Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi5g1v0335900
Transcript ID	LotjaGi5g1v0335900.2
Related isoforms 2	LotjaGi5g1v0335900.1 LotjaGi5g1v0335900.3
Lotus japonicus genome version	Gifu v1.2
Description	alpha/beta hydrolase family protein; TAIR: AT1G15060.2 alpha/beta hydrolase family protein; Swiss-Prot: sp\|Q3T0A0\|ABHD1_BOVIN Protein ABHD1; TrEMBL-Plants: tr\|K7N313\|K7N313_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0335900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:65305716..65309131) extracted from Lotus japonicus Gifu genome v1.2.

CGAATTCAACGACACTGTCGGTGTTCCATTCTTCCAATAATGGCTGTTTCCATCCAATACGATGCTCTCTCTTCTCTCTG CAGAGTCTCTTCTTCAACCTTCCGCTCTCTCCCACGCGCCACCGCTTCCTTCCGCCTCAGAGCCTTCTCCACCACCGTCA ACGATAAGCCCTCCATTTGCACCGCCGATGAGCTCCACTATGTCTCCCACTCCAGTTCCGATTGGAGACTCGCTCTCTGG CGCTACCACCCCAATCCTCAGGTCTTCAACTCTTCCATTTTAATGCCTGTATTTATACAAATACAAGTTTCTTTATAGAA TGTAAATAAAGGATATGAACATGTCAAGACTTATTCTTCATCATGTAATACAATACTTATTTCACAGGCCCCTCCCAGGA ATCACCCTCTGCTGCTCTTATCAGGAGTGGGGACCAATGCAGTTGGATATGACCTTTCCCCTGAGGTAATCTTTTTGTCT GTGTTTCTGCTCTGCATATAGTTGTCCTTTGCAGTGCCTGTATTTTACTGTTCTTTGGAAGATGATTTGCTTATGCCAGG AAACTTGTTATGAGGTTCAGTGGGCAGCCATGAACCTTAGAAAAAATTCTTGGTGTGTCAAATTGATTAATTAGATGATT CAGTGTATGCGAGTCTCATGGGTATGTCGATCAAATAAATCATATCTCTGAATTGATGTCATGACTTATTTTTATCAATA TCCATCTTTTTATCCTTGTTTTTCACACCCTAACATCTTTCTTTAGCATTAGGAATTATGGTAAGATCTTTTATGGCAAT GTTTAGTAACTTAGGATTCAGAGGCTTTTGAGTTTTGACACTCATGTACTATTTTAAATGGCTGTTTGGTAGCAAAATTT CGAGTGACTCTTCCCTTAAAGAATGCACTGAAGATATATATTTTGACTCTATGTTTTGCTTTCCTCCATAATAATCAACA TAGTCATGGTTAAAACTTAATGTTTCCTCTGTATTACTTTATGCAAGTAACCGATGTTTGAGTAAATGGCATCGTCTGCC TAATCATAGCTGGTTAGTTGTATTTTCTTGATTATTACGTTTTTTCTTTTCTGGTTTTATGTATCAGGCTTCCCACTAAC ACATGATATATACTGCAGTCATCATTTGCTCGATACATGTCTGGTCGGGGATTCGAAACTTGGATTCTAGAAGTACGAGG GGCTGGGTTGAGTCTTCAGAGTTCAAATTCCAAAGATATTGAACAGTCGGCACAAGCAATTTCTCAGAAGATGGAGGCTG CTGCTTCAGAAAGTGCAACCAATGGAGCTGTGCCTTCAAAAAATGAATTGAGTGGTATTTCTTCTACAGCATCTGAACTT GACATTTCTGTCTCAAAAGGAATAGAAACTGAGAATGTGGCTGTCACCGGAGAACTAACTAGGTTAGCTACTGTTTGGGA TGAATCGAAGTTGGTGGCAAGGTTGTCTGAGACTTTTCTACGTTTGTCAGAAAGAGTCTCTGGGTTTCTCAGTGAAAGTC AATCAAAGGTCATGTTTACCAAACTACTTGATCAGATTTCAAAACTTTTGGTGGATTCTCCATTATACGAACAATTCAAT GAGATAAGGGGAAAGATTACAACTTTGTTGGAAACAAGACAAAACTCTGGTATTACTAGTCAAATAACTGACCTAAGTGA AAAGCTAGTAGATATTATTGAGGAAGGTCAGCGATCTGTTTCTCCTCCATTATTTGATCTACAAGCTCGCTTTACTTCTA CCATAGAAGATTTTCAGAAGCAACTTGACTTGATGGTGAAGTACGATTGGGACTTTGATCATTACTTGGAAGAAGATGTT CCTGCTGCGGTGAGATGACATCTTATGATGTTGGAAAGCCATACATTCACGATTAATTTTTTGACATTATTGAACTATTA TATCATTTGCAATACCTTCATTTTTTCTGTTGTTTACAGTAAATTTTCTCTGGCTGCATATATCTTTATGACTTTTTGGT TTACCAATACAGATAGAATACATAATGAAAGAAAGCAAGCCGAAAGATGGAAAGTTACTTGCAATTGGACACTCCATGGG TGGTATATTGCTTTATTCAATGCTATCACGTTTTGGTAAGTTTCCAGCTTCTGGCAGTGCCAGTTGACCATTAACCATTT AGCTTTTATTTGTTATCAAATCCTTATTTTTTAACTCTGTTGTTTGACATTTATTTTGGTCTAAATTATAATGTCCAATC ATTCTTTAATGGTGAGTCAAGGCTTGGTATTTTGAATTGGAATTGCCTTGATAGTTTGACCTATATAGGCTTTTTTGTGT TCCTCAATGTTAAATATTAGACTACCTTCTATCTAATTTATTCTCCTTCTTGTGTGGCATATTAAAGTTTTCTCCACCCT TGCAGTTGAGTCACCAATAATAATCTATATCAATTTCTGAACCCAACTGGAACTTTCCTGATTGACATTTAAATTGTCTG AAACAGAAACAACTATGTTTCTGAGATTCAATCCATATTTTGATATAGCATAGGATCAAGTCAAGGATAATGTTATATTA CATATATTTTAAAAGTCTTCACATGATTTGTCTTCTGCATGAGAGAATACAAATTTGTCAAACATGTGACTTTGAGACTT TGAGTTTGTTTATTAAAATTCATAATGGAAGTAGGATTTAATCTTCCTTATATCTACGTGCAGCTGGTAACTTTAGCTTG ATTATCTTTTTACATGAATGATGCTACTCCAAACAACTTATATCTCTTCTGTTTGACCATAATCCTTGCTATTCTGCGTC TTTAACTTTTAGCTGTGATAGCATCTTAACAAAAGTATCAATAATACATAATAACGTGTTGCTACTTACTAGTAAGCATG AAAATGTATATCTTGGTTCGCAAGTAGCGTGGCCCTTTTGCATATTGAAAGACGTGTATTTGATCTGCTTAGACATGTAC AAAACAAATATGTAAGGTATTTAGTTAGCATTTGTTATCATGTAATGCAAGGTTTTGAAGGTAAGGAATCCAGACTGGCT GCTGTAGTTACACTAGCATCATCTCTGGACTACACATCATCCAAATCATCTCTTAAATTACTCACACCGCTTGTAAGTGG TTGGTTTCAGCTGTTTTTGGTTACTTCCTACATAGATTTAGAGGTTAACTCGCCATATATCTGCTAAGGTACTAAATTCA GTCATTGTTAAACAGGCAGATCCTGCACAGGCTCTGAATGTCCCTGTTGTTCCTTTAGGGGCAATTTTAGCAGCAGCTTA TCCTCTTTCATCTCGTCCACCATATGCATTATCATGGTTAAATACTTTGATTTCAGCTGAGGGCATGATGGAACCTCATT TATTGAAAAGGCTGGTCTTTAACAACTTTTGTAAGTTCTATCCTAAAGAAATGTAA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0335900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGTTTCCATCCAATACGATGCTCTCTCTTCTCTCTGCAGAGTCTCTTCTTCAACCTTCCGCTCTCTCCCACGCGC CACCGCTTCCTTCCGCCTCAGAGCCTTCTCCACCACCGTCAACGATAAGCCCTCCATTTGCACCGCCGATGAGCTCCACT ATGTCTCCCACTCCAGTTCCGATTGGAGACTCGCTCTCTGGCGCTACCACCCCAATCCTCAGGCCCCTCCCAGGAATCAC CCTCTGCTGCTCTTATCAGGAGTGGGGACCAATGCAGTTGGATATGACCTTTCCCCTGAGTCATCATTTGCTCGATACAT GTCTGGTCGGGGATTCGAAACTTGGATTCTAGAAGTACGAGGGGCTGGGTTGAGTCTTCAGAGTTCAAATTCCAAAGATA TTGAACAGTCGGCACAAGCAATTTCTCAGAAGATGGAGGCTGCTGCTTCAGAAAGTGCAACCAATGGAGCTGTGCCTTCA AAAAATGAATTGAGTGGTATTTCTTCTACAGCATCTGAACTTGACATTTCTGTCTCAAAAGGAATAGAAACTGAGAATGT GGCTGTCACCGGAGAACTAACTAGGTTAGCTACTGTTTGGGATGAATCGAAGTTGGTGGCAAGGTTGTCTGAGACTTTTC TACGTTTGTCAGAAAGAGTCTCTGGGTTTCTCAGTGAAAGTCAATCAAAGGTCATGTTTACCAAACTACTTGATCAGATT TCAAAACTTTTGGTGGATTCTCCATTATACGAACAATTCAATGAGATAAGGGGAAAGATTACAACTTTGTTGGAAACAAG ACAAAACTCTGGTATTACTAGTCAAATAACTGACCTAAGTGAAAAGCTAGTAGATATTATTGAGGAAGGTCAGCGATCTG TTTCTCCTCCATTATTTGATCTACAAGCTCGCTTTACTTCTACCATAGAAGATTTTCAGAAGCAACTTGACTTGATGGTG AAGTACGATTGGGACTTTGATCATTACTTGGAAGAAGATGTTCCTGCTGCGATAGAATACATAATGAAAGAAAGCAAGCC GAAAGATGGAAAGTTACTTGCAATTGGACACTCCATGGGTGGTATATTGCTTTATTCAATGCTATCACGTTTTGGTTTTG AAGGTAAGGAATCCAGACTGGCTGCTGTAGTTACACTAGCATCATCTCTGGACTACACATCATCCAAATCATCTCTTAAA TTACTCACACCGCTTGCAGATCCTGCACAGGCTCTGAATGTCCCTGTTGTTCCTTTAGGGGCAATTTTAGCAGCAGCTTA TCCTCTTTCATCTCGTCCACCATATGCATTATCATGGTTAAATACTTTGATTTCAGCTGAGGGCATGATGGAACCTCATT TATTGAAAAGGCTGGTCTTTAACAACTTTTGTAAGTTCTATCCTAAAGAAATGTAA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0335900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVSIQYDALSSLCRVSSSTFRSLPRATASFRLRAFSTTVNDKPSICTADELHYVSHSSSDWRLALWRYHPNPQAPPRNH PLLLLSGVGTNAVGYDLSPESSFARYMSGRGFETWILEVRGAGLSLQSSNSKDIEQSAQAISQKMEAAASESATNGAVPS KNELSGISSTASELDISVSKGIETENVAVTGELTRLATVWDESKLVARLSETFLRLSERVSGFLSESQSKVMFTKLLDQI SKLLVDSPLYEQFNEIRGKITTLLETRQNSGITSQITDLSEKLVDIIEEGQRSVSPPLFDLQARFTSTIEDFQKQLDLMV KYDWDFDHYLEEDVPAAIEYIMKESKPKDGKLLAIGHSMGGILLYSMLSRFGFEGKESRLAAVVTLASSLDYTSSKSSLK LLTPLADPAQALNVPVVPLGAILAAAYPLSSRPPYALSWLNTLISAEGMMEPHLLKRLVFNNFCKFYPKEM

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PIRSF	PIRSF031088 View details on PIRSF031088 Search for proteins/transripts with this domain View external data on PIRSF031088	2	470	469	1.5E-182	IPR016969 Show description in modal box View details on IPR016969 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11005:SF119 View details on PTHR11005:SF119 Search for proteins/transripts with this domain View external data on PTHR11005:SF119	35	465	431	2.0E-190	–
PANTHER	PTHR11005 View details on PTHR11005 Search for proteins/transripts with this domain View external data on PTHR11005	35	465	431	2.0E-190	–
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	49	144	96	8.5E-9	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	54	417	364	8.32E-17	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	142	164	23	-	–
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	312	466	155	1.9E-13	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00708 View details on PS00708 Search for proteins/transripts with this domain View external data on PS00708	333	363	31	-	IPR002471 Show description in modal box View details on IPR002471 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0004252 View details of GO:0004252 AmiGO InterPro QuickGO	Molecular function	Serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).	Subterm of View details of GO:0004175 View details of GO:0008236
GO:0006508 View details of GO:0006508 AmiGO InterPro QuickGO	Biological process	Proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.	Subterm of View details of GO:0019538

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0335900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi5g1v0335900.2