Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0323300 |
Transcript ID | LotjaGi5g1v0323300.5 |
Related isoforms 7 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64179026..64182875) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTTATGAAACTTGGTTCCAAGCCAGATACCTTTCAGACTGATGGGAACAATGCGAGGTGAAAATATACACTTCT TCAACATACACATTGTTGTTTATTACTAGTTTGCATATGTTTTTAACTGTGATGCAAATTACATTTCTCGATGTGTTGAC GTTCCTTTCTTTTTCCCCCAAATATAAATTAGTTTAGATAAGCATGATATTCATTCTCCTAACAACTTCTTTCATAACAC ACACATAGTGGTAATTGAAAGAATTTTGATAATTCCTATGAGTCTTTACTTCCACTGTGTGTAATGCCATCTTCTATGTG TCTTTTGGTGATTAACGAAACATTTTCTGTTTCATCCCTTTTTTGGTTGGGGACAACAGCATGAATCTTCTTATTTCTGA GTGTTTTCCACCCTCTGTGGTAGCTACTGATGTTTGATATAAACTAAAGAGATACGCAATCAAGATAAATGCTGGGAACG GAAATGTTGCTTGTTAGATATATAAATTCTAGTTACCATTGTTGTTGCTGACCTGCACTTCATAGCTATTATAGACTAAG GCGTTCTTTGGGTTTTGCTACCCTAGCTAGGACTCTTATGATAATAATGAAAATTAGCTATGTTCAAATTGTTTCCTTTC ATTTATTCATTGATTTTGCTTCTAATGTGTAGCTACTATTTAATAAGTGATTTGTCATTATACACTAGTATTTATCTATC ACTCAAAACTCCTAACATTACTATTCTTTTATATGACTGATGTGAAAAAACTTTAGGATCTACTTGATTTTTTTTTCTTT GAAGCTGTATGGCATTATCATAAGCAGAATATTTTAGTTTTATAACATATTGGATAATATGGCTACCTATCCTTATTCCC AATTAAGGTTTTGATTCGTTTTTACATTGTTTCAAATGCCTATTATAAGAGAATGTTGATTCCTATGAACCAAAATTTAG ACATTAAACTTTGACAGAACACAGGTGCACAATCAGTATCTTACACACTTACATATAATTTTTACTTTTGACTATGGCAC AAATTTTGATTGCTACATAACTTCATCAAGTAAGCAGAAATTTGTCTGACTCGGTTAATTTTCTGATTCTTCTCCCTTGG TCCACCATTGATCAACAAGCTTTCATGCTGAATCCATACAGGCCTTTTGTGTAGAAGTAATTTTGAAAGTAAACATGGTG TTGATGAAACAAGCATTCAGAGTTGAATATCCGTTTTAATAAACAAAGGGTTTAGTGTTATATCTTTGTTTCATGTGAAA CTATATACAGTAAGATTTCAATCATGTAGAGCCTGGAATTTGAACTTAGGTTAAAGTTAGATGTTCAAACAATTTTTTCA TGACCTGCCCACCATACTCACATGCTTCGCTTTTTTAATACTATATGTTTCCATTTTATGTATCCTGTTTTCAAACAGTT GCTAATGAGATGGATTTCAAGTGCAGGTATGTGGCAAGTGAGTTATCATCAGATATAATTGTCAGTATAGGGGATATAAA GTTCTACTTACACAAGGTATTCCTCAATCCAGTAAATATATCTAGTCTTCAACTAAGAAATTCTACATAAGCTTTTATTG ATTTCTAGAAGTCTAAATTATTCATGGCAATTTTTTGAAAGTCACTGTAAAATTATCACTTCGATATTCTTTTCCCAATA CATTAATCTATCAAGGGTGATTCATATTTGAACTCTAAATCAATTTGGGTACAACAGTACAAGTTTCCATTTTGTTACTG ATATTCCAAATCTTTCTGTTTGCAGTTTCCTCTTATATCAAAGAGTTCTCACTTGCAGAAGTTGATCTCTCTCAGTAATG AAGAAAACATGGATGAAGTTCACATTCCTGACATTCCTGGTGGCGCAAGTGCCTTTGAGACATGTGCTAAGTTTTGCTAT GGCATGACAGTTACACTCAATGCATACAATGTAATTGCAACTCGATGTGCTGCAGAGTATCTTGGAATGCATGAGACCAT TGAGAAAGGGAACCTTATTTACAAGATTGATGTTTTCCTTAGCTCTAGCATTTTCCGTAGTTGGAAGGATTCGATCATCC TTCTTCAGGCTTCAAAGTCCATGCTACCCCTGGCTGAGGATCTAAAGGTGGTGAGCCATTGCATTGAGTCTATAGCAAAT AAGGCATGTGTTGATGTATCCAAAGTTGACTGGTCCTACTCCTATAACCGGAAAAAGCTTCCAGAGGAAAACGGGGCTGA GACAAACCAGAATGAAGTCAGAACTCGAAAAGTGCCGAGAGATTGGTGGGTTGAAGATTTATGTGAGCTTGAAGTTGATT TGTACAAGTCTGTAATTACAAATATTAAAACCAAGGAAGTTCAATCCAATGATGTAGTTGGCGAAGCTTTGAAAGCTTAT GCTTACAGAAGATTGCCGAATTTCAGCAAGGGTATGATCCGGTGTGGGGATGCGTCAAAGCATCGCTTGATAGTTGAAAC TATTGTGTGGTTGTTGCCTGCTGAGAAAGGCAGTGTTTCTTGTAGGTTCTTGCTCAAGTTATTGAAAGCTGCCATTTTTG TAGAATCAGGAGATAGGACTAAAGAAGAGCTTGTAAAGAGAATAGGGCAGCAACTAGAGGAGGCTTCTGTGAGTGATATT TTGATTCAAGGATCAGATGGAGAGGCTACTATCTATGATGTTAGTATAGTATATAAAATTGTAAGGGAGTTTGTTATGAA GGATCACAATGCTGAGATTGAATCAGTTGTAGATGGTGAACCTGAGGGGATAAGAAAGCCAGGGATTTTATCAGATGCTT CCAAGCTGATGGTTGCGAAACTCATAGATGCATACCTTGCCGAAATTGCAAAGGATCACAATTTACATTTGTCAGATTTT GTTAATCTTGCTGAGTTGGTGTCCAGCACCTCTCGTCCTAACCACGATGGCCTTTACAGGGCTATTGACACATATCTGAA GGTAACTCTTCTTGAAACGAAAAATCCTTGACTCAGATTTGCACACTTCATTTTAAATTCAGTATAGTATGTTTTATAGT TTATTAAAATTCTATGCTCAATATCCAGTAATACTTTTATCATGTTTGAATCAGTTTATTTTTCCTCGGAATCAATTCTG GCACCTTGAAGCTAGTCATAAAATCTTTGCCCCAGAATTGATTCTGGCTTTAAAATCAATTGTGGAAAGATTTCCAAACA TGCTTTAGCTTCACCCCTTGTTTTTGCCATGGCTCTTCTGTGGAGGCAACTAATTCATCCCTTTTGTTTTACTTTGCTTT AAAACACTACAGGAGCACCCTGGGATCAGCAAAGGTGAAAAGAAGAGGATATGCAATCTGATGGACTGCAAAAAGCTATC GGTTGACGCGTGCTTGCACGCTGTGCAAAATGAGAGGCTACCATTACGGGTAGTCGTGCAGGTACTATATTTTGAGCAGT TGAGGACTGCTGCATCCTCAGGTACTAGCACTCCTGACATACCTAAAGGAATGAAAGATTTGAGCAATGGATCCAATGGT AGCTCAAGGTCAGGGACAACTAACCCAGATGATGACTTGGATGCTGCATCCAAAGCGGAGGAGCTGAAGGCATTAAGAAA GGAACTTGCATCGTTGAGACTGAGTAATGGAGTTAAAGATGGAGATAGCAGCAAACCCAGCATGGACAAGGCTGTGATTG GCAAGATGAAAGGGTTGCTCAAGTCAAAGAAGTCATTCATAAAGCTCTGGGCTAGCAAAGGGGGACAAGGGGAGAACAGT GGCTCAGACTCATCAGAGAGTATTGGTTCTGCTAACCCAGAAGAAGCCAAATCTACCCCTTCCAGAAATAGGAGGCACTC AGTTTCATGA
CDS sequence (LotjaGi5g1v0323300.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTTATGAAACTTGGTTCCAAGCCAGATACCTTTCAGACTGATGGGAACAATGCGAGGTATGTGGCAAGTGAGTT ATCATCAGATATAATTGTCAGTATAGGGGATATAAAGTTCTACTTACACAAGTTTCCTCTTATATCAAAGAGTTCTCACT TGCAGAAGTTGATCTCTCTCAGTAATGAAGAAAACATGGATGAAGTTCACATTCCTGACATTCCTGGTGGCGCAAGTGCC TTTGAGACATGTGCTAAGTTTTGCTATGGCATGACAGTTACACTCAATGCATACAATGTAATTGCAACTCGATGTGCTGC AGAGTATCTTGGAATGCATGAGACCATTGAGAAAGGGAACCTTATTTACAAGATTGATGTTTTCCTTAGCTCTAGCATTT TCCGTAGTTGGAAGGATTCGATCATCCTTCTTCAGGCTTCAAAGTCCATGCTACCCCTGGCTGAGGATCTAAAGGTGGTG AGCCATTGCATTGAGTCTATAGCAAATAAGGCATGTGTTGATGTATCCAAAGTTGACTGGTCCTACTCCTATAACCGGAA AAAGCTTCCAGAGGAAAACGGGGCTGAGACAAACCAGAATGAAGTCAGAACTCGAAAAGTGCCGAGAGATTGGTGGGTTG AAGATTTATGTGAGCTTGAAGTTGATTTGTACAAGTCTGTAATTACAAATATTAAAACCAAGGAAGTTCAATCCAATGAT GTAGTTGGCGAAGCTTTGAAAGCTTATGCTTACAGAAGATTGCCGAATTTCAGCAAGGGTATGATCCGGTGTGGGGATGC GTCAAAGCATCGCTTGATAGTTGAAACTATTGTGTGGTTGTTGCCTGCTGAGAAAGGCAGTGTTTCTTGTAGGTTCTTGC TCAAGTTATTGAAAGCTGCCATTTTTGTAGAATCAGGAGATAGGACTAAAGAAGAGCTTGTAAAGAGAATAGGGCAGCAA CTAGAGGAGGCTTCTGTGAGTGATATTTTGATTCAAGGATCAGATGGAGAGGCTACTATCTATGATGTTAGTATAGTATA TAAAATTGTAAGGGAGTTTGTTATGAAGGATCACAATGCTGAGATTGAATCAGTTGTAGATGGTGAACCTGAGGGGATAA GAAAGCCAGGGATTTTATCAGATGCTTCCAAGCTGATGGTTGCGAAACTCATAGATGCATACCTTGCCGAAATTGCAAAG GATCACAATTTACATTTGTCAGATTTTGTTAATCTTGCTGAGTTGGTGTCCAGCACCTCTCGTCCTAACCACGATGGCCT TTACAGGGCTATTGACACATATCTGAAGGAGCACCCTGGGATCAGCAAAGGTGAAAAGAAGAGGATATGCAATCTGATGG ACTGCAAAAAGCTATCGGTTGACGCGTGCTTGCACGCTGTGCAAAATGAGAGGCTACCATTACGGGTAGTCGTGCAGGTA CTATATTTTGAGCAGTTGAGGACTGCTGCATCCTCAGGTACTAGCACTCCTGACATACCTAAAGGAATGAAAGATTTGAG CAATGGATCCAATGGTAGCTCAAGGTCAGGGACAACTAACCCAGATGATGACTTGGATGCTGCATCCAAAGCGGAGGAGC TGAAGGCATTAAGAAAGGAACTTGCATCGTTGAGACTGAGTAATGGAGTTAAAGATGGAGATAGCAGCAAACCCAGCATG GACAAGGCTGTGATTGGCAAGATGAAAGGGTTGCTCAAGTCAAAGAAGTCATTCATAAAGCTCTGGGCTAGCAAAGGGGG ACAAGGGGAGAACAGTGGCTCAGACTCATCAGAGAGTATTGGTTCTGCTAACCCAGAAGAAGCCAAATCTACCCCTTCCA GAAATAGGAGGCACTCAGTTTCATGA
Protein sequence (LotjaGi5g1v0323300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFMKLGSKPDTFQTDGNNARYVASELSSDIIVSIGDIKFYLHKFPLISKSSHLQKLISLSNEENMDEVHIPDIPGGASA FETCAKFCYGMTVTLNAYNVIATRCAAEYLGMHETIEKGNLIYKIDVFLSSSIFRSWKDSIILLQASKSMLPLAEDLKVV SHCIESIANKACVDVSKVDWSYSYNRKKLPEENGAETNQNEVRTRKVPRDWWVEDLCELEVDLYKSVITNIKTKEVQSND VVGEALKAYAYRRLPNFSKGMIRCGDASKHRLIVETIVWLLPAEKGSVSCRFLLKLLKAAIFVESGDRTKEELVKRIGQQ LEEASVSDILIQGSDGEATIYDVSIVYKIVREFVMKDHNAEIESVVDGEPEGIRKPGILSDASKLMVAKLIDAYLAEIAK DHNLHLSDFVNLAELVSSTSRPNHDGLYRAIDTYLKEHPGISKGEKKRICNLMDCKKLSVDACLHAVQNERLPLRVVVQV LYFEQLRTAASSGTSTPDIPKGMKDLSNGSNGSSRSGTTNPDDDLDAASKAEELKALRKELASLRLSNGVKDGDSSKPSM DKAVIGKMKGLLKSKKSFIKLWASKGGQGENSGSDSSESIGSANPEEAKSTPSRNRRHSVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 614 | 614 | 0.0 | ||
PANTHER | 1 | 614 | 614 | 0.0 | ||
CDD | 20 | 124 | 105 | 4.10891E-43 | – | |
SUPERFAMILY | 21 | 117 | 97 | 4.47E-17 | ||
Gene3D | 22 | 120 | 99 | 2.1E-10 | – | |
Pfam | 26 | 118 | 93 | 2.5E-6 | ||
ProSiteProfiles | 29 | 97 | 69 | 10.675 | ||
ProSiteProfiles | 210 | 487 | 278 | 86.188 | ||
Pfam | 210 | 463 | 254 | 8.5E-90 | ||
MobiDBLite | 491 | 525 | 35 | - | – | |
MobiDBLite | 506 | 523 | 18 | - | – | |
Coils | 527 | 547 | 21 | - | – | |
MobiDBLite | 584 | 621 | 38 | - | – | |
MobiDBLite | 587 | 609 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | Positive gravitropism | The orientation of plant parts towards gravity. |
Expression pattern of LotjaGi5g1v0323300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…