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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0341900 |
| Transcript ID | LotjaGi5g1v0341900.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|O22703|RZ1B_ARATH Glycine-rich RNA-binding protein RZ1B; TrEMBL-Plants: tr|A0A0L9U0Q2|A0A0L9U0Q2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65904468..65908838) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGCGAGAACTGTGAGCGATGGCTTCGAAGGAAGAGAATCGAATATTCGTTGGAGGGTTGTCTTGGGACGTGACGGAG CGTCAGCTCGAACATGCCTTTGATCGTTACGGCAAAATTCTTGAATGCCAGGTACCCCTTTTCCCCTTTCAATGTTGTTC TCAATTTCATACATCAATTGTTTCGTTTCCCAGAAAAAAATTGCATTTTAAGGGGGGAAATTATTGTTTCGAAACTGCAG TAATTGGTTTCAGAAGGGTATTTTTTTTAGTGAGATGTTGTCAGATTTACAGTTTCCTTTTTATTATCAGAATTGTTGTG GAAAAATGATATGTCCTTTATTGAATCTACCTGTTTTTAATAAAAAAAAATGAAATAAGTAGTACTAGCTTTTTGAATGA TTTCCATCAAGTTATAATGATATGATAGTACTATTAAGAGATCCTGATCTGTGTCGTCGAGATCGACCTGTAGTGGCTAA TAAGCTGTGGGGGCTCCGGGCTTTGGCCGAGTCTTCTGCTTAGGGAACTACTTGTTTCAGTGTTTTATCTGGTTTGGTGA TTTTTGTTTTTGGATTCCTAACTATCTTTTTTTCTCTTGTTTTCTATGTGTTTCTGGAGTGCTAGTTGTGAATCTTTTGA TCTTTGAGATGCTGTGGATGGGTTTTTTGAATGTTCTTTTGCCAGATTGATTTCTTCATGGATGAAGCTCATTTTCAAAA TTTTCTGATAAAATAATAGATTGTGGTAACTAGAGAGCTCGAGTTGGGGATTGGTATGGCTTGGATATGTGGAATTCGGT GCAAGGAAACTAGCCAAGCAAATATCAGTCTGACCTGTCTGCTATTTCGCAGAGATACTTGTTGTTTGTGCTTTGTGTTA GGTTTGAACGTAAAATCATCGTAATTTCAAATCGGTCTTTGGCAGTAAGATTGGGCTGACAAGTGGACAAAGATGATACC ATAGGATTCTTTTTGGAGTATGCTTTGGTATTCCTTCTTATGCATGGCTCACAGATCTATGTCTTGATTACGCCATGCAT TTGCTTCCTTCCTATTCTAGTTGTAAATCTATTATGCGGTGGCAGCACTGATGACTAGTAGAGGGATGCATGACAATCTT CTTACGATGGACACATCCCTTCTTTTGCTTATGGCTATAATCAATTATTGTTTGTTATATTATAGAGAAGTAGAACAAAC GAATTAAAGGCTGCAAGCTCACATGCTGCCCTGTGATCTTTTTTTTGTCTCCTTGTCATATTGATCTGTTATGACTTATG AGCACTGCTTCCGTTGTACCCGTTTCTTTAGTTGTGAAGACAGAGGCAACCGATGTCCAATCTTATGAACTGATAATGCA TTTGGTAAGGTGGCAGTTCTAGTGGTCCTGAAATTTGAAAAAAAGTTAAATGACATCATACATAATGCAGTTTCGGAGGA AGAAGGTAGTGGACTCTGTTTTTTATAGGAATGAGAACTCCCCACTAACTAATAAGTTGTTCCTTTCGATCTGATAAAGT GATTTGTTAGTAAGCTCAGGAAGTCTTACATATTTGCTTCAGTTGAGCAGTCCGATCTTGCTGCACCTTTGGCAGTTTAG GTACTTTCTTCGTGCAATATAAAGCTCAGTTGTTTGGTCAAATTTTCGCTTCTGCTTGATGCCATTGATCTTGCAAGATA TACTTATGTCTTATCAGCCAATCCAAACTGTGTGGGTATGACTATGCACCACCAACAGGTTCTACATCATTGCAGTTCCT GTAAGTACTTAAGTCCTGCTGAGCTCCCAAGTCTGAAGCATTGGAGATCATTTACAAATGCTGCTCAGATAGGCTGTTTC TGTCTTCATGATGAGATACTGTATTCACCAGTTGATCTGCGGTCTTCCTAGTATGACTACCAGTATTTAAGGTTTAATGG ACGCTGAGTTGGTTATAACTTCCTACTTTGGAACTGAATTGATTGGTTGGAACGGTTTTATTGGTTTTTAAAGGTTCTGC TTTTCTCAGTGTAGTTTTAGATGAACAGTTCTATCTGCATAGGAATGATTTTCTGCTCAAAATACTGGTGTGTTGGTTAA GTCAGCCAAGAGGCAGCAGAATTACGTAGTATGGTATATGTCTTCAGTATAGTTGATGTTATTTGTTTCAGTTGTTGCTC AGTGTTGTTTCTGCATAAGATTGATTGTATTTTTGCATCGGGTGAGGTGATTAATCATAGAGGATAGCTGCATGCTTAAG AATTGAAGCACGATCTCCATTAGGAATGCTGTCAATGCTATGCCTTGGTCTTGCATGTTGTCTGTCAGAATTTTGGAAGT TGTTTGGTGGCAGAGGAATTGTGTTTTGAAGAGCTTACCTATGTGATACTCATCATAAAATTGGAGGTGAGACACAATGA TCTGGTAACCACGGAAGTGGAAGCAACACGTGGGTTTTCATGATATGCCTTTTATTTGTGCTTCGTATTGTTTATTGTTA GCTCTTCCAGGTGAGATAATAATAGTACTCGATATAGCAGTGCTTTTCAAGTTGTCAGATGCTAGTATCATTTTGGGGGG ATTAGATCATTTAAAGGGCAATGATGAAGTTATGAACCAGTTTGCGAAACATGCTGAAATTTTAGTTCAGATTGTGGAAG TAATTGTTGTAAGAGGTATTTGTTGTCAAATATGGGGCTTGGGATTCCTCTGAATGGATTAGCTGACTGAAAACCATTTG GGGCTTTATCATTATAGCAGAGAAGTAAGTTGTCTGGTTATAAGTTTTGCTTCATAGTAAAATGCTGTTCACATAAATCA CGAAAATATCATACTGAAACTATTTACACAGCGAACAAGTGAACAACTCTCTGGAGTCATATGTTTTCCTTTTGAATATG CATAACTTTGTTCTGATTTGAATTTCCCATTCAATGTTAGATGCATCTTTATGTGGGCATCCTTTTATTAACTGTCAGCA ATTCTTGTGTAGTAGCTTATCTAGCAATTCTGTGACAGTGTGACTAATTTCTTGTGTTTCTACTGGTGAGTGGCTAATTT AAGCCTTGTTGAGTTGAGATCTACCTTTAAAATTCTGATATTTTTTTTCAGAGATGGAATCTTGGTAGAAACTCACAATA TTTATAAAGAACATATATCAAACAATATTGTTCGGGGTGGGGGACATGTTCTGTATGTTGTGCTTAATTGATATCTTTCT TGCAAGTGTTACAACAAGAGCTATGCAGTGGTATTGTGCATCATAAGCAACATATGTATTGTTTATTGTAAAAAATGGCA TTAAATATTGTTGGGAATTCGTTATATGTGTTGTTATTATCTATTACGAGGTTCTCAAGTTGTTCTTTCTGTAGATCATG ATGGAAAGAGATACAGGTCGTCCCCGAGGATTTGGGTTTATCACATTTGCAGACCGTAGAGGAATGGAGGATGCAATCAA GGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCGGTCAATAAGGCACAGCCCAAGATGGGTGGTGATGATGCAG ACCAAGGCTACAGAGGTGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGAGCTGGAGATAGGGTTGGACAGGATGAC TGTTTCAAATGTGGGCGTCCAGGGCATTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTGGTGGCCGCGGCCGTGGTGG CGGTTCACTTTCTTCACGTCCTAGGTTTGGAGGTTCTGGTGGACATGGGGATCGCCTTGGAGGTGAACGTGATCGATACA TTGATGACCGTTATGACGGAGGACGTTATGGAGATAGAGATCGTGTTGACAGCCGTGACTACAAATATGGTAGCCGTGAT CGCTATGCTAGTGACAGGTACACACAGCTTATTGTTGTTACGAAATCAATACTCTGATGTGTTTTCCATACCTTCAAAAC AGATTTAATGATGACTTTGGTTTAACGAAATACATTTTTCTCTGTTATTTCATTTAATTGATTAGGTTACTTGCCTCATT TATCATTTAGTAGTTGTACATGCTAATTCTTCATGATTGTATTATAACAGTTACCTCTCCAGTCTCCTTTTGTTATCTCA TGAGTCTATGGTTTTGTTATGATTTTTATTACTTCACTGAAACTGTGTAGGTATCCTACTAGTGGAGATCGATTTGCTAG TGATCGGTATGGTGGTGGCTCAGATCATTACTCACAAAATGGTTATGGCAAGGAGAGAGGCTATGACCGGTATGGCGGTG CACGAGGAGGTGCTGATAGGTATGGAAGTGGAGTGGCAGCTCGAGATGAAGGAAGGGGCTACAGGGGTAGGCCTGGTCCA TATGATCGCCCGAGCAGGGGTGGCCGTCCATCATCATTTGACCGCTACTGA
CDS sequence (LotjaGi5g1v0341900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGAAGGAAGAGAATCGAATATTCGTTGGAGGGTTGTCTTGGGACGTGACGGAGCGTCAGCTCGAACATGCCTT TGATCGTTACGGCAAAATTCTTGAATGCCAGATCATGATGGAAAGAGATACAGGTCGTCCCCGAGGATTTGGGTTTATCA CATTTGCAGACCGTAGAGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCGGTC AATAAGGCACAGCCCAAGATGGGTGGTGATGATGCAGACCAAGGCTACAGAGGTGGTGGCTACTCATCAGGTGGTAGGGG AAGCTATGGAGCTGGAGATAGGGTTGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCATTGGGCCCGAGATTGTC CTTTGGCAGGAGGTGGTGGTGGCCGCGGCCGTGGTGGCGGTTCACTTTCTTCACGTCCTAGGTTTGGAGGTTCTGGTGGA CATGGGGATCGCCTTGGAGGTGAACGTGATCGATACATTGATGACCGTTATGACGGAGGACGTTATGGAGATAGAGATCG TGTTGACAGCCGTGACTACAAATATGGTAGCCGTGATCGCTATGCTAGTGACAGGTATCCTACTAGTGGAGATCGATTTG CTAGTGATCGGTATGGTGGTGGCTCAGATCATTACTCACAAAATGGTTATGGCAAGGAGAGAGGCTATGACCGGTATGGC GGTGCACGAGGAGGTGCTGATAGGTATGGAAGTGGAGTGGCAGCTCGAGATGAAGGAAGGGGCTACAGGGGTAGGCCTGG TCCATATGATCGCCCGAGCAGGGGTGGCCGTCCATCATCATTTGACCGCTACTGA
Protein sequence (LotjaGi5g1v0341900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISV NKAQPKMGGDDADQGYRGGGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGGGGRGRGGGSLSSRPRFGGSGG HGDRLGGERDRYIDDRYDGGRYGDRDRVDSRDYKYGSRDRYASDRYPTSGDRFASDRYGGGSDHYSQNGYGKERGYDRYG GARGGADRYGSGVAARDEGRGYRGRPGPYDRPSRGGRPSSFDRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 114 | 114 | 2.9E-30 | ||
| SUPERFAMILY | 4 | 113 | 110 | 1.2E-33 | ||
| PANTHER | 6 | 148 | 143 | 1.2E-46 | – | |
| PANTHER | 6 | 148 | 143 | 1.2E-46 | – | |
| ProSiteProfiles | 7 | 85 | 79 | 19.996 | ||
| SMART | 8 | 81 | 74 | 3.9E-29 | ||
| Pfam | 9 | 78 | 70 | 5.6E-21 | ||
| MobiDBLite | 83 | 110 | 28 | - | – | |
| SUPERFAMILY | 104 | 139 | 36 | 3.27E-9 | ||
| Gene3D | 115 | 145 | 31 | 2.3E-8 | – | |
| SMART | 119 | 135 | 17 | 1.9E-5 | ||
| ProSiteProfiles | 120 | 134 | 15 | 11.383 | ||
| Pfam | 120 | 134 | 15 | 2.1E-8 | ||
| MobiDBLite | 136 | 284 | 149 | - | – | |
| MobiDBLite | 163 | 206 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0341900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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