATGTTGTGTTTACATGATTTCGCAGGAATT ATGTCTTTCGCGCGGAATTTTCAAGCGGAAGATCGTAGCTTATATGGTGCTTATTGGTACACCGATGATGTAAACAACTT TCGGAACACCAATAGGAAAAGAAGCCGGAACAATTACCACCAGGGGAATTATAACACTTACAATGGCCACCAGACAAAAT TTGGGGACTATGGTGGTAGCAACTTTAACTTTTACAATGTAGACCCTGCTAATTATGTCAACTATGGTGTTGTTCAGTCA TCTATGAAAAGGAGAAAAAACTCAGCAACTACTTGGGAAGAAGGCCAGAAATACTATCTTCCGTTTACAGTCCATGATAA TATCCCTTCGTCTGGTAGTTTTCAATCTCACCCGACGAGATCCAATGCTGATACTGATCCCTCTACGTCAGCTAGCGGCA AGCTTGACTGCTCTATATTTGACGATGATAAGCCGGTCTTTTTGTCAAGGGACGATATTGATAGAAACTCTCCATCGAGG AAAGATGGTATTGATGCACATCATGAGACGCACTTGCGGTACTCTTATTGTGCATTCCTTCAGAACCTTGGCATGCGGCT TGAGCTGTAAGACATACGTTACTGGCCACATAGTTATAGTTTTTTATGGATTGCTTTTCTGATTATATTATATTGTTAAA AAATGGATTCAATCTTTGCCTGAATCCTGAGACTATTTGGTACCAGCTAATACCGTAACATTTTCCTTTACAGGCCCCAA ACTACTATTGGGACGGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGCAGATCTCATGCTTGCCACGACAGATTTGTGAG TGTTTCATTGTGCTCTAGCTCTAAATTCATGTTTTGCTTTTCTTATTAAGTGCATCAATTAGAACCACAAGTCCACAACA TTGGCGGGATTTGTTCTACCACTAGAAATGCACTGAAATTTTGTTGCTGATCTATATGATTGAGCTAGTGTTTTACATTT CATTTAGATTATTTGTTCAATATAGTTTATTCCTTCATGTTGCACCTCTATACACAAGTTTTTTTTACTTAATTAATTAA TTTAATTTTTGCTGCAGTTGATTGCCACTGCTGCTCTTTTTCTTGCTGGAAAGTCAGAGGAAAGTCCACGTCCGCTGAAT AATGTATTGAGAGCGTCCAGTGAAGTATTACATAAACAAGATTTTGCATTGTTGTCCTACCGGCTTCCCGTTGTAAGTAC ACTTCAAACTACAGAGTTCTTTCCTCTTCTGCAATATGTTACCTGTGAAAGACATGCAATAAACACCCAATTAATGCCAG TTAAACTTTGATTGTAATGTTAATTTATAATTATACTAACATGTTTGGAAATATTTTACAGGATTGGTTTGAACAGTATC GGGAACGGTTGCTTGAGGCTGAACAGTTGATACTTACTACCCTAAATTTTGAACTCGGTGTGCAACATCCATATGCACCT CTTACCTCTGTTCTTACGAAATTAGGTCTAACAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGGTG AGTTTTCTTATTCTTAATACCTTCACTATTGCAGTAATGATGTTTGTTTGTAGCATTCATTTTGAGGACAAACTAGTTGG CTCAAATCGAGATTGTATGTGATGTTCTGAGCTGTTAACTGGTGTCCTCTTCAGGTATCCCATTTGTTGGTTCCGATTAG CCCCGTGTTATCTAACAAAGTGATTGGAATGAAAAAAACGTAGTCTAGGAAACAGGACATGGGGCATTTGGTGTTAAATC TCAACCAATTAGCATGAGGTCTGGAGATCTAGTGGCTGTGGAAAGATACCTTGGTGTCTCCCCTTCTAAGTTTTGGTTCA AGATAGTGTCGATTCTCTCAATATTTTGCTTTAGCGCAACTTCTGTGTGTAGCTATTCTGTCATGGGATATTGATTTTTT TGGCATGCATATAATTGCAGGATCATCACAAGATTAGCATGCAGGCTTGTATGATATTCTTAGCTGGCGGATTGATATGC TGTTCATGGAAAGTTTTGTTTTACATCTGAAGTTGAACTGCTGATGTCTATTGGATTGCTTTACTCTGAATATGTCCAAT GAACCTTTCTTTGGGCCACCTGAGAGCCCCAAGCCCCAACCCAGATTTTCTGTCTAACCCTCAATGCCGGTGTAGTTTAT GCCAATACCCATTAGTCAAATGTCAAAGGGGCTCTCTCTAATACTTCATAACTTGGGTGGAAGGAAGGTCATAGAAGTAA ATTGGCAGTAAGTAATAAAACGGCAAAAAGTAAAAAAAAAAATACAAGAAAAATAGGTAGATAGAAGCAAACAGTCTGAA AGTGATATATGGGCATAGTCTTTCACGGTCCTGAGCAAATTTTGGCTAATCATTATTCACTAATCAAAATGGGGCCTCTT AACTAGAGTCAATTGAACATGTAGAGGTGAATGGAGTTCTTTTCTGCTGCTGTTTTTTTTTTTCTTGACTAAATAATCTC TTCTGGTACTGTTTTTTATTTTTTTAAATGGAAGGGAAACCTTTACACTTGGTCTATAAGTTGATTTTTGAAAAACTTCC TGGGCATGAATCTGCTGATAAAACTCTATCTTTTGAAGTCTTTCCTATTTGTGGTTTTGCATGTGTCTTAATTTCCTCCA CAATTTTGACCACATTTAATGGATTGGTTTAGACATTTATATCCCTATGTGTCTTGAATTTGGATTTAATTTTGATCCAT TTTCAAAGCTTAAGTTTTTTCACATGTTTCCAGTCATTGATGGTTGATATATCGGGTAATGAGTTGGCTATGAAAACCAC CAAAGAAGTTGATGTGTGAAAAAGTATTGTATGATGTTCAAAATTTCAGACAATGTATCATTGTTTAACTATTTAAAATT TATTTTGGAAGACACTTTTAAACACTCTTCTGCACAATCCACGTGATTGGTCTACTTTCAGAAAAGTCAACACACTTGCC CATTTTTTTAAGAATGTGTTGACTTTATAAAAAATAAACTAATCACATGGAGTGTGTTGCTAGCATATCCCTAGTCAATT TATTTTAAATATTTTGCTTCTGCTGATATCATCTTTTAGACTTTACTGCTATCCAAATAGCCACTTGTTTTTTGCTCATT TGCATGGAATCCAATCTTGAAGTTTGTAATGGGAATGTAGAGTTTAAGGTTTGACTGACTTTCATTTGGAACACAAGAAA ACATTTAATTTATATACTCAAAATTGTAAGAATTGACTTCTATTTAGCAACGAGTTCTGTTTTAAAATTACTACTCTACT AAGGATCCACTCTTGATAGTTGGCATTATTGTCCATAATTTTCTAAGTCCATCCCCCTCTATGTGAACTAGGTTGCAGCC TAAATTACTAATGGTGTTGAAAATCTGAAATGGGAATCCATTAAGTAACATAGTTGTTTTACTTTTGAAGTAGATGCTTG GCTATTTTTTTTTTTGACTTACTGCTAATTTCCTGTGCTTTTTGGATGATGTGTAGTGCTTAATGTTTGCAGTCTTTCAC TCTTAGTAACAATAGCGATTCAAATTGTTCATTGAATAGTGCTTATGGACCTGCCAAAATAATTGGTTGTATCAATGTCA TTATTTATTTGTCTGCGTTCAACTAATGTTTGCACTAATTTTTTAGAAAATGTATTTATAGCAATTTTTTTTAGAGTAAA TGCATATGCTTTTTTTGTTTTATGCCCACAAACATTGTAGCCACATTATCTTATTAAATGTTGTACCTCACTTTATCCTC CCAAGATATTATTCGTGTCTTGTAGATTCAAGCTCTGTACTGAAGCTTATTCACATTTTGTTTTCATTCTTGACATCATT TGTTCTCTACTGCTTTTTTCTTTGGATGTCAGCATTAGTTCTTTGAAAATACCTGTGGTTGGAGTGGTTGATCTTCATGA AAATTAAATGGCTCAAATTTGAAATTGCCAATGTAAAATAATGGCTCATCATCTTCATGAAATGCCAACACTGATAGTAC CGACACTGCTGTCCATTTGTATGAATGGTCTGCCAAATTTGAATGGGTTATGCATAGAAAGAGATCCTGCTTCCTTATGA GTTAAATTGCTCAATGTGTAAAGGCCTTCTTAGTTGGATGGGTTGTATAGTGGCCCTCTTTACCCTTTCTTCCTTTGGAT TCAAAGACAATAGTGAACTTTCATTCCTTCAGAAAGTTTTGCTCAAATGCTATGGTGCTGTGTTATTACAAGCAGCCATT GTCCCGTTTACTCTTCTCTTGGATTTAATGATGAAATTGGACCTTCAGTGCTTCAGAACGTTCTGTACACCTACTGTGAA AATTATAATGTATTCCATTGTCATTTGCTTGACATTGAAGGATGAGAATGAAAATATGTCAAACTTTTTGTCTCATGTCC CTGTTTCATTTCAAAAAATAGTGCTAGACTGTTTAAACTTAGCTCAACATGTACTTCTCCTACTTTGACATCAGGAGGGG GTGTTCCATCACCCTGAAATGCCATTTACTGGTGAACCAAAAAAATTACCAGAATGTGATAGTTTTTCACCTCATACTGA AAGCAAACTTCATAAATTTGTCCTTTCTTCCATGCATACCAACTTTATAGAAAATACACACACTACTATTCTTTGTTACA AAACCGAGATGTTTTTTGCTTCAATTTTTTCTATTTTGCAAGTATATATCAATTTTCACCACCTTCCGATTTCTTGAAGT TCCACACTGAAGATTTTGAAATTTCAGTTTGCATCTGCATCAAAGATATTGATGGATTTTGAGAATTATTCTGTAGTTTG TGGAATAAGCTGCATTTTTTTGGCAAGTACTCCGAATTTCCAACATGCACTGTAGCAACACTCTCCAGGTCAAAATATTG AGAAGAGGTGGCAATGTAGCATTGGCATTAGCATTGAAAGATTTATTTGTTTGGACCGAGCAGCTTTCAAAGCATGCTTT TTCATTTTAATTGCACAAAATTCTGGAGTTTAAAGTCCCCACAGCAGAGTTGGGTCTGGAAGTCTGATAAATTCTCTAAA TGAGTGTAAAATAATGCTATAGTTTGGTACACTTATCAGCAATCCTGCACAGATTCTGGCATAGTATTCTTCCTGAGTTC CTGCTTTTATAGTTGGTAAGAAAAAGTTCATAATTTTATGCTTTCCACTTTGGTATGGATGTTTGATACTAATTGTATTA TTTAGTTCATATTATTCATTTTGATTGCTGACATGATATGTCATGGTGGGAAACATATGCTAAGTTGTTCAAGAATCTTC TGTTAGTGTTGCCTCGGATGGTTAGTTTGACAATTTATGTATCTCTCTGTGTTGAGCAATGCTGGGAATATTGGTATATG TCAGTGTATGGTTTTCTAAAGCTTTGAAATGTTGTGCAGGCTTCGCAGCTCTCTATGGCTTCAATTTAAACCCCATCATA TTGCAGCTGGAGCTTTATATCTTGCTGCCAAGTTTCTGAACATGGATGTTGCTGCACATGAGAATATCTGGCAGGAGTTC CAGACAACCCCCTCCGTTCTTCAAGGTACCATTCTTTCTCTGTTTTAATCATCAAGTAACAATGTTCGATTTATTATGTA TTCTAAATAGTTGGTTAAGTAAATAGATATATGAGTTGCAGTTTAGTAAGAATATGATTCACAAATATATATTTAATTAG GATAAATCATGCACAGTAAAAAATTTAGGAATCTTTTCCATCTCCCTCGTGTGATTTCATTTGACTCTGTTGTAGAATTT CTTTTTAATGTTGCCATTTTAGACTTGAAAGCTAGTGTTGGTTAGAAATTATAAAGAAGAGTAGTTTTATATCTTGTAAG CCCTTAACTTGTCAGAGGAAGTGTCTCGGGAATGGTCTGACTGAACTTGAGTGTTTATATTCTGCCTCAGTATATATTGA TATTGATTCCCACATTGATGCAGATGTCTCGAAGCAATTAATGGAGCTCTTCTAAGCTTGTGTTTGGACTTCTGTTAAAC TCAACAGGATTTACTGGGAACTCAACATGACATATTATAGCTTCTCTGTTAATATATTGGAATAGCTTTGTGTTTGATCC AAGTCCAAACCATTGTCTAAAATATTGCAAAATTATAGCATCCTTCATCCTTCTTAGTTTAGATTGAGGACCAATTTAAA ATGTTGCATACTGATGCTTGATAGGGAGAGTCACGGATCATCGGTGTGAAGGAAGGTTTATATATAGTTTGTTCAGTTAT AGGTTTAGAGGGTGTGGACCTCGAGTTTCTTAGTGTTTCAACTTCTTTGTGAATCCTCTGCTAAATGCGCTCATGCTTTG CATTCATTTTATACTAATGCTATCTGTTCTTAATGCCAATACAAGTATTACCAAACTGGCTTTTAAATAACTTCACATTG ATGGTATTTTAACAATTTTTTTTATTGACTCATTCTCTAAAGAAATATAGATTGTTTTAAATATTATTCATTTAACTCTT CCTTTTAAATAATAATAATGAATAATATTATATTATTAACATATTTTTTATTGACTCATTCTGAAAATAATTATAGATTG TTTTAAAGATTATTTATTTATATGACATTTAATTTTTCCTTTTAAATAATATTAATAAATAAGATTATATTATTGACGTT TCTCTTAATTAATATTATATCAATAGAGATTTTAAAAAATATCGTATCAATAAAAAATAGAAGTTGTTAGCTCTTTTAAA ATGACTAAATTGTCAACTTTTTTCTGGAAAAACGTAGAAGGTAATACGTATAAATAAATAGTAGTGTTTGTTAATTGTTA TTATTGAATGATTGATTTAAGTAATACATGTATGACTTCCTATAAGTAAAATATTGGATTTGAGTTGTGTGAATGGAGAA AATTCATGTTGATAAGCTAGTCCCACCACGACCACATTATGATTGTTCGCGGTTTCAATATAATTGTCTCTCTTGAAGAA TACATAAAAAAAAATAAAATAACATTGTTCATCTTATTCTTTTAGGATATCCTCCAATTCGTTCTATTTAAGACAAGAAA ATATGCGCTTTTCATTAGTTGCCGGCACCAAGACCTGAAATTCTTAGTATATCTCCCTTTTCCATCTAAAAACAAG
CDS sequence (LotjaGi5g1v0315900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCGCGCGGAATTTTCAAGCGGAAGATCGTAGCTTATATGGTGCTTATTGGTACACCGATGATGTAAACAACTT TCGGAACACCAATAGGAAAAGAAGCCGGAACAATTACCACCAGGGGAATTATAACACTTACAATGGCCACCAGACAAAAT TTGGGGACTATGGTGGTAGCAACTTTAACTTTTACAATGTAGACCCTGCTAATTATGTCAACTATGGTGTTGTTCAGTCA TCTATGAAAAGGAGAAAAAACTCAGCAACTACTTGGGAAGAAGGCCAGAAATACTATCTTCCGTTTACAGTCCATGATAA TATCCCTTCGTCTGGTAGTTTTCAATCTCACCCGACGAGATCCAATGCTGATACTGATCCCTCTACGTCAGCTAGCGGCA AGCTTGACTGCTCTATATTTGACGATGATAAGCCGGTCTTTTTGTCAAGGGACGATATTGATAGAAACTCTCCATCGAGG AAAGATGGTATTGATGCACATCATGAGACGCACTTGCGGTACTCTTATTGTGCATTCCTTCAGAACCTTGGCATGCGGCT TGAGCTGCCCCAAACTACTATTGGGACGGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGCAGATCTCATGCTTGCCACG ACAGATTTTTGATTGCCACTGCTGCTCTTTTTCTTGCTGGAAAGTCAGAGGAAAGTCCACGTCCGCTGAATAATGTATTG AGAGCGTCCAGTGAAGTATTACATAAACAAGATTTTGCATTGTTGTCCTACCGGCTTCCCGTTGATTGGTTTGAACAGTA TCGGGAACGGTTGCTTGAGGCTGAACAGTTGATACTTACTACCCTAAATTTTGAACTCGGTGTGCAACATCCATATGCAC CTCTTACCTCTGTTCTTACGAAATTAGGTCTAACAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGG TGA
Protein sequence (LotjaGi5g1v0315900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFARNFQAEDRSLYGAYWYTDDVNNFRNTNRKRSRNNYHQGNYNTYNGHQTKFGDYGGSNFNFYNVDPANYVNYGVVQS SMKRRKNSATTWEEGQKYYLPFTVHDNIPSSGSFQSHPTRSNADTDPSTSASGKLDCSIFDDDKPVFLSRDDIDRNSPSR KDGIDAHHETHLRYSYCAFLQNLGMRLELPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALFLAGKSEESPRPLNNVL RASSEVLHKQDFALLSYRLPVDWFEQYRERLLEAEQLILTTLNFELGVQHPYAPLTSVLTKLGLTKTVLVNLALNLVSEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 65 | 320 | 256 | 8.0E-122 | – | |
| PANTHER | 65 | 320 | 256 | 8.0E-122 | ||
| MobiDBLite | 110 | 137 | 28 | - | – | |
| MobiDBLite | 110 | 135 | 26 | - | – | |
| Gene3D | 129 | 312 | 184 | 3.5E-42 | – | |
| SUPERFAMILY | 146 | 288 | 143 | 2.55E-36 | ||
| Pfam | 156 | 286 | 131 | 3.7E-16 | ||
| CDD | 172 | 243 | 72 | 2.39212E-11 | ||
| SMART | 178 | 280 | 103 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0315900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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