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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0326400 |
| Transcript ID | LotjaGi5g1v0326400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylthioribose kinase; TAIR: AT1G49820.1 S-methyl-5-thioribose kinase; Swiss-Prot: sp|Q7XR61|MTK1_ORYSJ Methylthioribose kinase 1; TrEMBL-Plants: tr|A0A151U7P3|A0A151U7P3_CAJCA Methylthioribose kinase; Found in the gene: LotjaGi5g1v0326400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64379512..64382219) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTCTCCTCAACTCCTCTGGTTCTCTTGTCATCAAACAGGTAATTCATAAATCATGGGCACTTGCAAATTTCGTTTG TTTTTCTGGGGTGTTGAAATTCGTGCTGTTTTTGTAGGCTCTGCCTTATGTTCGTTGCATAGGGGAATCATGGCCGATGA CGAAGGAGAGAGCATATTTTGAGTCTATGGCTTTGAAAGAAGAGTCTCGGTTGTGCCCTGAGCATGTCCCTCAAGTGTAT CACTTTGACCGTACCATGTCTTTGATTGCTATGCGTTACATTGAGCCTCCACATATAATTCTTAGGAAAGGGTTGATTGC TGGGATTGAGTATCCTTTGCTGGCTGAGCATATGGCTGATTTCATGGCTAAGACACTCTTCTTTACTTCTCTCCTTTTCC GCACCACTGCTGATCACAAACGGGACGGTATGACCTTTGCCATGTTACTTTGTATTGGAAACATTGATATCCTGATGTTT TTGTTATTAAGAAAAGAGAACCATTTCTCTGGGTAGAAGATGATTCATGTATACCTTATTACATAAGCTAGCTAGGCTAA GTGCATACTAACTAACAAACTAACGAACTCTTCCTTTTCGACAGAAGATTAATGAAAGAATCACTTATAAGATTCCACAC TTTTCTGTTGACACCAATGCACTCATTGCAAGTTAACAGTGAACATAACTCCTCTTATTGATTGTGATGGAACAAACATA GTGACTAATGGATGCTCCTGTAGTTGTATGGGCATTGCTTCTTTTGCCTTAATAATTGTTTAAGGGAGATATAGCTAAAT AAGTCCATATATATGGTAGAACAATTCTCACTGCTGAGCTAGTTTTTTGGGTAGAATTAGGCCTAACCCAAATTCTAAAT GTGATCATAGCCTATGGATCTGTTTATTGGGTCACCCAAATATGTCCAATCCTGCAAACTTCACTGGAATTCTAAGAAAA ATTAAGCTTTATGGATGAAAATGGATGAAAGAAATGATATTATCTTCCTGTTAGTATAAGAAAGGTTATCACGTATTATC TTTTTATGTCAGCTCGAGGCATGTTTAGCATAAACCTGATCTCATGCTAGTTTCATGCAGTTGGCGAATATTGTGGGAAT GTGGAGTTATGCAGGCTCACTGAACAGGTTGTTTTCTCTGATCCTTACAAAGTTTCTGAATATAATCGTTGGACTTCCCC TCATCTCGATAGTGATGCGGAGGCTGTTCGGGAAGACAATTTGCTGAAGCTTGAAGTTGCTGAGCTCAAATCTAAGTATT ATGACTCTCTTTTTTCTCCATTTTATGCAGTAGTTATGTTGTCAGCATTTTGTTTATAAGAATTTATATCTGTGCAGGTT CTGTGAGAGGGCTCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTAACTCCTGAATCAACACAAGTTA TTGATCCAGAATTTGCATTCTATGGACCAATAGGGTTTGACATTGGAGCATTTTTGGGAAATTTGATTTTGGCTTTCTTC TCTCAAGATGGACATGCTGATCAAGCAAATGATCGAAAAGTAGGTCCCCTTTTCTCACATGTCCTTTGCACAGTCCTTTC CTGGGCTCTTCTTTTTAATATGTACTGTATTTCTGGTTATTCTTCATAATCTAACTTAAAAACATGAATTCTCTGTCTCT TTTTTTTTAATGTCTTAATTTGTATTTAACTTTGGTAGTTTAGTTTCATGGCAGAGATGTCAAGGTATTTGTACCAGCAA TAAAGTTTATGAATTTTGCTTCCTTTGCGTTTATTTATAGTTTTGAAATTCCCTTGTGTTGTCTGCTTGTTTTGTCTATG TTGTGTCAAGAACCGGTGCCTAGTTATCTTAATTCATAGAAGTATCCTTTTGTTTGCATCTCGATGAGGTATCAGAATTA CAATTTATACCATTTGAATTTGAAAAGTTACAAACATAGTTTCCGAGAATGTGAGCTCTCTTAGCCCAACACTCGTAACA AGTGAAGACTTGGTAACGGACAGATTCATTTGCATGGTTTGTATTTCGTGTTCAGTGCAAGGTTTGTTAAGAGAAACTGC ATTTTAGATTATATAGAGATTGGACAGCTCATACTGACTAGTTTTTAGAAGTTCCCTTCTCTGTTTCTGTTTTTCCTTCT ATTTGATCTTTGTTGAGGGTCTCTTATGATTCTATGTTTCGTACTTCTATTTCTTTCTTTGTTTTAAAATTTCGTATTTT ATTTAAAAAATTGGAGACCTGATCGGAACTTAGGCTGCTGTTAGCTGAACTAGTACTGTATTGTTTATCTATTGCTTTAT CTTCTCCTAATTTGACAAGATCTTTTCCTTTCAGTTGAGTTACTGTGCATTGCAATGAAAGATAAATGAAATAATGAGAA TTGGCCTTTAAAAATGTAATTTTTAATAATTCCTGAAGAACATTGACTATTGGGGGAAAAGTGTTATTCTTTGTCTAAAA CACTACTTTATGCAGGCATATAAAGAGTGGATTCTTAAGACAATTGAAGACACTTGGGATCTTTTCCACCAGAAATTCAC TGCACTTTGGGATGAGCATAGAGACGGTGCTGGTGAGGCATATCTTCCAGCAATCTATAACAATCCTGAGGTCCAGCTGC TTGTACAGAAGAAATACATGACAGATTTGTTTCATGACAGTCTTGGATTTGGTGCTGCCAAAATGATA
CDS sequence (LotjaGi5g1v0326400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAAGGAGAGAGCATATTTTGAGTCTATGGCTTTGAAAGAAGAGTCTCGGTTGTGCCCTGAGCATGTCCCTCAAGT GTATCACTTTGACCGTACCATGTCTTTGATTGCTATGCGTTACATTGAGCCTCCACATATAATTCTTAGGAAAGGGTTGA TTGCTGGGATTGAGTATCCTTTGCTGGCTGAGCATATGGCTGATTTCATGGCTAAGACACTCTTCTTTACTTCTCTCCTT TTCCGCACCACTGCTGATCACAAACGGGACGTTGGCGAATATTGTGGGAATGTGGAGTTATGCAGGCTCACTGAACAGGT TGTTTTCTCTGATCCTTACAAAGTTTCTGAATATAATCGTTGGACTTCCCCTCATCTCGATAGTGATGCGGAGGCTGTTC GGGAAGACAATTTGCTGAAGCTTGAAGTTGCTGAGTTCTGTGAGAGGGCTCAGGCACTAATACATGGAGATCTACACACT GGTTCTGTGATGGTAACTCCTGAATCAACACAAGTTATTGATCCAGAATTTGCATTCTATGGACCAATAGATGGACATGC TGATCAAGCAAATGATCGAAAAGTAGGTCCCCTTTTCTCACGCATATAA
Protein sequence (LotjaGi5g1v0326400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKERAYFESMALKEESRLCPEHVPQVYHFDRTMSLIAMRYIEPPHIILRKGLIAGIEYPLLAEHMADFMAKTLFFTSLL FRTTADHKRDVGEYCGNVELCRLTEQVVFSDPYKVSEYNRWTSPHLDSDAEAVREDNLLKLEVAEFCERAQALIHGDLHT GSVMVTPESTQVIDPEFAFYGPIDGHADQANDRKVGPLFSRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 1.7E-90 | – | |
| Gene3D | 1 | 45 | 45 | 8.9E-14 | – | |
| SUPERFAMILY | 3 | 183 | 181 | 9.91E-37 | ||
| Pfam | 19 | 183 | 165 | 2.5E-12 | ||
| Gene3D | 46 | 185 | 140 | 4.2E-60 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0326400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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