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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345000 |
| Transcript ID | LotjaGi5g1v0345000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 45B; TAIR: AT1G55240.1 proteinase inhibitor I4, serpin (DUF716); Swiss-Prot: sp|Q3T130|TM45B_BOVIN Transmembrane protein 45B; TrEMBL-Plants: tr|I1LF16|I1LF16_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0345000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66164884..66166425) extracted from Lotus japonicus Gifu genome v1.2.
TTCTCATCAGCCATCTTTATGAACAAACTTCATCTGCATTGCATAAGATCTCTATAAAGGATACTCATTTAGTCTTATAA GTATAGGGACTCTGAAAATAAAGTCACTACTCTGAAAATAAAGTCACTACCCCATTCCTCATTTTCTTCTGTTAATTATT TACTTGGTGGGAATTTACCTTTGGTGGTTAAAGTAACAAGCCAAACACCAACCTAGTAGGTTTCTCTCTTGTGTTATTTG ATTTGATTTGACTAAGAGGCACTATGCTTGAGGGGCATGTTTTTTTGGGGTTTGGCTTCTTTTTGATTGGTTTATGGCAC CTCTTCAACCACATCAAGCTCCATGCTCTTTACTCCAATTCCTACACGTCAACCCTTTGGTTTCCCTTCAGAATAAGCAG ACACCTCGAGCTCTATTTCATCATGGCAAGCTGCTCACTCTTCATAGCCATGGAGCTCTTCATATCTCCCCTTCACCACC ATCCATTGGACCCTGATGGAACCATCCCCTCTGACCACCTCCACAACTTTGAACACTCCTCAATGGCCCTGGGTTTCTTG GTCTATGCCACCTTTGCCATGGTTCTTGACAGAAAATGCATCAAAGCTCAACATGAGCTAACCCAATTGCTTGGAGCCTT GGCTTTTGTGCAAGAGTTTCTTCTCATCCACCTTCATTCTAGAGATCACACAGGTAGGGACGGATAGAGGTTCTAGCAAA ATGGGGCAGTGGCCCCAGAGAAAAAGTTCCTTAATATAATAGTACTCAATTGTTATATTTGCTATTCCTGAAATATTTTA TATTGAATCCGTCATGTTTTTTCCCGGTAGAGAAACTCTGATAAGTGTTTTTGTGTTTGTATCCAAACAAACACATCATC TCCTTTGATTAGTCGTTATTGATTTTACTTAATATGTTAACTTTCCACCTCCTTTATCAATTTTTTGATTTCGTCCTGAC TGACATACACAGGAGTAGAAGGCCAATACCACTTGTTGCTGCAGCTTCTGATTCTTGTTTCTTTAGTCACAACTCTAATG GGAATTGGGTTGCCAAAGAGCTTCATGGTTGGCTTTGTGAGATCTGTTTGCATAGTCTTCCAAGGTGTGTGGCTCATGGT CATAGGGTTAATGCTCACCACACCTGGATTTGTAGCCAAAGGGTGCTCCATTCACTTTAAGGAGGATCCATATCTGGTAA AATGCAGTGATGATAAGGCCCTTCATAGAGCTGTCTCATTGGTGAACCTTCAATTCAGCTGGTTGTTGATAGGAGTCACT ATCTTTGCTATGTCTTTCTACTTAATTGGAGTCACTACAGGTAGAGGCTATGGTGAAAAGGTGGAGTATTTTTCACTGAG GAAAGAGGGACATTGCAGTGAAGAAGATAGCTTAAAGAATGACCTTGAATCTCAATCCCAAAAGACAAGCATGCAAGAGC AAATTTAAAGCACTTTGTGAATTATATGCTCCATTAGTGGACCAAAAAAATTGCTACAATGTATTAATTAAATTCAACTT GCAGAAAAGAGAATTGTATCTA
CDS sequence (LotjaGi5g1v0345000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGAGGGGCATGTTTTTTTGGGGTTTGGCTTCTTTTTGATTGGTTTATGGCACCTCTTCAACCACATCAAGCTCCA TGCTCTTTACTCCAATTCCTACACGTCAACCCTTTGGTTTCCCTTCAGAATAAGCAGACACCTCGAGCTCTATTTCATCA TGGCAAGCTGCTCACTCTTCATAGCCATGGAGCTCTTCATATCTCCCCTTCACCACCATCCATTGGACCCTGATGGAACC ATCCCCTCTGACCACCTCCACAACTTTGAACACTCCTCAATGGCCCTGGGTTTCTTGGTCTATGCCACCTTTGCCATGGT TCTTGACAGAAAATGCATCAAAGCTCAACATGAGCTAACCCAATTGCTTGGAGCCTTGGCTTTTGTGCAAGAGTTTCTTC TCATCCACCTTCATTCTAGAGATCACACAGGAGTAGAAGGCCAATACCACTTGTTGCTGCAGCTTCTGATTCTTGTTTCT TTAGTCACAACTCTAATGGGAATTGGGTTGCCAAAGAGCTTCATGGTTGGCTTTGTGAGATCTGTTTGCATAGTCTTCCA AGGTGTGTGGCTCATGGTCATAGGGTTAATGCTCACCACACCTGGATTTGTAGCCAAAGGGTGCTCCATTCACTTTAAGG AGGATCCATATCTGGTAAAATGCAGTGATGATAAGGCCCTTCATAGAGCTGTCTCATTGGTGAACCTTCAATTCAGCTGG TTGTTGATAGGAGTCACTATCTTTGCTATGTCTTTCTACTTAATTGGAGTCACTACAGGTAGAGGCTATGGTGAAAAGGT GGAGTATTTTTCACTGAGGAAAGAGGGACATTGCAGTGAAGAAGATAGCTTAAAGAATGACCTTGAATCTCAATCCCAAA AGACAAGCATGCAAGAGCAAATTTAA
Protein sequence (LotjaGi5g1v0345000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEGHVFLGFGFFLIGLWHLFNHIKLHALYSNSYTSTLWFPFRISRHLELYFIMASCSLFIAMELFISPLHHHPLDPDGT IPSDHLHNFEHSSMALGFLVYATFAMVLDRKCIKAQHELTQLLGALAFVQEFLLIHLHSRDHTGVEGQYHLLLQLLILVS LVTTLMGIGLPKSFMVGFVRSVCIVFQGVWLMVIGLMLTTPGFVAKGCSIHFKEDPYLVKCSDDKALHRAVSLVNLQFSW LLIGVTIFAMSFYLIGVTTGRGYGEKVEYFSLRKEGHCSEEDSLKNDLESQSQKTSMQEQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 298 | 298 | 4.8E-155 | – | |
| PANTHER | 1 | 298 | 298 | 4.8E-155 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 30 | 25 | - | – | |
| Phobius | 31 | 49 | 19 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 50 | 71 | 22 | - | – | |
| Phobius | 72 | 90 | 19 | - | – | |
| TMHMM | 89 | 108 | 20 | - | – | |
| Phobius | 91 | 108 | 18 | - | – | |
| Phobius | 109 | 119 | 11 | - | – | |
| Pfam | 118 | 254 | 137 | 2.0E-46 | ||
| Phobius | 120 | 139 | 20 | - | – | |
| TMHMM | 121 | 138 | 18 | - | – | |
| Phobius | 140 | 150 | 11 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 151 | 170 | 20 | - | – | |
| Phobius | 171 | 181 | 11 | - | – | |
| Phobius | 182 | 204 | 23 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 205 | 237 | 33 | - | – | |
| Phobius | 238 | 256 | 19 | - | – | |
| TMHMM | 238 | 257 | 20 | - | – | |
| Phobius | 257 | 301 | 45 | - | – | |
| MobiDBLite | 281 | 301 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0345000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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