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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0342900 |
| Transcript ID | LotjaGi5g1v0342900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein; TAIR: AT3G58660.1 Ribosomal protein L1p/L10e family; Swiss-Prot: sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1; TrEMBL-Plants: tr|I1KU61|I1KU61_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0342900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66023398..66031358) extracted from Lotus japonicus Gifu genome v1.2.
TGAATAATGCATTCACCACGTACTGCATAATGGTCAACAAACAGATTCAAGAAGAAAAAAATTAAATATTATTTGTTTTC ATATATGAAATCAATATCATATCTTACTGTAACATACACAATCAGGGAGAGATTGCCTTACTCCCTTTTCCTTTACATTG ATACAGATAAATGTTATTTACTGAGAAGTAAATTAAAGTATGAAACAATAATAGGTAAGTATTAAACTAAACCCTAGTTT TTTTTTTGCCTATACCTTCTTCTTCTTCTTACTTGATCATTCGTTAAACCCTCACTGTCTCATCTTCTTCTTGCCGCCGC CGCAACGTCCTCCACCGGCTCCGCCCTCACCGTTAGGCCATGGCTTCCGAAACCGTGATAAGCCCTGAAACAGTATCAAA AGCCGTCGCCTCCCTCCTCAAATGGCGAAAATCCCAATCGGAGACGCAAAAACCCAACCTCTTAGGCCTAGACGAGGAGT TCGTGTACCTCGTCCTCACCCTGAAGAAGGTCCCTCAAAAGGGTCGCGTTAACCCTCACAAGCTTCCCCTCCCTCACTCT CTCCACTCCGATTTCTCCCAGCACTGCCTCATCCTCGACGACCGCGCCAACAAGGGCCGTGTCACCAAGGCGGACGCGCA GGCCAAGATCAAGGCTGAGTCCATCCCCATTGCCAAGGTCCTCAAGCTCTCCAAGCTCACTTCTGATTACCGCCCCTTTG AGGCCAAGCGGAAGCTCTGTGACTCCTATGATCTTTTCTTCACGGACAAGGCGGTGGTTCCGTTGCTGGCCCGCCTTCTC GGGAAGCAGTTTTTCAAGAAGCGTAAGGTGCCTGTGCCGCTGGATTTGACTAAGAAGAATTGGAAGGAGCAGGTGGAGAA GGCGTGCTCATCGGCCATGATGTTTTTGAGGACCGGGACGTGTAGTGTGGTGAGGGTTGCCAAGGTGAGCATGGAGAAGG ATGAGATTGTGGAGAATGTGGTTGCGGCTGTTCGTTCTGCGGTTGAGCTTGTTCCGAAGAAGTGGGGGAATGTGAGGTCG TTGCATGTTAAGATGTTGGATTCTCTGCCTTTGCCTATTTATCAGACTGTTCCTGATGTGAGGTTGAAGATTGATGGTGG TAAAGCTGAGGCGGAAGCGAAGGAGAAGGAGAGTGTGAAGGAGAAGAAGAAGGGTGAGGATGGGGATAAGGAAGTGGGGA AGAAGAATAAGAAGGGGAGGATTCATCAAGTTAAGTACATGGATGTGGATGCGGCCTTAGGGAGTAAGGATGAGGATGGT GACAATGCTGTCATAGGAGATGATGCTGAAAGGAGTGATGGAGGAGTGGAAAAATTGGAGAGTAAGAAGAGGGAGAAAGG AAGCAAAGTGGGGAAAGAGGCTGCTAAGTTGACTATTGTGAAAACATTGGGGGAACCTGAAACTCCTAAGGAAGGCGTCA AGCGGAGGAAAAATAAAGATGGGTCGTCTGCCAAAGTGACAAAGGAAGGTTTGGTCAAGAAGGGTGGAGATAAATTTCAT GCTAAAAAGGAGGGGTCCAGTGAGAAGAAGAAGAAGAAGTTGAAGGGAGCTGATGTGAAGGTTAAGGCGAAGAAAATTAA GAAGGCAGCAGCATGAGTTAACTGTTGATTGCAGGGAATTTTGCTTTTAGAATTTACTGCTTGATGTAGCTCTGTGCAAT ACTGTGAACTTTTGCTTTCTGAGTTCTCTGGCAGATTTTGTTTTTGAGCATTTTATTATGCCTTTGTTTTGTGTTTGTTT TGGTGATAATTTTAATTTACTATATTTGAGCTTTAGAATGGTTCTCTACACTCTACAGGTACAATCAAAATATTGTTTCT CATCTCAGATTGGTCTGAAGTTATTTAGATATTATATGCTTGTCAGAAATTGTTCAAGAAATTGTGAGGTCAAAGTTGGT GCTTTACTTTAAGAAACTTATCAATAAAATAATAGGAGATTTGCATAGCATGTTCAGTTTCAGTTTTCCATTTCTTGACT GCTAAGTTTAATGGAAAATCCATTCTGCTGTACGCACCAATTGTCAAACGTTTCAGGTATTGATTTTTCAGTGTCATAGG AGTAGAAAGGCTTATGGGATTGAAGTCAATTCTGGTTTCCAATTTGTAGTATCATTATTTAATTAGTATTAGGAGTAGAA AGGCTTACAGGTAGTATTTTAACCAGTAGTATTATGGTGACATAGCTATCTGAGGCTGGCTGGATTTGGGTCTATGTTTT AAGCAGTTCTATGGGGGATTGACATTGTCTGCTCATTTTTAGTTGTGATAGGCACACAATACTATGATGGGTGGGAGAAT GCAGTCAGATTGCCCTGTTACTGATATTCTGCTGATTACGGGTCGTGCCATTGCCAGCTGATCTTTGGTGGACAATTCTG GAAAATGTGTAATCTTGTGCCATGCACCTAGTAAGGGCAATCAAAAGTGAAGGGTCTTTTGGAGGTTCTATCTTCAGCTT CAGAGTATGATCAGCTTTCCATATGGCCGAGGAAGAGGTGGTTTATAGGTTAATTAATCACCGGAGATTTCCCTTTGGAA TGTAATGCTTTGCTTCAGGTTCATTTCTAGGAAATATGTAGGTGCTTCTTTCTGCAAGTTGTAGACCGTTTCAAGGTTTC TGCAAGTTGCCATTTAGTTGTCTATATGTTCATTTAGGTGATTTGTGAAACTTTTAAGTTATAACTTTTGGTTAGTTGCC TCCTTCAAAAAATATGCATTATCTGTTCCTGTTTTAAATTGGAATTTGTTTTAGGACATCTGTATTGCTGTTTGTGCAGT TTCAAAGTAGGAAATAAATGCTTATTAAAAGAGTTTATAATTAGATTTTGTTAGGCTATTGGTTATTTTTTAATTAGTTA CTACAACCCTATACAAGGATATCAGGTTTTTGGATCAAAATCAAAGCTAAAACTTGAACTCGTGTTTGCATATGTAATCT AGAATCTATCATTTTTTTCTTCCAGAAATTCAGTCGTAACCAATCATTATCATTTTGTTCTATTTATATATTTGTGTATG ATGTCTTATTATACCTTAAATTAGATTTTCACATCTAAGGCAAATGAAAGCCCAAATTTGTTATGATATGCAGATTTCCA TATGACTAGAACTATACAATTTTCAAAAAATATACAATGATTGATTAGTTTATCATGATAGAAGGTTGGTGTTCAGTTCA CATCTATTCTATCATACTCTGTATTAGAATACCAAGCCATGTCATAAATTCTTTTCATTTAAAACCATTCATGCTTGATT TATTAGCTTTGCTGATCTTCCGGTACGAGATTTATGCTTCTGCTATGAATTTAGGCTTCAATATATCATGTAGACAAGTG TTGTTTGAATGCATTTACATGGAAAATAATTACATGGGATGGATGACTAAATTGGTGGGTTTGAATTCTCAGACCACTAT AAATAGTTGACTCAATATTTTTATTGCTAGGTTGAATGAAAGTATAATTCTGTGTATTTTCCTGTCTTTGTGTAATTATT ACCATTGAAGGAACTTGGTCATTTTGAACTTCAGGGGCAGCTTCGTGCAAGAACTGAAATTGCTCCTGATCAGAGGGAAA AATTTCTGCAGAAGTTCCAGCAAGTGCAGCAACAAGGGCCTAGTACCCTTCTTAACATGCCTTCTCTTGTTGGAGGAAAT CATAAGCAGTTTTCAGCCCAGCAGCAAAATCCACTTCCACTTCTGCAGCAGGTAGTTTTTTTTGTATATCAAATTTGGTT TCTCATTCCTTATTGGATCTTTTACTTCTGTTGGAAGATTCAATATGGGCCAAAATCATCTCTGCATCATTCTCTTAGTT TCTTCAAAATAAATATTATATATTGTTCCCTACTGTCTGTTAAGGTCCCACATTAACTTGAGATATGGTTAAATAAGTCC TTATATAGGGTAGAACAATTCTCACCCTTGAGTTAGCTTTTAGGGTAGAGTTAGGTCTAACCCAATTTCTAAGATAGTAT CAAAGCCTATCCTAGATTTGTTGATTGGGCCTCTCATAAATGGGTCACCTGCAGATGTCCATTCCTGCAAACTTTACCCT CCAGATGTCTAACCCCAGACGCCAGGGGGGGGGGGGGGTGGGTGGTTAGGTCCCACATTGGCTAGAGATATGGCTGAAAT AGTCCTTATAAAGGACAGAACAATCCTCGCCCTAAGCTTTTAGGGTAGAGTTAGGTCTAATCCGATTTGTAAGAGTTCCA AACTATTAGTTTTTTATCATATTGGTTAGATTGTCTGGTTCTATTTTAGTGCCTTAAAAAAGAGATTTGCTCATGATTTT TCATTGGCTAGTATCTTTGAATTGTTTAGCTTAAATATGCAGTATTTCCTTCTAAAATTACTATAGACCACATGATTTTT CCTCTGGTCTTCACTATAGATTGCCAATTGATAGTTTTGCAAGTAAAATAGGATGTCAACTTTTAGTTTTCTTTGCTTGT ATTGGGAATTATGGGGAAAAAATTGAGGGAGAAAACCTCTTTATAACCAGATATTTTTGTCTGATTGTGGGTGAATTATG AAACTTATTTATAGTGATGGAATAATTGACCTTCTGTGCTTACTTTATCTGCAATGAAAATGACATGAAGAATTATCTGT GCTCAGAATGGAATGTCATGGATCATTCAAAATCACATAACATTTGATCATGTATTTTCAAGTATAGTCTAAATATTTCA TGACACATACTTGCATCATTAATTGTGCTTATATGTGAGGATGATGTGGGTATCAGTATGTATTGCATCCCTCTTCACAT GTTTAAAATTTTGTAAACGTATTTTTCTTGAAGTATTTAGTTCGTTCCGTTTTTTTGCATTCCATATATTTGCTTCTGTG TAAATTTACTTTATCTAATTAATAGCTGTTGAATGATAATAAACAGCTACTTCTATGCCTGATTTATTTCTACATCTGAA AAATATACTTTGCTTGATATGTACAGTTTAGTACTCAAGGATCTTCTGTTTCTTCTCAATCTGGTATGGTACTTGGAGTC CAGTCCCCGAGTCTCAGTAGTATTTCTCCTGCCTCAATACAGCAGCCACCCAATTCTGCTCATTCCCCATCCAGTCAACA GCCATTGATTCCGGGTGTTGCTAAAGATGCAGGTATGTTGTGTTACTTACATATATTTGATTTTCCTGTTTTAAGTTTGA CTACTTTCTTCCATTCCTTTCTCGTTTTAATGAGGGAGTGGTTAGAGTAGTACGATTTTATGTAAAATTTTGGAGGCACC GGTGAGAAGGGTTGATAACATGGTTCTCAGTCCTGTGAATAGGGGCTGAGGGAGGCCAAAAATGACATTGTTAGCGACCT CATGGTCAATGATATCCCAGAGCGCAATTGCGTTGGGTGATGCATATAGTTGGTCTTCAACATTGTTGTTATTGGTTCCA GATACTCAATACTTACATTATTGGGCTGCTATTTTTTTGCAATCAATGCTGAAGACTTTTAAATTCTTTTTCTGAAATTC CATTGTTATCCAAAATAGGGAAAGATTAGGAAAAAGAATGCCTCATAAATTTATAATAAGTGAAAACAAATAAAGATTCT GTATAAAAAATGTAGCTGTTTGTTCATTGAATATTAACTTTTAAAGATTCAGGAGTCTCTATTTTGTGAGCTTCCTTAAT GAATAAATAAATACCTAAAATGCGAGTATCAGATCACGAGATGTTAGTTTTCTACAAGGTCATTGAGGTCTAGTAAGTGA ATCAGGAATAACATATCTAAATCTACCCAGTTGCGCTGTAAATCAAGTTTAAAAGTTACTGTAGTAATGACTGAATTGTT CGACATATGGATACATCTCTTAAAAGAATACAGTGATCTTTTTGGATTAAGAAACAATCAAGATTGTTGCTATTATGAAA GAGGAGGTATCATCTAATTTTTGTATTATGTAGATGTTGGCAATTCTAAGGTTGAGGAACAGCAGCAACATCAGAATTAT GCTGATGAGTCAACAGCGGAATCTCCTTCTAGCAATGGGATTGGCAAGAATCTTGCAATTGAAGATGATTTGAAATCAGC ATATGCTGTAGATTCACCTGTATGCTTACTAACTTGTATTCTTTTTATGTTCTTTAAAGTTTAAAGATCTATCTTACTCC AATTCAATAGAAGTGTATATCCTGTCATTCATTGATTTATATTTTGAATTTCGTACTTTGCTGTGCATGCAATGCATCAT ATACTTTGTTAATAATTCCTGTATCACAAGTTGGGAATTTGGTACGTTAACCACCCTAGTGTTTTGACAAGGTAGTCAAA TTAATGGACTAAACTGAATAGCACTTTTAATCCTTGCTAATCTTTTTGAGAAGGTAATATGATATAAATTTTGCAAACGT ATTTAAAGGAAACATAGACATCATATGCATGAGATTAGGAGGAGATTTTCTCTTCTTTTGCTCCCTGTTTTGTTGTTAGA GGTGACCAATTTTATTATACATAGTATTATTTGATTAGTAAATTAGATGACCACCGCGATAGTAGTAAATCTGATGAGTG AAAATTTATAGGATTTTCCTGATTTGAAGATAGCAAAATACGCACTTGTAATTGTGTGTGTGCACACATGTCTGCATCTG CCCGTGTTGTGATTTTGAGGATGAACTGGGTTAGTTCTCTGTCGTTTTTGCTGCAGGCAGGAGTATCTGCCTCTCTTCCA GAATCTGCTCAAACTTCCAGAGATATAGATTTGTCTCCCGGACAACCATTACAATCCAATCAACCTACTGGTAACCTTGG TGTCATTGGAAGAAGAAATGGTGCTGAACTTGGAGCCATTGGTGATAGTTTTAGTGGATCGAGTGTCAATTCTGGTGGAG TGCGTGATCAGCTATATAATTTACAAATGCTCGAGGCAGCACATCACAAAATTCCTCTAGCTAAAGACTCAGAACATCCT AGGACTTATACTCCTGTATGCATTTCCAGTTAATTCATCCTCAAGTTCATCGAATAGTATATCATATGGGCTTACATTGG TTTTTCTTTTCCTATATTTTGTGTTTATGCAGAGGCACCCAACAATTACACCTTCTAGCTATCCTCAAATACAGGCACCT ATAGTTAATAATCCTGCCTTTTGGGAGAAAGTGGGACAGGAACCATTCGGCACTGACACCTTGTTCTTCGCATTTTATTA TCAACAGGTATCTGAACTTTCTGTCTGATTAATATTATTGTGTTGATAAGTCTTGTAAATTGAATATCCTTTTTTTTCCC GGCAGAACACATACCAACAATATTTGGCTGCAAGGGAGCTAAAGAAGCAGTCTTGGAGATACCACCGAAAGTATCATACA TGGTTTCAGCGACATGAAGAACCCAAAGTTGCTACCGATGAATTTGAGGAGGGAACATATGTCTACTTTGATTTTCATAT TGCAAATGATGACCTGCAACATGGATGGTATGTTGAGTATACATTTATGATTTATCTCTAATGCCCCAAACTGTTTCTGT TGACGTCCGTCGACAGAAATAGTTAGGGGCATCGTTATTTGTGGTCATAGCGTATATATGAAAAATCCCACTTAAATTTT GATGTTCTGTTTGCTCTTTTATTTCTTCTGACTTCTGTACCTTGATGTGGTTATTCAGGTGTCAAAGAATCAAGACTGGA TTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTGTTGTATAGATGATAACATCTATAGTAGCAATGTGTCTTCTTTG TTATTATGCTCCGTTGTGCTTGTGCACATTTAGTTTCAATGAATATTTTCCTATTAGACTGATAAGATAATTATTTTATC TTCCTATTAAATGTAATATACCAAACTTAAAAGATGAAAAAAGTCATTAATTTAATTTTGATTGTTTAGTACTTATCAGT TTTAGATAGATGTTACGCATTTAATTTATTTTTTGTTGAGT
CDS sequence (LotjaGi5g1v0342900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCGAAACCGTGATAAGCCCTGAAACAGTATCAAAAGCCGTCGCCTCCCTCCTCAAATGGCGAAAATCCCAATC GGAGACGCAAAAACCCAACCTCTTAGGCCTAGACGAGGAGTTCGTGTACCTCGTCCTCACCCTGAAGAAGGTCCCTCAAA AGGGTCGCGTTAACCCTCACAAGCTTCCCCTCCCTCACTCTCTCCACTCCGATTTCTCCCAGCACTGCCTCATCCTCGAC GACCGCGCCAACAAGGGCCGTGTCACCAAGGCGGACGCGCAGGCCAAGATCAAGGCTGAGTCCATCCCCATTGCCAAGGT CCTCAAGCTCTCCAAGCTCACTTCTGATTACCGCCCCTTTGAGGCCAAGCGGAAGCTCTGTGACTCCTATGATCTTTTCT TCACGGACAAGGCGGTGGTTCCGTTGCTGGCCCGCCTTCTCGGGAAGCAGTTTTTCAAGAAGCGTAAGGTGCCTGTGCCG CTGGATTTGACTAAGAAGAATTGGAAGGAGCAGGTGGAGAAGGCGTGCTCATCGGCCATGATGTTTTTGAGGACCGGGAC GTGTAGTGTGGTGAGGGTTGCCAAGGTGAGCATGGAGAAGGATGAGATTGTGGAGAATGTGGTTGCGGCTGTTCGTTCTG CGGTTGAGCTTGTTCCGAAGAAGTGGGGGAATGTGAGGTCGTTGCATGTTAAGATGTTGGATTCTCTGCCTTTGCCTATT TATCAGACTGTTCCTGATGTGAGGTTGAAGATTGATGGTGGTAAAGCTGAGGCGGAAGCGAAGGAGAAGGAGAGTGTGAA GGAGAAGAAGAAGGGTGAGGATGGGGATAAGGAAGTGGGGAAGAAGAATAAGAAGGGGAGGATTCATCAAGTTAAGTACA TGGATGTGGATGCGGCCTTAGGGAGTAAGGATGAGGATGGTGACAATGCTGTCATAGGAGATGATGCTGAAAGGAGTGAT GGAGGAGTGGAAAAATTGGAGAGTAAGAAGAGGGAGAAAGGAAGCAAAGTGGGGAAAGAGGCTGCTAAGTTGACTATTGT GAAAACATTGGGGGAACCTGAAACTCCTAAGGAAGGCGTCAAGCGGAGGAAAAATAAAGATGGGTCGTCTGCCAAAGTGA CAAAGGAAGGTTTGGTCAAGAAGGGTGGAGATAAATTTCATGCTAAAAAGGAGGGGTCCAGTGAGAAGAAGAAGAAGAAG TTGAAGGGAGCTGATGTGAAGGTTAAGGCGAAGAAAATTAAGAAGGCAGCAGCATGA
Protein sequence (LotjaGi5g1v0342900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASETVISPETVSKAVASLLKWRKSQSETQKPNLLGLDEEFVYLVLTLKKVPQKGRVNPHKLPLPHSLHSDFSQHCLILD DRANKGRVTKADAQAKIKAESIPIAKVLKLSKLTSDYRPFEAKRKLCDSYDLFFTDKAVVPLLARLLGKQFFKKRKVPVP LDLTKKNWKEQVEKACSSAMMFLRTGTCSVVRVAKVSMEKDEIVENVVAAVRSAVELVPKKWGNVRSLHVKMLDSLPLPI YQTVPDVRLKIDGGKAEAEAKEKESVKEKKKGEDGDKEVGKKNKKGRIHQVKYMDVDAALGSKDEDGDNAVIGDDAERSD GGVEKLESKKREKGSKVGKEAAKLTIVKTLGEPETPKEGVKRRKNKDGSSAKVTKEGLVKKGGDKFHAKKEGSSEKKKKK LKGADVKVKAKKIKKAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 285 | 279 | 3.5E-92 | – | |
| PANTHER | 7 | 285 | 279 | 3.5E-92 | – | |
| CDD | 12 | 240 | 229 | 8.54739E-37 | ||
| SUPERFAMILY | 14 | 241 | 228 | 2.35E-40 | ||
| Pfam | 19 | 235 | 217 | 5.5E-56 | ||
| Gene3D | 86 | 178 | 93 | 1.7E-19 | ||
| MobiDBLite | 255 | 418 | 164 | - | – | |
| MobiDBLite | 255 | 283 | 29 | - | – | |
| MobiDBLite | 298 | 339 | 42 | - | – | |
| MobiDBLite | 354 | 401 | 48 | - | – | |
| MobiDBLite | 402 | 418 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0342900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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