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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0323300 |
| Transcript ID | LotjaGi5g1v0323300.8 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT2G14820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|O80970|NPY2_ARATH BTB/POZ domain-containing protein NPY2; TrEMBL-Plants: tr|V7BB31|V7BB31_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0323300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64180220..64182875) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGTTGATGAAACAAGCATTCAGAGTTGAATATCCGTTTTAATAAACAAAGGGTTTAGTGTTATATCTTTGTTTCAT GTGAAACTATATACAGTAAGATTTCAATCATGTAGAGCCTGGAATTTGAACTTAGGTTAAAGTTAGATGTTCAAACAATT TTTTCATGACCTGCCCACCATACTCACATGCTTCGCTTTTTTAATACTATATGTTTCCATTTTATGTATCCTGTTTTCAA ACAGTTGCTAATGAGATGGATTTCAAGTGCAGGTATGTGGCAAGTGAGTTATCATCAGATATAATTGTCAGTATAGGGGA TATAAAGTTCTACTTACACAAGGTATTCCTCAATCCAGTAAATATATCTAGTCTTCAACTAAGAAATTCTACATAAGCTT TTATTGATTTCTAGAAGTCTAAATTATTCATGGCAATTTTTTGAAAGTCACTGTAAAATTATCACTTCGATATTCTTTTC CCAATACATTAATCTATCAAGGGTGATTCATATTTGAACTCTAAATCAATTTGGGTACAACAGTACAAGTTTCCATTTTG TTACTGATATTCCAAATCTTTCTGTTTGCAGTTTCCTCTTATATCAAAGAGTTCTCACTTGCAGAAGTTGATCTCTCTCA GTAATGAAGAAAACATGGATGAAGTTCACATTCCTGACATTCCTGGTGGCGCAAGTGCCTTTGAGACATGTGCTAAGTTT TGCTATGGCATGACAGTTACACTCAATGCATACAATGTAATTGCAACTCGATGTGCTGCAGAGTATCTTGGAATGCATGA GACCATTGAGAAAGGGAACCTTATTTACAAGATTGATGTTTTCCTTAGCTCTAGCATTTTCCGTAGTTGGAAGGATTCGA TCATCCTTCTTCAGGCTTCAAAGTCCATGCTACCCCTGGCTGAGGATCTAAAGGTGGTGAGCCATTGCATTGAGTCTATA GCAAATAAGGCATGTGTTGATGTATCCAAAGTTGACTGGTCCTACTCCTATAACCGGAAAAAGCTTCCAGAGGAAAACGG GGCTGAGACAAACCAGAATGAAGTCAGAACTCGAAAAGTGCCGAGAGATTGGTGGGTTGAAGATTTATGTGAGCTTGAAG TTGATTTGTACAAGTCTGTAATTACAAATATTAAAACCAAGGAAGTTCAATCCAATGATGTAGTTGGCGAAGCTTTGAAA GCTTATGCTTACAGAAGATTGCCGAATTTCAGCAAGGGTATGATCCGGTGTGGGGATGCGTCAAAGCATCGCTTGATAGT TGAAACTATTGTGTGGTTGTTGCCTGCTGAGAAAGGCAGTGTTTCTTGTAGGTTCTTGCTCAAGTTATTGAAAGCTGCCA TTTTTGTAGAATCAGGAGATAGGACTAAAGAAGAGCTTGTAAAGAGAATAGGGCAGCAACTAGAGGAGGCTTCTGTGAGT GATATTTTGATTCAAGGATCAGATGGAGAGGCTACTATCTATGATGTTAGTATAGTATATAAAATTGTAAGGGAGTTTGT TATGAAGGATCACAATGCTGAGATTGAATCAGTTGTAGATGGTGAACCTGAGGGGATAAGAAAGCCAGGGATTTTATCAG ATGCTTCCAAGCTGATGGTTGCGAAACTCATAGATGCATACCTTGCCGAAATTGCAAAGGATCACAATTTACATTTGTCA GATTTTGTTAATCTTGCTGAGTTGGTGTCCAGCACCTCTCGTCCTAACCACGATGGCCTTTACAGGGCTATTGACACATA TCTGAAGGTAACTCTTCTTGAAACGAAAAATCCTTGACTCAGATTTGCACACTTCATTTTAAATTCAGTATAGTATGTTT TATAGTTTATTAAAATTCTATGCTCAATATCCAGTAATACTTTTATCATGTTTGAATCAGTTTATTTTTCCTCGGAATCA ATTCTGGCACCTTGAAGCTAGTCATAAAATCTTTGCCCCAGAATTGATTCTGGCTTTAAAATCAATTGTGGAAAGATTTC CAAACATGCTTTAGCTTCACCCCTTGTTTTTGCCATGGCTCTTCTGTGGAGGCAACTAATTCATCCCTTTTGTTTTACTT TGCTTTAAAACACTACAGGAGCACCCTGGGATCAGCAAAGGTGAAAAGAAGAGGATATGCAATCTGATGGACTGCAAAAA GCTATCGGTTGACGCGTGCTTGCACGCTGTGCAAAATGAGAGGCTACCATTACGGGTAGTCGTGCAGGTACTATATTTTG AGCAGTTGAGGACTGCTGCATCCTCAGGTACTAGCACTCCTGACATACCTAAAGGAATGAAAGATTTGAGCAATGGATCC AATGGTAGCTCAAGGTCAGGGACAACTAACCCAGATGATGACTTGGATGCTGCATCCAAAGCGGAGGAGCTGAAGGCATT AAGAAAGGAACTTGCATCGTTGAGACTGAGTAATGGAGTTAAAGATGGAGATAGCAGCAAACCCAGCATGGACAAGGCTG TGATTGGCAAGATGAAAGGGTTGCTCAAGTCAAAGAAGTCATTCATAAAGCTCTGGGCTAGCAAAGGGGGACAAGGGGAG AACAGTGGCTCAGACTCATCAGAGAGTATTGGTTCTGCTAACCCAGAAGAAGCCAAATCTACCCCTTCCAGAAATAGGAG GCACTCAGTTTCATGA
CDS sequence (LotjaGi5g1v0323300.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCAAGTGCAGGTATGTGGCAAGTGAGTTATCATCAGATATAATTGTCAGTATAGGGGATATAAAGTTCTACTT ACACAAGTTTCCTCTTATATCAAAGAGTTCTCACTTGCAGAAGTTGATCTCTCTCAGTAATGAAGAAAACATGGATGAAG TTCACATTCCTGACATTCCTGGTGGCGCAAGTGCCTTTGAGACATGTGCTAAGTTTTGCTATGGCATGACAGTTACACTC AATGCATACAATGTAATTGCAACTCGATGTGCTGCAGAGTATCTTGGAATGCATGAGACCATTGAGAAAGGGAACCTTAT TTACAAGATTGATGTTTTCCTTAGCTCTAGCATTTTCCGTAGTTGGAAGGATTCGATCATCCTTCTTCAGGCTTCAAAGT CCATGCTACCCCTGGCTGAGGATCTAAAGGTGGTGAGCCATTGCATTGAGTCTATAGCAAATAAGGCATGTGTTGATGTA TCCAAAGTTGACTGGTCCTACTCCTATAACCGGAAAAAGCTTCCAGAGGAAAACGGGGCTGAGACAAACCAGAATGAAGT CAGAACTCGAAAAGTGCCGAGAGATTGGTGGGTTGAAGATTTATGTGAGCTTGAAGTTGATTTGTACAAGTCTGTAATTA CAAATATTAAAACCAAGGAAGTTCAATCCAATGATGTAGTTGGCGAAGCTTTGAAAGCTTATGCTTACAGAAGATTGCCG AATTTCAGCAAGGGTATGATCCGGTGTGGGGATGCGTCAAAGCATCGCTTGATAGTTGAAACTATTGTGTGGTTGTTGCC TGCTGAGAAAGGCAGTGTTTCTTGTAGGTTCTTGCTCAAGTTATTGAAAGCTGCCATTTTTGTAGAATCAGGAGATAGGA CTAAAGAAGAGCTTGTAAAGAGAATAGGGCAGCAACTAGAGGAGGCTTCTGTGAGTGATATTTTGATTCAAGGATCAGAT GGAGAGGCTACTATCTATGATGTTAGTATAGTATATAAAATTGTAAGGGAGTTTGTTATGAAGGATCACAATGCTGAGAT TGAATCAGTTGTAGATGGTGAACCTGAGGGGATAAGAAAGCCAGGGATTTTATCAGATGCTTCCAAGCTGATGGTTGCGA AACTCATAGATGCATACCTTGCCGAAATTGCAAAGGATCACAATTTACATTTGTCAGATTTTGTTAATCTTGCTGAGTTG GTGTCCAGCACCTCTCGTCCTAACCACGATGGCCTTTACAGGGCTATTGACACATATCTGAAGGAGCACCCTGGGATCAG CAAAGGTGAAAAGAAGAGGATATGCAATCTGATGGACTGCAAAAAGCTATCGGTTGACGCGTGCTTGCACGCTGTGCAAA ATGAGAGGCTACCATTACGGGTAGTCGTGCAGGTACTATATTTTGAGCAGTTGAGGACTGCTGCATCCTCAGGTACTAGC ACTCCTGACATACCTAAAGGAATGAAAGATTTGAGCAATGGATCCAATGGTAGCTCAAGGTCAGGGACAACTAACCCAGA TGATGACTTGGATGCTGCATCCAAAGCGGAGGAGCTGAAGGCATTAAGAAAGGAACTTGCATCGTTGAGACTGAGTAATG GAGTTAAAGATGGAGATAGCAGCAAACCCAGCATGGACAAGGCTGTGATTGGCAAGATGAAAGGGTTGCTCAAGTCAAAG AAGTCATTCATAAAGCTCTGGGCTAGCAAAGGGGGACAAGGGGAGAACAGTGGCTCAGACTCATCAGAGAGTATTGGTTC TGCTAACCCAGAAGAAGCCAAATCTACCCCTTCCAGAAATAGGAGGCACTCAGTTTCATGA
Protein sequence (LotjaGi5g1v0323300.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFKCRYVASELSSDIIVSIGDIKFYLHKFPLISKSSHLQKLISLSNEENMDEVHIPDIPGGASAFETCAKFCYGMTVTL NAYNVIATRCAAEYLGMHETIEKGNLIYKIDVFLSSSIFRSWKDSIILLQASKSMLPLAEDLKVVSHCIESIANKACVDV SKVDWSYSYNRKKLPEENGAETNQNEVRTRKVPRDWWVEDLCELEVDLYKSVITNIKTKEVQSNDVVGEALKAYAYRRLP NFSKGMIRCGDASKHRLIVETIVWLLPAEKGSVSCRFLLKLLKAAIFVESGDRTKEELVKRIGQQLEEASVSDILIQGSD GEATIYDVSIVYKIVREFVMKDHNAEIESVVDGEPEGIRKPGILSDASKLMVAKLIDAYLAEIAKDHNLHLSDFVNLAEL VSSTSRPNHDGLYRAIDTYLKEHPGISKGEKKRICNLMDCKKLSVDACLHAVQNERLPLRVVVQVLYFEQLRTAASSGTS TPDIPKGMKDLSNGSNGSSRSGTTNPDDDLDAASKAEELKALRKELASLRLSNGVKDGDSSKPSMDKAVIGKMKGLLKSK KSFIKLWASKGGQGENSGSDSSESIGSANPEEAKSTPSRNRRHSVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 599 | 595 | 0.0 | ||
| PANTHER | 5 | 599 | 595 | 0.0 | ||
| CDD | 6 | 109 | 104 | 5.25135E-43 | – | |
| SUPERFAMILY | 7 | 102 | 96 | 6.51E-17 | ||
| Gene3D | 7 | 105 | 99 | 2.0E-10 | – | |
| Pfam | 11 | 103 | 93 | 2.4E-6 | ||
| ProSiteProfiles | 14 | 82 | 69 | 10.675 | ||
| ProSiteProfiles | 195 | 472 | 278 | 86.188 | ||
| Pfam | 195 | 448 | 254 | 8.0E-90 | ||
| MobiDBLite | 476 | 510 | 35 | - | – | |
| MobiDBLite | 491 | 508 | 18 | - | – | |
| Coils | 512 | 532 | 21 | - | – | |
| MobiDBLite | 569 | 606 | 38 | - | – | |
| MobiDBLite | 572 | 594 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Positive gravitropism | The orientation of plant parts towards gravity. |
Expression pattern of LotjaGi5g1v0323300.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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