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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0331300 |
| Transcript ID | LotjaGi5g1v0331300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G40940.1 putative fasciclin-like arabinogalactan protein 20; Swiss-Prot: sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20; TrEMBL-Plants: tr|K7LLL3|K7LLL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0331300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64829879..64831452) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATACAAGGGGAAGAGCTCATCTTCAGTCTCCTTCACTCTGGTATTTTATTGGGGAAGGGGTGTTTCTGTCTTTCTT GCACGAAACGGCTATAACAAACTTCGTGGTGTGCATCCAATAGAACAACGCCACGTTGAGGTTACATTTTCCCGCCCAAT CTTGAAGGTTCATCAATGGCGTCTTCACGCGCGTTCTTCCTCCTCCACGCTCTCCCTCTCTTCTCGCTCTTCTTCTCTCT GTCAACCGCTCTCCCCCGCGACGCCATTCTCGACGCCGCCGATGTCCTCACCGACACAGGTTTCGTCTCCATGGGCCTCA CGCTCGAAATCGTCGCCGAAACTCTACTGGAGCACTCTCCTTCCGCCACCGTCTTCGCCCCCTCAGACTCCGCCTTCAAG AAATCCGGCCAGCCTTCCCTCGACCTCCTCCGCTACCACTTCGCCCCGCTCCCCCTCCCGCCGCGAAGCCTCCGCATCCT CCCCGCCGGATCTAACATCCCGACGATGCTCGCCGGTCAGTCACTCACAGCCACCACCTCTCCCTCCGACCTCATCGCCT CCTTCAACAACGTCAAGATCACATCGATGCCGATCTACGACGACGGCTTCCTCCTCGTTTACGGAATCGAGAGGTTCTTT GATCCAACGTTTCAGTACACCGGTCCCAATCCGAAACCTAATCCCAATTCCACTTGTGCGTTGAAGAATAGCACTGCAGG TTCCTCCGATTCCTTCGATCAAGCCGTCGAAACCCTAAGTTCCGGCGGATACTCCGCCATGGCTTCGTTTCTCGGAATGC AGCTCTCCGGCGTAGCAGAGCAGAGTGGAATAACCGTTTTTGCTCCGGCGGATGAGACGGTGCTGAGCCGCATCGGAGAT TTCGGAGATTACCCTGCGTTCTACCGGCGCCACGTCGTGCCGTGCAAGCTTCTGTGGAACGACCTGGTGAACATCGGGGA TGGGACAGAGCTGCCGACGTTCTTGGAGGGATTTTCCATCAACATCACCAGATCCAGTGGCATTTTGATTCTCAACGGCG TTCCGGTGTTCTTTCCAGATATGGTCTTCAATGACAAGATGGTTGTTCATGGCCTCGGTGATGTTCTTGCTGCGCTGGAT AACACTCATAGGGTTGTTGACTCTCTCTATGACTCTGACTCTGACGTTGATGGTGAAGAGAATCTGTTTGTCCCTGATGA ATTTTGAGGCACACCCATGGTGTTGATGATGATCAGAATTTGTTTGACTATGGCGAATTTTGAAGCTGAGATTTCTAGTG CTAGTGTCTCTTTCTGTAAATTTTCCAGCTACTGATGATGAATGTGTCTAAACTAGTGAATTCAGAGTGTTTGGTCTAGT AGACTGAGATTTCATTTTTTTTTCATATATGTGACATGAACTATTATTACTTTGATTGTTGAGAATTAGTCACTGAAATA ATGCTGGAAGATGAAACTTTCAATGAATGCTTAGTAGATTTTCTGTTGCTTTGTGTGATAATATATAATCCTAGATTTGA CATTATTAGCACAGGAACATGCTTAGTAGCTACTACCATTTAATGGTGAATGGG
CDS sequence (LotjaGi5g1v0331300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCTTCACGCGCGTTCTTCCTCCTCCACGCTCTCCCTCTCTTCTCGCTCTTCTTCTCTCTGTCAACCGCTCTCCC CCGCGACGCCATTCTCGACGCCGCCGATGTCCTCACCGACACAGGTTTCGTCTCCATGGGCCTCACGCTCGAAATCGTCG CCGAAACTCTACTGGAGCACTCTCCTTCCGCCACCGTCTTCGCCCCCTCAGACTCCGCCTTCAAGAAATCCGGCCAGCCT TCCCTCGACCTCCTCCGCTACCACTTCGCCCCGCTCCCCCTCCCGCCGCGAAGCCTCCGCATCCTCCCCGCCGGATCTAA CATCCCGACGATGCTCGCCGGTCAGTCACTCACAGCCACCACCTCTCCCTCCGACCTCATCGCCTCCTTCAACAACGTCA AGATCACATCGATGCCGATCTACGACGACGGCTTCCTCCTCGTTTACGGAATCGAGAGGTTCTTTGATCCAACGTTTCAG TACACCGGTCCCAATCCGAAACCTAATCCCAATTCCACTTGTGCGTTGAAGAATAGCACTGCAGGTTCCTCCGATTCCTT CGATCAAGCCGTCGAAACCCTAAGTTCCGGCGGATACTCCGCCATGGCTTCGTTTCTCGGAATGCAGCTCTCCGGCGTAG CAGAGCAGAGTGGAATAACCGTTTTTGCTCCGGCGGATGAGACGGTGCTGAGCCGCATCGGAGATTTCGGAGATTACCCT GCGTTCTACCGGCGCCACGTCGTGCCGTGCAAGCTTCTGTGGAACGACCTGGTGAACATCGGGGATGGGACAGAGCTGCC GACGTTCTTGGAGGGATTTTCCATCAACATCACCAGATCCAGTGGCATTTTGATTCTCAACGGCGTTCCGGTGTTCTTTC CAGATATGGTCTTCAATGACAAGATGGTTGTTCATGGCCTCGGTGATGTTCTTGCTGCGCTGGATAACACTCATAGGGTT GTTGACTCTCTCTATGACTCTGACTCTGACGTTGATGGTGAAGAGAATCTGTTTGTCCCTGATGAATTTTGA
Protein sequence (LotjaGi5g1v0331300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSRAFFLLHALPLFSLFFSLSTALPRDAILDAADVLTDTGFVSMGLTLEIVAETLLEHSPSATVFAPSDSAFKKSGQP SLDLLRYHFAPLPLPPRSLRILPAGSNIPTMLAGQSLTATTSPSDLIASFNNVKITSMPIYDDGFLLVYGIERFFDPTFQ YTGPNPKPNPNSTCALKNSTAGSSDSFDQAVETLSSGGYSAMASFLGMQLSGVAEQSGITVFAPADETVLSRIGDFGDYP AFYRRHVVPCKLLWNDLVNIGDGTELPTFLEGFSINITRSSGILILNGVPVFFPDMVFNDKMVVHGLGDVLAALDNTHRV VDSLYDSDSDVDGEENLFVPDEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 330 | 330 | 4.7E-129 | – | |
| PANTHER | 1 | 330 | 330 | 4.7E-129 | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 3 | 159 | 157 | 10.818 | ||
| Phobius | 6 | 20 | 15 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 343 | 318 | - | – | |
| SUPERFAMILY | 56 | 156 | 101 | 6.02E-9 | ||
| SMART | 65 | 158 | 94 | 1.2E-6 | ||
| ProSiteProfiles | 174 | 311 | 138 | 9.717 | ||
| SUPERFAMILY | 188 | 312 | 125 | 5.1E-13 | ||
| Pfam | 211 | 311 | 101 | 2.1E-4 | ||
| SMART | 220 | 314 | 95 | 1.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0331300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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