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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0342700 |
| Transcript ID | LotjaGi5g1v0342700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT5G04820.1 ovate family protein 13; Swiss-Prot: sp|Q9FMC8|OPF13_ARATH Transcription repressor OFP13; TrEMBL-Plants: tr|C6T3D2|C6T3D2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0342700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65979169..65980819) extracted from Lotus japonicus Gifu genome v1.2.
GACAATAATAAATGTAACATTATCTTTTGGTGCTCTGAAGAAAAAAATCTGCCATTGTTTTTTACAAACCTATGAGGCTG ACACTGCTGAAAAAGTGCTGTTACATTCAGTTGTTGATGGGAGCATTGAATAACATTGAATTTTACAAACCTACAAATTA AATTCACACATGAAAGCACCTACCAGACCCCCATTTCCCTTTGTCTTATTAATTTCCTTCCCCTCAGAGCCTCTGGCTTT AAATACACATTTCTGTTCCAATTTATTGCAAACACCAACCAAAGCTCAAAACAGAGGAGAAAGAAAACAGAACACAAACC TCACAACTCACATAGAAAAAACCACCCTCTGAAGAAAACTAAGATCCAATGGGGAAGAAAACATTGAAGCTGCTACCTTC TATTTTCAGACCCAAGTTTATACCCTCTTGTGGCCACTCAAAGACCCTCTCCTTCCGATGTGGGACAACAGGGAATGATG AAATCTTCAAAACAGTTAACTCTGTTTTCTTCGACCCTGTTTCAGAGAGCGTGGTAGAAACTCCAAAATCATGGTTCACA ACCTCCTCTGAATCCGCAAGCTTCTCAACAGAATCAGAGGATATCTTCTGCTACAATAATGATGAATCCCTTGACATGTT GGTTCGCGGCGCGAGGTCGGAGAGGCTGTTCTTCGAGCCCGGAGACACGAGCTCAATCCTGGAGAAGGCGAAGGCGAGAG GGTTTCCATTCAAGGAAAGCGTGGTGTTGGCCATGGAGTCAGATGATCCTTATGAAGATTTCAAGAGATCCATGGAGGAG ATGGTGGAGTCTCATGGTGTGAAGGATTGGGAGAATTTGGAGGAGCTTTTGAGTTGGTATTTGAGGGTGAATGGTAAGAA CAATCATGGTTTCATAGTTGGTGCTTTTGTGGATTTGCTTATTAGTATAGCAGCTTCTAACTCTAACTCTTGTTCTGATA ATTCAACTTCTTATTCTTCTGCTGTTTCTTCTTTTGCTTCTTCACCATTATTGAGTCTATCTGAAGCCCAGAATGAGATT ACTGAGCATGAGGCAGAAGATGATACTGTAACATCTAATTAGGATTAATTAGTAGTGATTTCAATATTTTTGTGTACATT TGTAGATTAAGGAGAAAATTTAGTGAGGCTTAAATTAATTATTATTCCTGATCAGCCTATAGAAGAAAAAGATTAATGTT GATCATGTTGTGTTGACCTTCTTGATATGATTATTGTTCAATTGCACTCTTAGACTACCCACAATGGTGTTGAATGTGGG TAGTTTAATGTTGAAAGTGGGGTTTAATGGTGTTGAAAGTGAGTGTTGAAAGTTGGAGGGAGGAGAGAGGTGTTGAAAAT TTTCAACACTTGTGAAACCTGCAGCATGGGACACGTGGCACGGCCTGGCTGGTGACCGCCAGGCGCGTGCCACACACGCG CGGACAAGGCGCGTTATGGGCAGGGCGTGGCAGCAGGCGGGTCCCAGGCGGACCGGTGGTGGGACGCGTGGCACGCGTCG GTTGGGCACCGTGCGTGCCACGCGTCAGAGGAGAGAGAGACGGTCTGATGAGTGACGCGTGTCACGCGTTGATTGGTCCG GGCGATTTTCTTTTATCCTAATCTTTCCAACTCAATTATTTCATTTAAAAA
CDS sequence (LotjaGi5g1v0342700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAAACATTGAAGCTGCTACCTTCTATTTTCAGACCCAAGTTTATACCCTCTTGTGGCCACTCAAAGACCCT CTCCTTCCGATGTGGGACAACAGGGAATGATGAAATCTTCAAAACAGTTAACTCTGTTTTCTTCGACCCTGTTTCAGAGA GCGTGGTAGAAACTCCAAAATCATGGTTCACAACCTCCTCTGAATCCGCAAGCTTCTCAACAGAATCAGAGGATATCTTC TGCTACAATAATGATGAATCCCTTGACATGTTGGTTCGCGGCGCGAGGTCGGAGAGGCTGTTCTTCGAGCCCGGAGACAC GAGCTCAATCCTGGAGAAGGCGAAGGCGAGAGGGTTTCCATTCAAGGAAAGCGTGGTGTTGGCCATGGAGTCAGATGATC CTTATGAAGATTTCAAGAGATCCATGGAGGAGATGGTGGAGTCTCATGGTGTGAAGGATTGGGAGAATTTGGAGGAGCTT TTGAGTTGGTATTTGAGGGTGAATGGTAAGAACAATCATGGTTTCATAGTTGGTGCTTTTGTGGATTTGCTTATTAGTAT AGCAGCTTCTAACTCTAACTCTTGTTCTGATAATTCAACTTCTTATTCTTCTGCTGTTTCTTCTTTTGCTTCTTCACCAT TATTGAGTCTATCTGAAGCCCAGAATGAGATTACTGAGCATGAGGCAGAAGATGATACTGTAACATCTAATTAG
Protein sequence (LotjaGi5g1v0342700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKTLKLLPSIFRPKFIPSCGHSKTLSFRCGTTGNDEIFKTVNSVFFDPVSESVVETPKSWFTTSSESASFSTESEDIF CYNNDESLDMLVRGARSERLFFEPGDTSSILEKAKARGFPFKESVVLAMESDDPYEDFKRSMEEMVESHGVKDWENLEEL LSWYLRVNGKNNHGFIVGAFVDLLISIAASNSNSCSDNSTSYSSAVSSFASSPLLSLSEAQNEITEHEAEDDTVTSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 207 | 204 | 1.0E-73 | – | |
| PANTHER | 4 | 207 | 204 | 1.0E-73 | ||
| TIGRFAM | 125 | 187 | 63 | 3.2E-27 | ||
| ProSiteProfiles | 127 | 186 | 60 | 18.263 | ||
| Pfam | 131 | 187 | 57 | 3.1E-26 | ||
| Coils | 217 | 237 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0342700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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