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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0333600 |
| Transcript ID | LotjaGi5g1v0333600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylserine synthase 2; TAIR: AT1G15110.1 phosphatidyl serine synthase family protein; Swiss-Prot: sp|F4HXY7|PSS1_ARATH CDP-diacylglycerol--serine O-phosphatidyltransferase 1; TrEMBL-Plants: tr|A0A0S3SLY2|A0A0S3SLY2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0333600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65032587..65036338) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTGAGAGTATTATTTGTATAATTTTTTTTGTTTCTGTTTCCATTCAGGGTTCTTATTAGGCCACATCCTGCAATGTG GCGCATGGTTCATGGGATGGCTGTTGTTTACCTGGTTGCCCTCACATTCTTGCTTTTTCAGGTTGGTTATCAGGTCTTGG TTTGACAGTTCTTTTTTTTTTTTTTTTTGTAAATGAAATGAATTAATTAGATGCAATATAATTTCATTACATTTCAAATC TTAAAAATTAAAATACTCCATTCAAAGACGCCAACAAAAATCTATCCTCAGTCTAGCCTTTACATATAGTCCCATGTTCT TGGAGTTCATCATTACCAATGAACCCTACAGCAGTTCAACAAAAACCTTCAAAGCACACAACAAAACAGCAAAGTATATT ATAGGCCCCCAAGTAATTCAATCAGCTTCTTTACCTGAGACTCAATTTGAGCAAAACTTCTACCAGTGCAGTGCCTACAC TCAAGGGCAATGCAGAGTAATTTTAAACATGACCTTTACCATCCACATAAAAGTCAACCTTTGATTTCCATGCACTGGCA ACACCATTGAGATACACCAGCTGTAGATATTCATCCAAAAAGTAGCCTAGCCCATCCACAACTTCAACACTTTATCCTTA CCACCAGAGGCTACCTTCTCCCCATCAGGACTCCAATCAACAGAAAAAACTTCATCAGCATGGCCTGGAAGATCTTGCCT CAACTTACGAGTCCTAATATCCCAAACCTTAAGTGTAGAGTCCTTGCTGCCACTTAGAATAAGTCTACTATCAGCAGACC AGCTGATCTGGTAAACCGGCCCAACATGGCCACGAAAGGCAGCAACAAATTTCCCCGTAGTGCCATTCCATAACTTCACA GATTTATCGAAAGATGCACTTGCCACCCATTGCCCATCAGGTGAAAAATAGACATGGTTTACAAGCTGCTGATGAGTGTA TGTCAGTATAATATCTAATTCATACTTTTAAAATTTCATACATTTTTCTGGTGCATCTTTGCACTTTATTTTGCATGCTT TCTAGATTTGCATCTGTTAACAACATCCTCCGTAATTTGTTGCTCTGTTTCCGGCAAGTGAATGGAAATGGACTAATTTA TATTCTTAATCTTTTCTTTTCCCCACAGAAGCGTGATGATGCTCGGCAGTTTATGAAGTTTCTTCATGGTGATCTTGGAG TTGGTAATTCAATCTGATTCCTATTAGTTTAGCTTTGAATTCGTTGGAATTAATTCATTATGAATTTGAGTTGTATTTGT GATTTAAAATGGTTAGCTGGTTACAGATCAGTTTGTTACATTGTTTCTAAATTTGTTATTACTTTGTATGACTTTGCAGA ACTTGGAGTTGGTAATTCAATCTGATTCCTTTTAGTTTAGCTTCGAATTCGTTGGAATTAATTCATTATGAATTTGAGTT GTCTTTGTGATTTAAAAAGGTTAGCTGGTTATGGATCAGTTTGTTACCTTGTTTCTAAATTTGTTATTACTTTGTATGAC TTTGCAGAACTTCCTGAAAGATCTTATGGTGCCGATTGCCGCATATATCTTCCTGATAACCCTACGAGCAGGTTTAAGAA TGTTTATGTATGATTTCTTCTTTCACAACCTTGTGGTTTTGGCAGTTTTCTCCAAATATCAGTTTATTCTTTGCTTTATC ATATTTTGATCTAACACAGGTTATATGTTATGCTTCAATTTTCAGGAGACACTTTTTGATGAGTTTGTTCTTGCTCACAT TATTGGGTGGTGGGGGAAGGCCATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTGGTTTTGAGTGTATGG AGGTTAGCCCTGATCTTAATAATAAACTCTATGGTTTTTCATATATGTTTAGTTGTGAGTTAGTTTATCAATAAAGCTTC TCTTTTTTCTTGTTTCGGTTTATATATTCTGTATTGTTTACAAACCATTCTATATTGGCATTTTCAGTTTACTTTTCGTC ACATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTATTCTTGACATCTTCATCTGCAATTGGTTTGGTAAGAGT CTTGGATCAATTTTTATTCAACTTTTTGGAAAGTTGCCAGGTTGCATGTGGTTTATTAGTTGAAGCATGAACATAGGTAT TATATCATCATGCCAAAAATAGGTTTCAATGGAATGCATTTTAAAAATTTCGAAACCAGGGAGCCCCACAAATGCAATTT GCAAAAGCTTGTAGGACACTAATACTGGTCAATGTATCTTTACTTTAAATTTTAAAGGTGGATGGAATTGTGTATTTGCT TTTATCTTGGATGAAAATTCTTGCATTGAATTTCATACAATTGTTAAGAATTTGAATTGAATTATCTGATCTCTCCTCCT CCTGCCCTTCCCCTAGAAACTAGAAAGCTACATGACTCAGTTTTTTGATGCGAGTCTAGTATATATATTTTTTCGCATTA TTTTGTAGTTTATTCCTCCTGGGGTTAAAATTGTTAGAGCTGATTGTGACATTTTTTTTTACTTGGAATATGCAGGAATT TGGGCAGGAATGCGTACTGTTCGGTACTTTGATGGGAAAACATACAACTGGGTTGGCTTAAGCCGCCAACCTAATATAAT GGGAAAAGTATGTTTTCTGATTTATTTTCTTCTCATCACTCACCCGTTTTTCCATTATGCTTGAATCTGTAATTTCCATT GAAACTGAAATCACAGTAACCTCTATAATACTTTTCCTTTGCCTATTGGATCAATAGGGAATATTGATAAATATGTAACT AGTACAGTCCTTCCACTTTCACCATGTGAAAAAAGTGAATCAACTTTGACAGAATGTGTAGTTAATTTTCTGTTGCTCTT AATTTGTTATCATTGCTAAGAAGACATATGTGACTTAGTGCTCTTCGCTACTCTTTCATTGTTATTAGGTGAAACGAACA TTAAGCCAATTCACCCCCGCTCAGTGGGACAAAGATGAGTGGCATCCATTGCTTGGTCCATGGCGTTTTGTTCAAGTCCT CAGTCTTTGCACTGTATTTTTGACAGTAGAGCTCAACACATTCTTTTTGAAGTTTTCTCTGTGGATACCGCCACGAAATT CAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACTATTCGCGAGTACAATTCATACCTTCAAGAT AGGTACATTGTCCATCTCTCTAGTTTCATTGACAAATAAAATAGTATTCAATTGTTCTATTTGCCCGTTCAGAATTGTTA TACTGCCTACTCCAGTTATCTATCGTTCATTTTGCATAATGTCTTAAATTTTCGTCCCCCTCCTAGACATTTTTTCTGGT TCCGTTCAGGGTGGAATTGAAGCATCCTAATGAATTCTTAGCATTTTATCTAATCATGTGTTCTTTGTGAAATTTTCAGG ACGCCAGTGAAAAAGGTTGGAGCATATTGTTGGTTGTCCCTTGCCATTTGCATTGTAGAACTTCTGATTTGCATAAAGTT TGGACATGGTAAGTTTCCTAATATGTGATATGTCATGTTAATGTTTATTAATGTATGGATGATATTTGATTAACTGATTA CTCTCACTCATTGTGTTTCCACAGGGTTGTATCCTAAGCCAATGCCTTTATGGCTAGTAATCTTTTGGTCATCTATAGGA GTGGCTATTTTTACATTTTTGGTTTTGTGGTCTTGGCAAATCCATCGGAGTCTTGGGAAAAAGAGGCGATGA
CDS sequence (LotjaGi5g1v0333600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGCATGGTTCATGGGATGGCTGTTGTTTACCTGGTTGCCCTCACATTCTTGCTTTTTCAGAAGCGTGATGATGC TCGGCAGTTTATGAAGTTTCTTCATGGTGATCTTGGAGTTGAACTTCCTGAAAGATCTTATGGTGCCGATTGCCGCATAT ATCTTCCTGATAACCCTACGAGCAGGTTTAAGAATGTTTATGAGACACTTTTTGATGAGTTTGTTCTTGCTCACATTATT GGGTGGTGGGGGAAGGCCATATTGATTCGTAATCAGCCCCTTCTTTGGGTGTTATCAATTGGTTTTGAGTGTATGGAGTT TACTTTTCGTCACATGTTACCAAATTTCAACGAGTGCTGGTGGGACAGTATTATTCTTGACATCTTCATCTGCAATTGGT TTGGAATTTGGGCAGGAATGCGTACTGTTCGGTACTTTGATGGGAAAACATACAACTGGGTTGGCTTAAGCCGCCAACCT AATATAATGGGAAAAGTGAAACGAACATTAAGCCAATTCACCCCCGCTCAGTGGGACAAAGATGAGTGGCATCCATTGCT TGGTCCATGGCGTTTTGTTCAAGTCCTCAGTCTTTGCACTGTATTTTTGACAGTAGAGCTCAACACATTCTTTTTGAAGT TTTCTCTGTGGATACCGCCACGAAATTCAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACTATT CGCGAGTACAATTCATACCTTCAAGATAGGACGCCAGTGAAAAAGGTTGGAGCATATTGTTGGTTGTCCCTTGCCATTTG CATTGTAGAACTTCTGATTTGCATAAAGTTTGGACATGGGTTGTATCCTAAGCCAATGCCTTTATGGCTAGTAATCTTTT GGTCATCTATAGGAGTGGCTATTTTTACATTTTTGGTTTTGTGGTCTTGGCAAATCCATCGGAGTCTTGGGAAAAAGAGG CGATGA
Protein sequence (LotjaGi5g1v0333600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRMVHGMAVVYLVALTFLLFQKRDDARQFMKFLHGDLGVELPERSYGADCRIYLPDNPTSRFKNVYETLFDEFVLAHII GWWGKAILIRNQPLLWVLSIGFECMEFTFRHMLPNFNECWWDSIILDIFICNWFGIWAGMRTVRYFDGKTYNWVGLSRQP NIMGKVKRTLSQFTPAQWDKDEWHPLLGPWRFVQVLSLCTVFLTVELNTFFLKFSLWIPPRNSVVIYRLILWWLLAIPTI REYNSYLQDRTPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKPMPLWLVIFWSSIGVAIFTFLVLWSWQIHRSLGKKR R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 320 | 320 | 4.1E-198 | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 320 | 320 | 4.1E-198 | – | |
| Pfam | 1 | 278 | 278 | 1.0E-104 | ||
| TMHMM | 4 | 21 | 18 | - | – | |
| Phobius | 6 | 22 | 17 | - | – | |
| Phobius | 23 | 93 | 71 | - | – | |
| Phobius | 94 | 113 | 20 | - | – | |
| Phobius | 114 | 118 | 5 | - | – | |
| TMHMM | 119 | 141 | 23 | - | – | |
| Phobius | 119 | 140 | 22 | - | – | |
| Phobius | 141 | 194 | 54 | - | – | |
| TMHMM | 190 | 212 | 23 | - | – | |
| Phobius | 195 | 218 | 24 | - | – | |
| Phobius | 219 | 223 | 5 | - | – | |
| Phobius | 224 | 244 | 21 | - | – | |
| Phobius | 245 | 255 | 11 | - | – | |
| TMHMM | 256 | 278 | 23 | - | – | |
| Phobius | 256 | 282 | 27 | - | – | |
| Phobius | 283 | 287 | 5 | - | – | |
| Phobius | 288 | 310 | 23 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 311 | 321 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phosphatidylserine biosynthetic process | The chemical reactions and pathways resulting in the formation of phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine. |
Expression pattern of LotjaGi5g1v0333600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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