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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0335100 |
| Transcript ID | LotjaGi5g1v0335100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid permease; TAIR: AT2G01170.1 bidirectional amino acid transporter 1; Swiss-Prot: sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog; TrEMBL-Plants: tr|A0A151U749|A0A151U749_CAJCA Putative amino-acid permease C15C4.04c; Found in the gene: LotjaGi5g1v0335100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65211728..65214627) extracted from Lotus japonicus Gifu genome v1.2.
TTCGTGTATGGCTGGCTTCTAGCTTCTGCATTCACCATGCTTGTTGCACTGTCAATGGCTGAGATTTGCTCATCTTATCC AACATCTGGTGGTCTTTACTATTGGAGTGCCAAGCTTGCTGGCCCTGAATGGGCACCTTTTGCTTCCTGGATTACTGGCT GGTACTGTAACTCCCTGCTTTTTCTCCATTGTATTTTTCAACTAGGACTATTTCATTCCTTGTTTGTAAGTGTTAGAATT GACTCTCCACTGTCAAAACCAATTATGGAATGAAGCTACAACGTTTGCTTCTGCGGTGAATATAGTTAATTGTAGGATTT TACAACTGGATTTCATAACATTACCCTACAAAAAACACTTTTCTAATACTCAAACATGAATCACTTTGCTTTTGATTCAC TTTTATTTATCATAATCAATGTTACTAAAATCAATTCTAACAACGCTGATCCAAACAGACACTAAGAAAGAAGTACCATT ATAATATGTATAGCTTTTTCTACCAAGGCAGTGAACACCAGCTATACTAGGCAATAGCTATGTATTAGACAATGTGAGGA CATAAACAGAAAGTTATTCATCTAATACAAATAGCATTCTTGCTTAACAAACAAATCAAGCCTAATTAAAACAAGATATT AAACTGCCACATTCCTTTTTCCTGATTTGTATTGCATGGTTTCTCTTTTCATGCAGGTTCAACATTGTTGGCCAGGTACT GTTGATAATTCATATTCTAGAATTTCAACATCATACACTTTTCACTGGGAGATCAAACTTGTGTAGGATGTAGATTTCTA ATGATCCATATGATGCTATAAAAAAAACTTATTCCCTTTCTTGTGCAGTGGGCAGGGACTACAAGTGTAGATTTTTCACT TGCACAACTAATTCAGGTTATCATTCTTCTCAGCACTGGTGGGAAAAATGGTGGTGGATACATGGCTTCTAAATATGTAG TTATTGCTATCCATGGTGGGATTTTGATCCTGCATGGTATAATAAACAGTCTTCCTATTTCTGTGATATCATTCTTAGGA CAGTTGGGTGCTATCTGGAATGCTTTAGGTATGAAGAACTGAAATTCCCTATTTCATTTATAACCTGTTTGGATGAGGAT AAAAGAGCATTTACTGAGTTACTGGAGCTTATCTAATGCTTTTTCCAGTAGATAAGCTTCAATTAAGTGTTCTTTTATCC ATATCCAAACTGACAGTATGGGGAAAAGCCTTTTGTTTTAACATCTAATTTTTAGGTGTTTTTGTACTTATGATTCTGAT TCCATCTGTTGCAACTGAAAGGGCCAGTGCCAAGTTTGTTTTTACTCATTTCAATGCTGCTAATGGGGATGGAATCCACA GCAGACCCTATATCTTTCTCTTGGGACTTCTAATGAGTCAGTATACACTTGCTGGGTATGATGCATCAGCTCATATGGTA AATCCTTTCTTCATTTTTTTCTCTTTCCTCAGAACTTGTTGGCTTGTGGAAATTTCATTTCCAGATAAGCTATAATATTA TTTATAAGAAAATAGTAAAGATGTATTGTCAGAAGAGCTAAAATCAGTTTCATGTTAACTCAAGCTTGGTCCTTTTTCTT TGGCCTCAACGTGATTTTTTCATCCTCAAGGACTTCTAAGAATTTCACTCGAACATGTTTTAATGATGAAAATCCACATA CAAGAATATTAGAAGTGCTTATGTGCATGAGCAATGTGAAACCAAATATGTACTTAATCTTTTGATAAGATCTGGATGTA TTAAAAACGAAACTGTCACTTTTATTGGTTGAAACTTGCATTTTCAGACAGAGGAAACCAAGGGTGCTGATAGAAATGGA GCAAAAGGAATTATCAGCTCTGTTGGGATATCTATTATTGTTGGATGGGGTTATATACTAGGCATTACCTTTGCAGTCAC TGACATCCCTTACCTTTTGAGTGAAAATAATGATGCTGGTGGGTATGCTATTGCTCAAATGTTTTATCTGGCATTCCAGA GAAGATATGGTAATGGAATTGGGGGTATTATTTGTTTGGCAATAGTTGCTGTTGCCATATTTTTCTGTGGCATGGGTTTA GTTACCAGCAATTCAAGGTAGCTATACTTTCTCGTAAGGTCTTTTTCCATAAAAGAGGGATTTGTTGCATGTTTGGATAC ACATTAGAAAATCACGGTGAGTCAAAACTCAAAATTACAATGGACATAAGCAACTTCCCTTACTTTTGTAGCTGCCTATC GTGATTGTCTTCACCGTGGTTTTACACCGTGTATCTAAACATGCATTTAATATCTTATTTTGTTTCCAATATTTATAGTT ACTTATGATGCTTAAAATTTGCACAGGATGGCTTATGCTTTCTCAAGAGATGGGGCCATGCCTCTATCATCATTATGGCA TAAAGTTAACAAGCAAGAGGTCCCCGTATATGCAGTTTGGCTTTCCGTTTTCATATCATTTTGCATGGCACTAACGGTAA GCATTCTATTGTAAGATTTCATTTTAGCCATAGTTCTTAGCATTCTCTAACTCAATTCAAACTGTGTTGCAGTCTCTTGT AAGCATGGTGGCATTTCAAGCTATGGTCTCCATATCAGTGATTGTCCTCTACATTGCTTATGGCCTTCCTATATTCTTCA GGGTGACCTTGGCACAAAAGCGATTTGTCCCAGGACCTTTCAACTTGGGTAGTTATGGGGTCATTGTTGGGTGGATTGCG GTTCTTTGGGTGGTGACCATCTCCATCCTCTTCTCATTGCCTGTTTCTTACCCAGTAACCATTGAGACGCTTAACTACAC CCCAATTGCCCTTGGATGTTTGCTCATTCTTGTGATTTCTCACTGGATCATGAGTGGTCGCCATTGGTTTAAAGGCCCTA TAACCAATGTAAAGAACTGA
CDS sequence (LotjaGi5g1v0335100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTTGCACTGTCAATGGCTGAGATTTGCTCATCTTATCCAACATCTGGTGGTCTTTACTATTGGAGTGCCAAGCT TGCTGGCCCTGAATGGGCACCTTTTGCTTCCTGGATTACTGGCTGGTTCAACATTGTTGGCCAGTGGGCAGGGACTACAA GTGTAGATTTTTCACTTGCACAACTAATTCAGGTTATCATTCTTCTCAGCACTGGTGGGAAAAATGGTGGTGGATACATG GCTTCTAAATATGTAGTTATTGCTATCCATGGTGGGATTTTGATCCTGCATGGTATAATAAACAGTCTTCCTATTTCTGT GATATCATTCTTAGGACAGTTGGGTGCTATCTGGAATGCTTTAGGTGTTTTTGTACTTATGATTCTGATTCCATCTGTTG CAACTGAAAGGGCCAGTGCCAAGTTTGTTTTTACTCATTTCAATGCTGCTAATGGGGATGGAATCCACAGCAGACCCTAT ATCTTTCTCTTGGGACTTCTAATGAGTCAGTATACACTTGCTGGGTATGATGCATCAGCTCATATGACAGAGGAAACCAA GGGTGCTGATAGAAATGGAGCAAAAGGAATTATCAGCTCTGTTGGGATATCTATTATTGTTGGATGGGGTTATATACTAG GCATTACCTTTGCAGTCACTGACATCCCTTACCTTTTGAGTGAAAATAATGATGCTGGTGGGTATGCTATTGCTCAAATG TTTTATCTGGCATTCCAGAGAAGATATGGTAATGGAATTGGGGGTATTATTTGTTTGGCAATAGTTGCTGTTGCCATATT TTTCTGTGGCATGGGTTTAGTTACCAGCAATTCAAGGATGGCTTATGCTTTCTCAAGAGATGGGGCCATGCCTCTATCAT CATTATGGCATAAAGTTAACAAGCAAGAGGTCCCCGTATATGCAGTTTGGCTTTCCGTTTTCATATCATTTTGCATGGCA CTAACGTCTCTTGTAAGCATGGTGGCATTTCAAGCTATGGTCTCCATATCAGTGATTGTCCTCTACATTGCTTATGGCCT TCCTATATTCTTCAGGGTGACCTTGGCACAAAAGCGATTTGTCCCAGGACCTTTCAACTTGGGTAGTTATGGGGTCATTG TTGGGTGGATTGCGGTTCTTTGGGTGGTGACCATCTCCATCCTCTTCTCATTGCCTGTTTCTTACCCAGTAACCATTGAG ACGCTTAACTACACCCCAATTGCCCTTGGATGTTTGCTCATTCTTGTGATTTCTCACTGGATCATGAGTGGTCGCCATTG GTTTAAAGGCCCTATAACCAATGTAAAGAACTGA
Protein sequence (LotjaGi5g1v0335100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVALSMAEICSSYPTSGGLYYWSAKLAGPEWAPFASWITGWFNIVGQWAGTTSVDFSLAQLIQVIILLSTGGKNGGGYM ASKYVVIAIHGGILILHGIINSLPISVISFLGQLGAIWNALGVFVLMILIPSVATERASAKFVFTHFNAANGDGIHSRPY IFLLGLLMSQYTLAGYDASAHMTEETKGADRNGAKGIISSVGISIIVGWGYILGITFAVTDIPYLLSENNDAGGYAIAQM FYLAFQRRYGNGIGGIICLAIVAVAIFFCGMGLVTSNSRMAYAFSRDGAMPLSSLWHKVNKQEVPVYAVWLSVFISFCMA LTSLVSMVAFQAMVSISVIVLYIAYGLPIFFRVTLAQKRFVPGPFNLGSYGVIVGWIAVLWVVTISILFSLPVSYPVTIE TLNYTPIALGCLLILVISHWIMSGRHWFKGPITNVKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 83 | 83 | - | – | |
| Gene3D | 1 | 424 | 424 | 1.8E-23 | – | |
| PIRSF | 1 | 431 | 431 | 9.4E-43 | – | |
| Pfam | 2 | 410 | 409 | 6.2E-54 | ||
| PANTHER | 2 | 436 | 435 | 9.3E-247 | – | |
| PANTHER | 2 | 436 | 435 | 9.3E-247 | – | |
| Phobius | 84 | 110 | 27 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 111 | 115 | 5 | - | – | |
| TMHMM | 115 | 134 | 20 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| Phobius | 135 | 196 | 62 | - | – | |
| TMHMM | 154 | 176 | 23 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 197 | 219 | 23 | - | – | |
| Phobius | 220 | 251 | 32 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 252 | 274 | 23 | - | – | |
| Phobius | 275 | 306 | 32 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 307 | 330 | 24 | - | – | |
| Phobius | 331 | 335 | 5 | - | – | |
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 336 | 355 | 20 | - | – | |
| Phobius | 356 | 366 | 11 | - | – | |
| TMHMM | 367 | 389 | 23 | - | – | |
| Phobius | 367 | 391 | 25 | - | – | |
| Phobius | 392 | 402 | 11 | - | – | |
| Phobius | 403 | 422 | 20 | - | – | |
| TMHMM | 404 | 423 | 20 | - | – | |
| Phobius | 423 | 437 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0335100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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