Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0341900.5

Overview

Field Value
Gene ID LotjaGi5g1v0341900
Transcript ID LotjaGi5g1v0341900.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description RNA-binding protein; TAIR: AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein; Swiss-Prot: sp|O22703|RZ1B_ARATH Glycine-rich RNA-binding protein RZ1B; TrEMBL-Plants: tr|A0A0L9U0Q2|A0A0L9U0Q2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:65907781..65908838) extracted from Lotus japonicus Gifu genome v1.2.

TTATTATCTATTACGAGGTTCTCAAGTTGTTCTTTCTGTAGATCATGATGGAAAGAGATACAGGTCGTCCCCGAGGATTT GGGTTTATCACATTTGCAGACCGTAGAGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGCAT CATCTCGGTCAATAAGGCACAGCCCAAGATGGGTGGTGATGATGCAGACCAAGGCTACAGAGGTGGTGGCTACTCATCAG GTGGTAGGGGAAGCTATGGAGCTGGAGATAGGGTTGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCATTGGGCC CGAGATTGTCCTTTGGCAGGAGGTGGTGGTGGCCGCGGCCGTGGTGGCGGTTCACTTTCTTCACGTCCTAGGTTTGGAGG TTCTGGTGGACATGGGGATCGCCTTGGAGGTGAACGTGATCGATACATTGATGACCGTTATGACGGAGGACGTTATGGAG ATAGAGATCGTGTTGACAGCCGTGACTACAAATATGGTAGCCGTGATCGCTATGCTAGTGACAGGTACACACAGCTTATT GTTGTTACGAAATCAATACTCTGATGTGTTTTCCATACCTTCAAAACAGATTTAATGATGACTTTGGTTTAACGAAATAC ATTTTTCTCTGTTATTTCATTTAATTGATTAGGTTACTTGCCTCATTTATCATTTAGTAGTTGTACATGCTAATTCTTCA TGATTGTATTATAACAGTTACCTCTCCAGTCTCCTTTTGTTATCTCATGAGTCTATGGTTTTGTTATGATTTTTATTACT TCACTGAAACTGTGTAGGTATCCTACTAGTGGAGATCGATTTGCTAGTGATCGGTATGGTGGTGGCTCAGATCATTACTC ACAAAATGGTTATGGCAAGGAGAGAGGCTATGACCGGTATGGCGGTGCACGAGGAGGTGCTGATAGGTATGGAAGTGGAG TGGCAGCTCGAGATGAAGGAAGGGGCTACAGGGGTAGGCCTGGTCCATATGATCGCCCGAGCAGGGGTGGCCGTCCATCA TCATTTGACCGCTACTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0341900.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGAAAGAGATACAGGTCGTCCCCGAGGATTTGGGTTTATCACATTTGCAGACCGTAGAGGAATGGAGGATGCAAT CAAGGAAATGCATGGACGGGAAATTGGTGATCGCATCATCTCGGTCAATAAGGCACAGCCCAAGATGGGTGGTGATGATG CAGACCAAGGCTACAGAGGTGGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGAGCTGGAGATAGGGTTGGACAGGAT GACTGTTTCAAATGTGGGCGTCCAGGGCATTGGGCCCGAGATTGTCCTTTGGCAGGAGGTGGTGGTGGCCGCGGCCGTGG TGGCGGTTCACTTTCTTCACGTCCTAGGTTTGGAGGTTCTGGTGGACATGGGGATCGCCTTGGAGGTGAACGTGATCGAT ACATTGATGACCGTTATGACGGAGGACGTTATGGAGATAGAGATCGTGTTGACAGCCGTGACTACAAATATGGTAGCCGT GATCGCTATGCTAGTGACAGGTATCCTACTAGTGGAGATCGATTTGCTAGTGATCGGTATGGTGGTGGCTCAGATCATTA CTCACAAAATGGTTATGGCAAGGAGAGAGGCTATGACCGGTATGGCGGTGCACGAGGAGGTGCTGATAGGTATGGAAGTG GAGTGGCAGCTCGAGATGAAGGAAGGGGCTACAGGGGTAGGCCTGGTCCATATGATCGCCCGAGCAGGGGTGGCCGTCCA TCATCATTTGACCGCTACTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0341900.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDADQGYRGGGYSSGGRGSYGAGDRVGQD DCFKCGRPGHWARDCPLAGGGGGRGRGGGSLSSRPRFGGSGGHGDRLGGERDRYIDDRYDGGRYGDRDRVDSRDYKYGSR DRYASDRYPTSGDRFASDRYGGGSDHYSQNGYGKERGYDRYGGARGGADRYGSGVAARDEGRGYRGRPGPYDRPSRGGRP SSFDRY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.70.330
1 76 76 9.5E-14
IPR012677
ProSiteProfiles
PS50102
1 47 47 11.264
IPR000504
PANTHER
PTHR15241:SF190
2 110 109 3.0E-28 –
SUPERFAMILY
SSF54928
2 75 74 3.53E-17
IPR035979
PANTHER
PTHR15241
2 110 109 3.0E-28 –
Pfam
PF00076
5 40 36 7.8E-9
IPR000504
MobiDBLite
mobidb-lite
38 72 35 - –
SUPERFAMILY
SSF57756
66 101 36 2.88E-9
IPR036875
Gene3D
G3DSA:4.10.60.10
77 107 31 1.9E-8 –
SMART
SM00343
81 97 17 1.9E-5
IPR001878
Pfam
PF00098
82 96 15 1.7E-8
IPR001878
ProSiteProfiles
PS50158
82 96 15 11.383
IPR001878
MobiDBLite
mobidb-lite
94 246 153 - –
MobiDBLite
mobidb-lite
125 168 44 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0341900.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…