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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0330000 |
| Transcript ID | LotjaGi5g1v0330000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal transport/detoxification superfamily protein; TAIR: AT1G23000.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|A2RVM8|HIP37_ARATH Heavy metal-associated isoprenylated plant protein 37; TrEMBL-Plants: tr|I3T5B7|I3T5B7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0330000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64701403..64703925) extracted from Lotus japonicus Gifu genome v1.2.
GCATTTCTCCCTCTGACTTTTCCATATATCTCATCTCATTCTTTTTTATTATTTCTTCTTTCTGTTTTTCTTGGCATTTG TTATTTGTTTGTTCTTCCTCTCTTCACTTTTTATATTTCTTTGTTTATGCTTAAACCCCATGTGCCACTGTTTTGTTTTC TTTTGAGAACGAACCAACTGCTTCAGTTGAGAGTAATAAGGAAGGAAGAAGAGTAGCTACGGCTATTAGTATTAGCTACT ACTGAGTACTACAGAGAGAGAAAGTAGAATACTAGTACTAGATTCTATAAGTTATAGAAACTCACAAGCTAATGCCATTG CTATTGCAACCCCTTTTGGTTTTACCACTTGCTGCTTAAGCTTATTTTTTCAAAGGGAGAGAGAAAAGAGGTAGTAGCTT GTTTCATCTCAAACAGCACAGCACTGAAGAAATGACTAAAGAAGAAGACTTTAAGCTCCTTAAAATCCAGGTTTTCCTCC CCATCACATGCTTTCTTTTGAGACAACTAACTCCCTTTTCACATTTTCAATTTCGTTTCCTATCAACACAACAAAGTTTT GTATCTTTCTGTTTTCTTTTTGTGGTAGTTTGCTTTGTTTCTTTTACTCATTATTTTTCTTTCCTCAACAGACTTGTGTT CTCAAAGTGAACATTCACTGTGATGGTTGTAAGCAGAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTTCTCCCTTTCT CTTCTTCTCTCTAATTTGTTTCCTTCATACTGTCTTGTCCTTACTCTTCACTCACTCTTGTCTATATTTATCTTTAGATT GGATAGTTTCTAAGATTGAAGTAACATTATACTACATTTATAGTACAGAATCATATTCAAGCTGTTTGTAGTAAGTTCAG GCTTTTAGTTAAGCATTTCAAGCTTGCAACAGTTTTCTTAACCAATTTCCTAGTTTTACCCTGGTTGTATGAAATGAAGA AATTCATAAATTGCAGTGGGAAAGTACAGTATAGTTTTACCTTCTAGATGGTGTGTACAAGATTTTACAGTTTTTATCTG TTTGATTAACTGCTGTGCTTGGAATTGACATCTTTGGTTAATTTCTTGTTCTGCAGGTGTTTACCAAGTTCAAATAGATG CAGAACAGCAGAAAGTAACAGTTTCAGGTAGTGTGGACTCTGCAACTTTGATCAAGAAATTGAACAGATCTGGTAAACAT GCTGAGCTCTGGTCTCAGAAGGCTAATCAGAACCAAAAGCAGAAGAACAACAACAATATCAACAATGTGAAAGATGACAA GAACAATAAAGGGCAAAAACAAGGACTAGTGAAGGGTCTTGAGGCAGCATTCAAAAACCACCAGCAGCAGCAGCAGAAGT TTCCTGCTTTCAGTTCTGAAGAGGATGATGAATACTATGACTATGATGATGAGGATGATGATGATGAAGAGTTGAGGTTC ATCAGGGAGAAAGCAAATCAGCTTCAATTGCTGAGGCAGCAGCAGCAAGCAGTTGTTGATGCTAACAACAATGTGAAGAA GGCAATTTCTGCAGCTTCCAACAATGGTCATAATAAGATGAACAATGCTGCTGGCAAGAAAGGAGGCCAAAATCAGAACA TGGGAGGAATGAAGGAGAGCAATGTGGGGTTTGATCAGAAAACCATGGCAGCTCTGAAACTGAACAATGCTCATCTGGGT GGTGGTGAAAGCCTCAATCTTGGAGAAGCTAAAAGGGCCAATGACATTGGTGCTATGATGAATTTAGCTGGGTTTAATGG TGGTAATGCTGGCAATGCAACTGTTCTTGGGGGAAATTCCAATGGAATGGGAGGGTTTCCTGTTCAGTCCAACAACATGT TTCAGGGAAATTCCCCTGCTGCTGTTCCAAATGGTGGTTATGCACCATCTATGCTAATGAACATGAATGGGTTCAATAAT CATCAATCACCAATGATGAACATGAACATGATGCAGACTAGGCATGCTATGCAGCAACAACCTCAGATGATGTTTCACAG GTCCCCTGTCATTCCTCCTAACACTGGCTATTACTTCAATCACAATAACTATAACCCTGCTGCAAATTACTCGTATTATG CCTCCTTGCCTAGTTACCCTGGAGGAGATTATGATCATGATCATCACTCGGCAGCTCACATGTTCAGTGATGACAACACT ACCAGCAGCTGTTCAGTGATGTAATGATAGAGATTGTAGAGCTAAAAGGTGTGAAGGAGGGAAAAAAAGCAAAAAGGCAT GGTGATTGTGTTTGACCTTAAAGTAGTCCCATTTACCAAGCTAGTATAGTGCTTGACTGTGATTTGGTGAATGTTTTAGA GATGTGAATGTATTGTTAGTGAATCATATCAGTGTACTGTGTAGTGGTTGAGATGATGTTGGCTTTTATTTTAAAAAAAT GTCTTTGATTGTGTGTCTCATAACTGTCTTGGTGTGCTATATGAATGTGTTAACTGTTATCCCCAATTCAAAAATCACAA CTTCAGGTCACATAAATGTAGATACATAATTAGCTTTGTGCTT
CDS sequence (LotjaGi5g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAAAGAAGAAGACTTTAAGCTCCTTAAAATCCAGACTTGTGTTCTCAAAGTGAACATTCACTGTGATGGTTGTAA GCAGAAAGTGAAGAAACTCCTTCAGAGAATTGAAGGTGTTTACCAAGTTCAAATAGATGCAGAACAGCAGAAAGTAACAG TTTCAGGTAGTGTGGACTCTGCAACTTTGATCAAGAAATTGAACAGATCTGGTAAACATGCTGAGCTCTGGTCTCAGAAG GCTAATCAGAACCAAAAGCAGAAGAACAACAACAATATCAACAATGTGAAAGATGACAAGAACAATAAAGGGCAAAAACA AGGACTAGTGAAGGGTCTTGAGGCAGCATTCAAAAACCACCAGCAGCAGCAGCAGAAGTTTCCTGCTTTCAGTTCTGAAG AGGATGATGAATACTATGACTATGATGATGAGGATGATGATGATGAAGAGTTGAGGTTCATCAGGGAGAAAGCAAATCAG CTTCAATTGCTGAGGCAGCAGCAGCAAGCAGTTGTTGATGCTAACAACAATGTGAAGAAGGCAATTTCTGCAGCTTCCAA CAATGGTCATAATAAGATGAACAATGCTGCTGGCAAGAAAGGAGGCCAAAATCAGAACATGGGAGGAATGAAGGAGAGCA ATGTGGGGTTTGATCAGAAAACCATGGCAGCTCTGAAACTGAACAATGCTCATCTGGGTGGTGGTGAAAGCCTCAATCTT GGAGAAGCTAAAAGGGCCAATGACATTGGTGCTATGATGAATTTAGCTGGGTTTAATGGTGGTAATGCTGGCAATGCAAC TGTTCTTGGGGGAAATTCCAATGGAATGGGAGGGTTTCCTGTTCAGTCCAACAACATGTTTCAGGGAAATTCCCCTGCTG CTGTTCCAAATGGTGGTTATGCACCATCTATGCTAATGAACATGAATGGGTTCAATAATCATCAATCACCAATGATGAAC ATGAACATGATGCAGACTAGGCATGCTATGCAGCAACAACCTCAGATGATGTTTCACAGGTCCCCTGTCATTCCTCCTAA CACTGGCTATTACTTCAATCACAATAACTATAACCCTGCTGCAAATTACTCGTATTATGCCTCCTTGCCTAGTTACCCTG GAGGAGATTATGATCATGATCATCACTCGGCAGCTCACATGTTCAGTGATGACAACACTACCAGCAGCTGTTCAGTGATG TAA
Protein sequence (LotjaGi5g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKEEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYQVQIDAEQQKVTVSGSVDSATLIKKLNRSGKHAELWSQK ANQNQKQKNNNNINNVKDDKNNKGQKQGLVKGLEAAFKNHQQQQQKFPAFSSEEDDEYYDYDDEDDDDEELRFIREKANQ LQLLRQQQQAVVDANNNVKKAISAASNNGHNKMNNAAGKKGGQNQNMGGMKESNVGFDQKTMAALKLNNAHLGGGESLNL GEAKRANDIGAMMNLAGFNGGNAGNATVLGGNSNGMGGFPVQSNNMFQGNSPAAVPNGGYAPSMLMNMNGFNNHQSPMMN MNMMQTRHAMQQQPQMMFHRSPVIPPNTGYYFNHNNYNPAANYSYYASLPSYPGGDYDHDHHSAAHMFSDDNTTSSCSVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 400 | 400 | 4.4E-108 | – | |
| PANTHER | 1 | 400 | 400 | 4.4E-108 | – | |
| Gene3D | 12 | 78 | 67 | 2.7E-20 | – | |
| SUPERFAMILY | 12 | 78 | 67 | 1.31E-15 | ||
| CDD | 16 | 75 | 60 | 4.76712E-13 | ||
| Pfam | 17 | 72 | 56 | 1.6E-14 | ||
| ProSiteProfiles | 20 | 76 | 57 | 11.852 | ||
| MobiDBLite | 81 | 106 | 26 | - | – | |
| MobiDBLite | 81 | 98 | 18 | - | – | |
| MobiDBLite | 120 | 144 | 25 | - | – | |
| Coils | 164 | 184 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0330000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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