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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0323100 |
| Transcript ID | LotjaGi5g1v0323100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT1G27730.1 salt tolerance zinc finger; Swiss-Prot: sp|Q96289|ZAT10_ARATH Zinc finger protein ZAT10; TrEMBL-Plants: tr|I1NG21|I1NG21_SOYBN C2H2-Zn transcription factor; Found in the gene: LotjaGi5g1v0323100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64152156..64153815) extracted from Lotus japonicus Gifu genome v1.2.
CCATGTTTGTTTGTACGTGTTTAGTTTCGTAGATAAGTGAAGTCCTTTTTCCTTCTCTCTCTCTCTCTCATCTTTAGTTG ACCGACTTCACTTCTTTCTTTCTGTTTTCCCTCACACCAAGTCACCAACTCAATCACTATTTCCCTTCCCTTCTTTTCAC TCTCACACGCACCAAACCAAATCAATCCCCTATATAAACAAACCCCCTCACCACTTTCTCATCCACTCACTCCAACACAC AACAACAACAACAACCAAACACCTCACTCAATTTTCTCAAACCACCACTCTCTCTAATGGCCTTAGAGACTTTGAATTCA CCCACCGCAGCCACCACTCCCTTCCGGAGTAGCTACCAACAAGAGGAGGAGGAGGAGGAGGAGCTTCACCACCATGAGCC TTGGACCAAAAAAAAGCGCTCCAAACGACCTCGTTTCGACAACCCAACAACAACAGAAGAAGAGTACCTCGCTCTCTGCC TCATCATGCTTGCACAAAGTGGCAACAACAACAACAAAAACAACAACACAGACAATAACACAAACACCTTGCGCGCAGAA TCATCATCCAATTCACAGTCACAATCGCCGCCGCAACAACAACCGCCGCTGAAACTTACTCACAAGTGCAGCGTGTGTGA CAAGGCGTTCCCTTCTTACCAAGCACTCGGCGGCCACAAAGCAAGCCACCGCAAATCCTCATCGGAAAATCAAACTCCCG CCGCCGCCGCCGTCAACGACAACGCTTCCGTGTCGACATCCACCGGTAACGGCGGAAAGATGCACGAGTGTTCAATCTGT CACAAGAGCTTCCCAACCGGCCAAGCACTCGGCGGTCACAAGCGGTGCCACTACGAAGGCGGCAAGAGCAGCAACAGTAC CAACAGCAACGTCCACGCAAATACCAGCAGCGCCGTCACGACTACCTCCGACGGCGGCGCCGCCTCGGCACACAGCCTCC GTGGATTTGATCTGAACCTCCCCGCGCCGCTGACGGAATTCTGGACGCCACTGGGGATCGGCGGCGGAGATTCCAGGACG AACAAGATCCGAAGCGGTGAGCAGGAGGTGGAGAGCCCTCTGCCGGTAACCGCCAAGAGGCCGCGGTTGTTTTTCGATGG TGGTGAAACGGCGTAGCTTTGTTCAGTTTCAGATGATGGATTTTAATTTTAATTTAATTTAATTGGATTGAATTTGTTGT TATGGGTCAGGGCCAATTGGGATTAGGTTCAGATTTTGTTTGTTTTCAGTTTCACTCTTTCTCTGTACAGACAAAATTTG TTCATTGTTTTTAGACTCTCTTCTTACTCATCAATTCAATCTAACATATTTTATTTTTTCAGTTTCAATTCCACATATAT ACATTCACTTCTTACCCTATTTCAATATATCTAAGTTACATAATAAAATTCAATTTATATATATTTTTTAATAGATATCA TTCAGAAATCGAATCATCAATTAGATGTTTTATCAGTTGTGCTAGTACTTTAATTAGTTGTGGTTGTACTTAGTTTCAAG TACAAATTGCAGAATGTAAAAACAGAATTTGGACTATGTGAAATGTGGTAAAGATGAGAAAAAAGTGATATATACACAAG TAGATTTATAAAATTTGGCATTTTGTACATAAATATTTACATATTTGATTTCCAAATTCA
CDS sequence (LotjaGi5g1v0323100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTAGAGACTTTGAATTCACCCACCGCAGCCACCACTCCCTTCCGGAGTAGCTACCAACAAGAGGAGGAGGAGGA GGAGGAGCTTCACCACCATGAGCCTTGGACCAAAAAAAAGCGCTCCAAACGACCTCGTTTCGACAACCCAACAACAACAG AAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTTGCACAAAGTGGCAACAACAACAACAAAAACAACAACACAGACAAT AACACAAACACCTTGCGCGCAGAATCATCATCCAATTCACAGTCACAATCGCCGCCGCAACAACAACCGCCGCTGAAACT TACTCACAAGTGCAGCGTGTGTGACAAGGCGTTCCCTTCTTACCAAGCACTCGGCGGCCACAAAGCAAGCCACCGCAAAT CCTCATCGGAAAATCAAACTCCCGCCGCCGCCGCCGTCAACGACAACGCTTCCGTGTCGACATCCACCGGTAACGGCGGA AAGATGCACGAGTGTTCAATCTGTCACAAGAGCTTCCCAACCGGCCAAGCACTCGGCGGTCACAAGCGGTGCCACTACGA AGGCGGCAAGAGCAGCAACAGTACCAACAGCAACGTCCACGCAAATACCAGCAGCGCCGTCACGACTACCTCCGACGGCG GCGCCGCCTCGGCACACAGCCTCCGTGGATTTGATCTGAACCTCCCCGCGCCGCTGACGGAATTCTGGACGCCACTGGGG ATCGGCGGCGGAGATTCCAGGACGAACAAGATCCGAAGCGGTGAGCAGGAGGTGGAGAGCCCTCTGCCGGTAACCGCCAA GAGGCCGCGGTTGTTTTTCGATGGTGGTGAAACGGCGTAG
Protein sequence (LotjaGi5g1v0323100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALETLNSPTAATTPFRSSYQQEEEEEEELHHHEPWTKKKRSKRPRFDNPTTTEEEYLALCLIMLAQSGNNNNKNNNTDN NTNTLRAESSSNSQSQSPPQQQPPLKLTHKCSVCDKAFPSYQALGGHKASHRKSSSENQTPAAAAVNDNASVSTSTGNGG KMHECSICHKSFPTGQALGGHKRCHYEGGKSSNSTNSNVHANTSSAVTTTSDGGAASAHSLRGFDLNLPAPLTEFWTPLG IGGGDSRTNKIRSGEQEVESPLPVTAKRPRLFFDGGETA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 273 | 273 | 2.9E-70 | – | |
| MobiDBLite | 1 | 51 | 51 | - | – | |
| MobiDBLite | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 273 | 273 | 2.9E-70 | – | |
| MobiDBLite | 20 | 35 | 16 | - | – | |
| MobiDBLite | 70 | 106 | 37 | - | – | |
| Gene3D | 107 | 185 | 79 | 5.7E-10 | – | |
| ProSiteProfiles | 109 | 136 | 28 | 9.432 | ||
| SMART | 109 | 131 | 23 | 0.016 | ||
| Pfam | 109 | 133 | 25 | 1.3E-13 | – | |
| SUPERFAMILY | 109 | 185 | 77 | 5.18E-10 | ||
| ProSitePatterns | 111 | 131 | 21 | - | ||
| MobiDBLite | 125 | 160 | 36 | - | – | |
| MobiDBLite | 135 | 160 | 26 | - | – | |
| SMART | 163 | 185 | 23 | 0.19 | ||
| Pfam | 163 | 186 | 24 | 1.3E-12 | – | |
| ProSiteProfiles | 163 | 185 | 23 | 9.411 | ||
| ProSitePatterns | 165 | 185 | 21 | - | ||
| MobiDBLite | 188 | 216 | 29 | - | – | |
| MobiDBLite | 189 | 216 | 28 | - | – | |
| MobiDBLite | 239 | 279 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0323100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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