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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0315900 |
Transcript ID | LotjaGi5g1v0315900.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cyclin family protein; TAIR: AT4G19600.1 Cyclin family protein; Swiss-Prot: sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4; TrEMBL-Plants: tr|K7N3F7|K7N3F7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0315900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63376242..63383074) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTCCCCGTTCCAATTTCAAATCACCGATCTCAATTCACCAGATCGTCTTCGCTGCATACTCAGGTGTTCATCCAAAT TCCGTTCTCTCTCAGTCAATTGGTTTCAATTTCTGATTGTTTAATTTCAAAAATCATGTTCGATCGGATCTGCTTCATCG ATTTTCCAGCATCAAATTCTTCATGTTCTTGATTCTCTGTTGCATCGGATATACGATAAATATACAGAAATTGCGTTTGT TTTTGTTAATTTAGGGAAGACAAATTGGATATTCAATTCTGGTAGTTATTATGTTCCAGAGATGAATTTGCCATTAATTG AAGATTAGCCTATGATGAAATTGGATCTCGATTGTTGTGGTGGTTTATTGCATCATATGAACAATATTTGAATGGAAATA TACAAGTGGTTTGTGATGAAATTATGTGTGCATGTAATTGTATTTCCATGTCTAATTATGTTGTGTTTACATGATTTCGC AGGAATTATGTCTTTCGCGCGGAATTTTCAAGCGGAAGATCGTAGCTTATATGGTGCTTATTGGTACACCGATGATGTAA ACAACTTTCGGAACACCAATAGGAAAAGAAGCCGGAACAATTACCACCAGGGGAATTATAACACTTACAATGGCCACCAG ACAAAATTTGGGGACTATGGTGGTAGCAACTTTAACTTTTACAATGTAGACCCTGCTAATTATGTCAACTATGGTGTTGT TCAGTCATCTATGAAAAGGAGAAAAAACTCAGCAACTACTTGGGAAGAAGGCCAGAAATACTATCTTCCGTTTACAGTCC ATGATAATATCCCTTCGTCTGGTAGTTTTCAATCTCACCCGACGAGATCCAATGCTGATACTGATCCCTCTACGTCAGCT AGCGGCAAGCTTGACTGCTCTATATTTGACGATGATAAGCCGGTCTTTTTGTCAAGGGACGATATTGATAGAAACTCTCC ATCGAGGAAAGATGGTATTGATGCACATCATGAGACGCACTTGCGGTACTCTTATTGTGCATTCCTTCAGAACCTTGGCA TGCGGCTTGAGCTGTAAGACATACGTTACTGGCCACATAGTTATAGTTTTTTATGGATTGCTTTTCTGATTATATTATAT TGTTAAAAAATGGATTCAATCTTTGCCTGAATCCTGAGACTATTTGGTACCAGCTAATACCGTAACATTTTCCTTTACAG GCCCCAAACTACTATTGGGACGGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGCAGATCTCATGCTTGCCACGACAGAT TTGTGAGTGTTTCATTGTGCTCTAGCTCTAAATTCATGTTTTGCTTTTCTTATTAAGTGCATCAATTAGAACCACAAGTC CACAACATTGGCGGGATTTGTTCTACCACTAGAAATGCACTGAAATTTTGTTGCTGATCTATATGATTGAGCTAGTGTTT TACATTTCATTTAGATTATTTGTTCAATATAGTTTATTCCTTCATGTTGCACCTCTATACACAAGTTTTTTTTACTTAAT TAATTAATTTAATTTTTGCTGCAGTTGATTGCCACTGCTGCTCTTTTTCTTGCTGGAAAGTCAGAGGAAAGTCCACGTCC GCTGAATAATGTATTGAGAGCGTCCAGTGAAGTATTACATAAACAAGATTTTGCATTGTTGTCCTACCGGCTTCCCGTTG TAAGTACACTTCAAACTACAGAGTTCTTTCCTCTTCTGCAATATGTTACCTGTGAAAGACATGCAATAAACACCCAATTA ATGCCAGTTAAACTTTGATTGTAATGTTAATTTATAATTATACTAACATGTTTGGAAATATTTTACAGGATTGGTTTGAA CAGTATCGGGAACGGTTGCTTGAGGCTGAACAGTTGATACTTACTACCCTAAATTTTGAACTCGGTGTGCAACATCCATA TGCACCTCTTACCTCTGTTCTTACGAAATTAGGTCTAACAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTG AAGGGTGAGTTTTCTTATTCTTAATACCTTCACTATTGCAGTAATGATGTTTGTTTGTAGCATTCATTTTGAGGACAAAC TAGTTGGCTCAAATCGAGATTGTATGTGATGTTCTGAGCTGTTAACTGGTGTCCTCTTCAGGTATCCCATTTGTTGGTTC CGATTAGCCCCGTGTTATCTAACAAAGTGATTGGAATGAAAAAAACGTAGTCTAGGAAACAGGACATGGGGCATTTGGTG TTAAATCTCAACCAATTAGCATGAGGTCTGGAGATCTAGTGGCTGTGGAAAGATACCTTGGTGTCTCCCCTTCTAAGTTT TGGTTCAAGATAGTGTCGATTCTCTCAATATTTTGCTTTAGCGCAACTTCTGTGTGTAGCTATTCTGTCATGGGATATTG ATTTTTTTGGCATGCATATAATTGCAGGATCATCACAAGATTAGCATGCAGGCTTGTATGATATTCTTAGCTGGCGGATT GATATGCTGTTCATGGAAAGTTTTGTTTTACATCTGAAGTTGAACTGCTGATGTCTATTGGATTGCTTTACTCTGAATAT GTCCAATGAACCTTTCTTTGGGCCACCTGAGAGCCCCAAGCCCCAACCCAGATTTTCTGTCTAACCCTCAATGCCGGTGT AGTTTATGCCAATACCCATTAGTCAAATGTCAAAGGGGCTCTCTCTAATACTTCATAACTTGGGTGGAAGGAAGGTCATA GAAGTAAATTGGCAGTAAGTAATAAAACGGCAAAAAGTAAAAAAAAAAATACAAGAAAAATAGGTAGATAGAAGCAAACA GTCTGAAAGTGATATATGGGCATAGTCTTTCACGGTCCTGAGCAAATTTTGGCTAATCATTATTCACTAATCAAAATGGG GCCTCTTAACTAGAGTCAATTGAACATGTAGAGGTGAATGGAGTTCTTTTCTGCTGCTGTTTTTTTTTTTCTTGACTAAA TAATCTCTTCTGGTACTGTTTTTTATTTTTTTAAATGGAAGGGAAACCTTTACACTTGGTCTATAAGTTGATTTTTGAAA AACTTCCTGGGCATGAATCTGCTGATAAAACTCTATCTTTTGAAGTCTTTCCTATTTGTGGTTTTGCATGTGTCTTAATT TCCTCCACAATTTTGACCACATTTAATGGATTGGTTTAGACATTTATATCCCTATGTGTCTTGAATTTGGATTTAATTTT GATCCATTTTCAAAGCTTAAGTTTTTTCACATGTTTCCAGTCATTGATGGTTGATATATCGGGTAATGAGTTGGCTATGA AAACCACCAAAGAAGTTGATGTGTGAAAAAGTATTGTATGATGTTCAAAATTTCAGACAATGTATCATTGTTTAACTATT TAAAATTTATTTTGGAAGACACTTTTAAACACTCTTCTGCACAATCCACGTGATTGGTCTACTTTCAGAAAAGTCAACAC ACTTGCCCATTTTTTTAAGAATGTGTTGACTTTATAAAAAATAAACTAATCACATGGAGTGTGTTGCTAGCATATCCCTA GTCAATTTATTTTAAATATTTTGCTTCTGCTGATATCATCTTTTAGACTTTACTGCTATCCAAATAGCCACTTGTTTTTT GCTCATTTGCATGGAATCCAATCTTGAAGTTTGTAATGGGAATGTAGAGTTTAAGGTTTGACTGACTTTCATTTGGAACA CAAGAAAACATTTAATTTATATACTCAAAATTGTAAGAATTGACTTCTATTTAGCAACGAGTTCTGTTTTAAAATTACTA CTCTACTAAGGATCCACTCTTGATAGTTGGCATTATTGTCCATAATTTTCTAAGTCCATCCCCCTCTATGTGAACTAGGT TGCAGCCTAAATTACTAATGGTGTTGAAAATCTGAAATGGGAATCCATTAAGTAACATAGTTGTTTTACTTTTGAAGTAG ATGCTTGGCTATTTTTTTTTTTGACTTACTGCTAATTTCCTGTGCTTTTTGGATGATGTGTAGTGCTTAATGTTTGCAGT CTTTCACTCTTAGTAACAATAGCGATTCAAATTGTTCATTGAATAGTGCTTATGGACCTGCCAAAATAATTGGTTGTATC AATGTCATTATTTATTTGTCTGCGTTCAACTAATGTTTGCACTAATTTTTTAGAAAATGTATTTATAGCAATTTTTTTTA GAGTAAATGCATATGCTTTTTTTGTTTTATGCCCACAAACATTGTAGCCACATTATCTTATTAAATGTTGTACCTCACTT TATCCTCCCAAGATATTATTCGTGTCTTGTAGATTCAAGCTCTGTACTGAAGCTTATTCACATTTTGTTTTCATTCTTGA CATCATTTGTTCTCTACTGCTTTTTTCTTTGGATGTCAGCATTAGTTCTTTGAAAATACCTGTGGTTGGAGTGGTTGATC TTCATGAAAATTAAATGGCTCAAATTTGAAATTGCCAATGTAAAATAATGGCTCATCATCTTCATGAAATGCCAACACTG ATAGTACCGACACTGCTGTCCATTTGTATGAATGGTCTGCCAAATTTGAATGGGTTATGCATAGAAAGAGATCCTGCTTC CTTATGAGTTAAATTGCTCAATGTGTAAAGGCCTTCTTAGTTGGATGGGTTGTATAGTGGCCCTCTTTACCCTTTCTTCC TTTGGATTCAAAGACAATAGTGAACTTTCATTCCTTCAGAAAGTTTTGCTCAAATGCTATGGTGCTGTGTTATTACAAGC AGCCATTGTCCCGTTTACTCTTCTCTTGGATTTAATGATGAAATTGGACCTTCAGTGCTTCAGAACGTTCTGTACACCTA CTGTGAAAATTATAATGTATTCCATTGTCATTTGCTTGACATTGAAGGATGAGAATGAAAATATGTCAAACTTTTTGTCT CATGTCCCTGTTTCATTTCAAAAAATAGTGCTAGACTGTTTAAACTTAGCTCAACATGTACTTCTCCTACTTTGACATCA GGAGGGGGTGTTCCATCACCCTGAAATGCCATTTACTGGTGAACCAAAAAAATTACCAGAATGTGATAGTTTTTCACCTC ATACTGAAAGCAAACTTCATAAATTTGTCCTTTCTTCCATGCATACCAACTTTATAGAAAATACACACACTACTATTCTT TGTTACAAAACCGAGATGTTTTTTGCTTCAATTTTTTCTATTTTGCAAGTATATATCAATTTTCACCACCTTCCGATTTC TTGAAGTTCCACACTGAAGATTTTGAAATTTCAGTTTGCATCTGCATCAAAGATATTGATGGATTTTGAGAATTATTCTG TAGTTTGTGGAATAAGCTGCATTTTTTTGGCAAGTACTCCGAATTTCCAACATGCACTGTAGCAACACTCTCCAGGTCAA AATATTGAGAAGAGGTGGCAATGTAGCATTGGCATTAGCATTGAAAGATTTATTTGTTTGGACCGAGCAGCTTTCAAAGC ATGCTTTTTCATTTTAATTGCACAAAATTCTGGAGTTTAAAGTCCCCACAGCAGAGTTGGGTCTGGAAGTCTGATAAATT CTCTAAATGAGTGTAAAATAATGCTATAGTTTGGTACACTTATCAGCAATCCTGCACAGATTCTGGCATAGTATTCTTCC TGAGTTCCTGCTTTTATAGTTGGTAAGAAAAAGTTCATAATTTTATGCTTTCCACTTTGGTATGGATGTTTGATACTAAT TGTATTATTTAGTTCATATTATTCATTTTGATTGCTGACATGATATGTCATGGTGGGAAACATATGCTAAGTTGTTCAAG AATCTTCTGTTAGTGTTGCCTCGGATGGTTAGTTTGACAATTTATGTATCTCTCTGTGTTGAGCAATGCTGGGAATATTG GTATATGTCAGTGTATGGTTTTCTAAAGCTTTGAAATGTTGTGCAGGCTTCGCAGCTCTCTATGGCTTCAATTTAAACCC CATCATATTGCAGCTGGAGCTTTATATCTTGCTGCCAAGTTTCTGAACATGGATGTTGCTGCACATGAGAATATCTGGCA GGAGTTCCAGACAACCCCCTCCGTTCTTCAAGGTACCATTCTTTCTCTGTTTTAATCATCAAGTAACAATGTTCGATTTA TTATGTATTCTAAATAGTTGGTTAAGTAAATAGATATATGAGTTGCAGTTTAGTAAGAATATGATTCACAAATATATATT TAATTAGGATAAATCATGCACAGTAAAAAATTTAGGAATCTTTTCCATCTCCCTCGTGTGATTTCATTTGACTCTGTTGT AGAATTTCTTTTTAATGTTGCCATTTTAGACTTGAAAGCTAGTGTTGGTTAGAAATTATAAAGAAGAGTAGTTTTATATC TTGTAAGCCCTTAACTTGTCAGAGGAAGTGTCTCGGGAATGGTCTGACTGAACTTGAGTGTTTATATTCTGCCTCAGTAT ATATTGATATTGATTCCCACATTGATGCAGATGTCTCGAAGCAATTAATGGAGCTCTTCTAAGCTTGTGTTTGGACTTCT GTTAAACTCAACAGGATTTACTGGGAACTCAACATGACATATTATAGCTTCTCTGTTAATATATTGGAATAGCTTTGTGT TTGATCCAAGTCCAAACCATTGTCTAAAATATTGCAAAATTATAGCATCCTTCATCCTTCTTAGTTTAGATTGAGGACCA ATTTAAAATGTTGCATACTGATGCTTGATAGGGAGAGTCACGGATCATCGGTGTGAAGGAAGGTTTATATATAGTTTGTT CAGTTATAGGTTTAGAGGGTGTGGACCTCGAGTTTCTTAGTGTTTCAACTTCTTTGTGAATCCTCTGCTAAATGCGCTCA TGCTTTGCATTCATTTTATACTAATGCTATCTG
CDS sequence (LotjaGi5g1v0315900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCGCGCGGAATTTTCAAGCGGAAGATCGTAGCTTATATGGTGCTTATTGGTACACCGATGATGTAAACAACTT TCGGAACACCAATAGGAAAAGAAGCCGGAACAATTACCACCAGGGGAATTATAACACTTACAATGGCCACCAGACAAAAT TTGGGGACTATGGTGGTAGCAACTTTAACTTTTACAATGTAGACCCTGCTAATTATGTCAACTATGGTGTTGTTCAGTCA TCTATGAAAAGGAGAAAAAACTCAGCAACTACTTGGGAAGAAGGCCAGAAATACTATCTTCCGTTTACAGTCCATGATAA TATCCCTTCGTCTGGTAGTTTTCAATCTCACCCGACGAGATCCAATGCTGATACTGATCCCTCTACGTCAGCTAGCGGCA AGCTTGACTGCTCTATATTTGACGATGATAAGCCGGTCTTTTTGTCAAGGGACGATATTGATAGAAACTCTCCATCGAGG AAAGATGGTATTGATGCACATCATGAGACGCACTTGCGGTACTCTTATTGTGCATTCCTTCAGAACCTTGGCATGCGGCT TGAGCTGCCCCAAACTACTATTGGGACGGCCATGGTTCTGTGCCACCGGTTTTTTGTTCGCAGATCTCATGCTTGCCACG ACAGATTTTTGATTGCCACTGCTGCTCTTTTTCTTGCTGGAAAGTCAGAGGAAAGTCCACGTCCGCTGAATAATGTATTG AGAGCGTCCAGTGAAGTATTACATAAACAAGATTTTGCATTGTTGTCCTACCGGCTTCCCGTTGATTGGTTTGAACAGTA TCGGGAACGGTTGCTTGAGGCTGAACAGTTGATACTTACTACCCTAAATTTTGAACTCGGTGTGCAACATCCATATGCAC CTCTTACCTCTGTTCTTACGAAATTAGGTCTAACAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGG ATCATCACAAGATTAGCATGCAGGCTTGTATGA
Protein sequence (LotjaGi5g1v0315900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFARNFQAEDRSLYGAYWYTDDVNNFRNTNRKRSRNNYHQGNYNTYNGHQTKFGDYGGSNFNFYNVDPANYVNYGVVQS SMKRRKNSATTWEEGQKYYLPFTVHDNIPSSGSFQSHPTRSNADTDPSTSASGKLDCSIFDDDKPVFLSRDDIDRNSPSR KDGIDAHHETHLRYSYCAFLQNLGMRLELPQTTIGTAMVLCHRFFVRRSHACHDRFLIATAALFLAGKSEESPRPLNNVL RASSEVLHKQDFALLSYRLPVDWFEQYRERLLEAEQLILTTLNFELGVQHPYAPLTSVLTKLGLTKTVLVNLALNLVSEG IITRLACRLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 65 | 323 | 259 | 2.0E-122 | – | |
PANTHER | 65 | 323 | 259 | 2.0E-122 | ||
MobiDBLite | 110 | 137 | 28 | - | – | |
MobiDBLite | 110 | 135 | 26 | - | – | |
Gene3D | 130 | 312 | 183 | 3.8E-42 | – | |
SUPERFAMILY | 146 | 288 | 143 | 2.77E-36 | ||
Pfam | 156 | 286 | 131 | 3.9E-16 | ||
CDD | 172 | 243 | 72 | 4.12853E-11 | ||
SMART | 178 | 280 | 103 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0315900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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