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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0321800 |
| Transcript ID | LotjaGi5g1v0321800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain protein; TAIR: AT1G10200.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q94JX5|WLIM1_ARATH LIM domain-containing protein WLIM1; TrEMBL-Plants: tr|A0A151U7K2|A0A151U7K2_CAJCA Pollen-specific protein SF3; Found in the gene: LotjaGi5g1v0321800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64054994..64056610) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTAGTTTTGCAGGAACCACACAAAAGTGCATGGCTTGTAACAAAACAGTCTACCTGGTTGACAAGCTAACCGCAGA TGGCAGAATCTATCATAAAGCATGCTTCCGATGCCACCATTGCCAGAACACCCTTAAGGTATGACTATATACCAATATAT GTCTGTGTTTGGGTAAACAGCTTATCAAGCGCTTATGATCCATTAGCGCGTATTGCATAACAATTCAATCATAAGTTAGT TTGAGAAGCTTGTTTAAGCATTTATTCATAAGCTAATTTGAACAACTTATGAAAATAAGCTCAAAACAGCTGATATGTAG GTCATATGATGTTTACATATAAGATAAGTTCAAATAAACTACTCCTATCATGTCCTATATTGCTTTCATCCCTCAATTCT AAAGTCCCTAAATACATGTAAGCTTATTGAAGAGTTCACTACATTACCATTCTTAAAAGTTTGTTGTACTATGTACTGAT TTTGTTAAAGTTAAATTCGTTTGACTAAACTTACAAAATGAGACTGAATTAAGTCCATTTTTGTTAAAAGAACAAGTCTC TACCCACTACAATTGTTACTAAACCAATGATCCTTAAAAATATATATAAATTTGTTGTAACTCTGTTTGCAGCTCGGCAA CTTTTGTTCTTTTGAGGGTGTACTCTACTGCAGACCTCACTATGATCAACTCTACAAGCGAACTGGGCGCCTTGACAAAA GCTTTGAAGGTATAATTGACTTATTAACCAGAAACAGAAATTCCAAGAGACAAAATCAATTCTGACAACATTGATCCAAA CAATCATTGAGTGATTAACATTTTTGTTTTTGTTGCCTCTGCTTTCATTATCACAGGAACGCCTAAAATTCAGAAACCAG AAAGACAGATCACTGATAATGAGGTGATTTTTCTGTAGCTTTTCTTACCATGCAAATATCATGTTATGTAAACATTCTTC AATATATTACAGTATTTGAACAAAAATTTCCAAGTTTGCTGTTTAGTAGTAAATATGCTTCATTTATCATGCAAAGTTTG TCATTTCCATTGTTTCAGAATTTACTTAATCTTTGTTCAATTTTCCTCAGAATGCCAAAGTGCTAGCAAACGTGTTCTTG GGCACCAGAGACAAATGTGTTGGTTGCAATAAGACAGTTTATCCAACTGAGAGGGTAACCAGTTAATTAGCATTTTTCAT TGAATGATTTATTACATCTCCTCCTAATTATTAATACTAATAATGTCATTTTTGCTATTCTATTAAAGGTTACTGTAAAT AAGACTCCCTACCACAAAAGCTGCTTCAAATGTACCCGCGGCGGTTGTACTATAAGCTCATCAAATTTTGTTACCCATGA TGGAAAGCTCTACTGCAAACACCATCACATTCAACTTTTCAAAGAGAAAGGAAATTACAGTCAGCTTGAGAATGAAGGTG CTGTCACAGAAATTGCTGCTTAATGTGAAGAGATGGTTGCAGTTTTATACGATGGGTGCTCCAAATTCATTATGTTGCAA TGGAGTTTTTGCTTGTGAACTAAATGTTAATGAGACAGGCACAAAATGTTTTCAACAGTTAACCCAACTCTAGTGTATTT GGAGTTTTCAAGCCGAG
CDS sequence (LotjaGi5g1v0321800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGTTTTGCAGGAACCACACAAAAGTGCATGGCTTGTAACAAAACAGTCTACCTGGTTGACAAGCTAACCGCAGA TGGCAGAATCTATCATAAAGCATGCTTCCGATGCCACCATTGCCAGAACACCCTTAAGCTCGGCAACTTTTGTTCTTTTG AGGGTGTACTCTACTGCAGACCTCACTATGATCAACTCTACAAGCGAACTGGGCGCCTTGACAAAAGCTTTGAAGGAACG CCTAAAATTCAGAAACCAGAAAGACAGATCACTGATAATGAGAATGCCAAAGTGCTAGCAAACGTGTTCTTGGGCACCAG AGACAAATGTGTTGGTTGCAATAAGACAGTTTATCCAACTGAGAGGGTTACTGTAAATAAGACTCCCTACCACAAAAGCT GCTTCAAATGTACCCGCGGCGGTTGTACTATAAGCTCATCAAATTTTGTTACCCATGATGGAAAGCTCTACTGCAAACAC CATCACATTCAACTTTTCAAAGAGAAAGGAAATTACAGTCAGCTTGAGAATGAAGGTGCTGTCACAGAAATTGCTGCTTA A
Protein sequence (LotjaGi5g1v0321800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFAGTTQKCMACNKTVYLVDKLTADGRIYHKACFRCHHCQNTLKLGNFCSFEGVLYCRPHYDQLYKRTGRLDKSFEGT PKIQKPERQITDNENAKVLANVFLGTRDKCVGCNKTVYPTERVTVNKTPYHKSCFKCTRGGCTISSSNFVTHDGKLYCKH HHIQLFKEKGNYSQLENEGAVTEIAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 6.1E-109 | – | |
| PANTHER | 1 | 183 | 183 | 6.1E-109 | – | |
| SUPERFAMILY | 3 | 36 | 34 | 6.99E-10 | – | |
| Gene3D | 5 | 75 | 71 | 1.3E-19 | – | |
| ProSiteProfiles | 9 | 69 | 61 | 13.593 | ||
| SMART | 10 | 62 | 53 | 2.3E-11 | ||
| Pfam | 11 | 65 | 55 | 6.2E-11 | ||
| ProSitePatterns | 11 | 45 | 35 | - | ||
| SUPERFAMILY | 37 | 77 | 41 | 1.35E-12 | – | |
| SUPERFAMILY | 102 | 135 | 34 | 1.43E-9 | – | |
| Gene3D | 105 | 174 | 70 | 8.2E-20 | – | |
| ProSiteProfiles | 108 | 168 | 61 | 12.92 | ||
| SMART | 109 | 161 | 53 | 5.0E-15 | ||
| Pfam | 110 | 165 | 56 | 1.3E-12 | ||
| SUPERFAMILY | 136 | 175 | 40 | 2.33E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0321800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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