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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0336600 |
| Transcript ID | LotjaGi5g1v0336600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fiber protein Fb34; TAIR: AT1G68220.1 aerobic coproporphyrinogen-III oxidase (DUF1218); Swiss-Prot: sp|P01031|CO5_HUMAN Complement C5; TrEMBL-Plants: tr|I3SEN8|I3SEN8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0336600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65399092..65400388) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTTTCCGTCACTATTCTAGTCCTCATCATCGCTCTGCATCTCATAGCCTTCGTCTTCGCCTTTGGCGCCGAACG ACGTCGTAGCGAGGTAACCCTATCTCTCTCTCTCTCTCTCTTCCTTTCCATTGATTCACCTCTCTCTCAAGTCTCAACAA ATCTGGTTTGTCGTTTTCAGGCTAAAGTGGTCCCCGACGAGTACGACGACCAAACCTACTGCCGTTACACCACCGACGCC TCCACCGTCTACGGCCTCGCCGCCTTCCTCATCTTGCTCCTCAGCCACGGTATCCTCAACGTCGTCACCAGATGCTTCTG CTGCGGCAAAGGCCTCGTCTCTGGTTGCTCCACCACTTTCGCCATCCTCTTCTACATTCTCTCATGGTAACAACTTTCTC GATTAACCTAATTTTCAAGTTTTGTTTGAATTTGTAGAAACAAAGTTGATTGTTGTCATAAATAGAAATAATCATTATCT TAGAGACAAAACAAATTGAATTCAATGGAGTTTGGCTTTTGGTTTGAATTAGGAAAGATATTCAATGTTTAGGGTTTAGC ATGTTTTAATCAGCTTTTATTTGCTAGAATCGGTCGAAAGGTTCTCCCTAGAAATGATTTTGGATTTTAAATAAATTATA GAAGGATTTCTTAGCAAGTTTCGAAACACATCGTTTAATCAATGTCTGGAGCCAAAGTCAATTAATTATGATTTATGAGA GAAGCTCTTCTGAGTAGCTTCTATGCATTAGAATTGATTCTAAGAAAAAGAGAAGCTGATTGAAACATGCTATAGATTAA TCAGAATTATCAAATATGGCGAGTCTTTGGCTCTCTGCCATAGCCGATATCCCGCCATAATCTGTCCCATACTGCCATGA TGCGCCATCCGCCGTTATCATTTGTCAAATATGGCGGGTTTTTGGCAATTCGCCATTAAAAACATTGAGAATTTGAGATT GATTAAAAATGGAAGGAATTTTTTTAATTATTATTGTTGTTATTGTTAAATCAGGTTAAGTTTTTTGGGAGCGGAGGCGT GTTTGTTGGCAGGGTCAGCTAAAAATGCATACCACACGAAGTACCGAAGGGACTTTGGGGCGCATGACTTGTCCTGCTCC ACGCTCCGCAAAGGTGTCTTTGCTGCTGGGGCTGCCCTCACATTGTTCTCCATGCTGGTCTCCATTTTGTACTACTGGGC ACACTCCAAGGCTGACACTGGATTCTGGGAGAAGCACCGTAATGAAGGTCTTGGATTGGCCACCCACCACCAGGGTGCTG ATTCTGACAAGCCCTGA
CDS sequence (LotjaGi5g1v0336600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTTCCGTCACTATTCTAGTCCTCATCATCGCTCTGCATCTCATAGCCTTCGTCTTCGCCTTTGGCGCCGAACG ACGTCGTAGCGAGGCTAAAGTGGTCCCCGACGAGTACGACGACCAAACCTACTGCCGTTACACCACCGACGCCTCCACCG TCTACGGCCTCGCCGCCTTCCTCATCTTGCTCCTCAGCCACGGTATCCTCAACGTCGTCACCAGATGCTTCTGCTGCGGC AAAGGCCTCGTCTCTGGTTGCTCCACCACTTTCGCCATCCTCTTCTACATTCTCTCATGGTTAAGTTTTTTGGGAGCGGA GGCGTGTTTGTTGGCAGGGTCAGCTAAAAATGCATACCACACGAAGTACCGAAGGGACTTTGGGGCGCATGACTTGTCCT GCTCCACGCTCCGCAAAGGTGTCTTTGCTGCTGGGGCTGCCCTCACATTGTTCTCCATGCTGGTCTCCATTTTGTACTAC TGGGCACACTCCAAGGCTGACACTGGATTCTGGGAGAAGCACCGTAATGAAGGTCTTGGATTGGCCACCCACCACCAGGG TGCTGATTCTGACAAGCCCTGA
Protein sequence (LotjaGi5g1v0336600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVSVTILVLIIALHLIAFVFAFGAERRRSEAKVVPDEYDDQTYCRYTTDASTVYGLAAFLILLLSHGILNVVTRCFCCG KGLVSGCSTTFAILFYILSWLSFLGAEACLLAGSAKNAYHTKYRRDFGAHDLSCSTLRKGVFAAGAALTLFSMLVSILYY WAHSKADTGFWEKHRNEGLGLATHHQGADSDKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 185 | 185 | 2.6E-90 | – | |
| PANTHER | 1 | 185 | 185 | 2.6E-90 | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 53 | 28 | - | – | |
| TMHMM | 51 | 73 | 23 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| Pfam | 59 | 153 | 95 | 6.4E-24 | ||
| Phobius | 74 | 92 | 19 | - | – | |
| Phobius | 93 | 119 | 27 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| TMHMM | 140 | 162 | 23 | - | – | |
| Phobius | 140 | 162 | 23 | - | – | |
| Phobius | 163 | 193 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0336600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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