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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0349600 |
Transcript ID | LotjaGi5g1v0349600.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Translation initiation factor IF-3; TAIR: AT1G34360.1 translation initiation factor 3 (IF-3) family protein; Swiss-Prot: sp|Q9K867|IF3_BACHD Translation initiation factor IF-3; TrEMBL-Plants: tr|A0A1J7HIQ2|A0A1J7HIQ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66524154..66530782) extracted from Lotus japonicus Gifu genome v1.2.
CCCAATCACACAACTCTATACCAAAAAAAAATTTCACAACTCAACTATGGCACTGTCACGAACATAACAAAACACTTTGA GGTTGTTGTTCGTTTTCGTTTTCTCCCAAACACACACAAACCTCAGTTTGATTCGTTGAGGTAATGGCGTTTCTGCACCA AATCGGAAAACGTAAGCTGAAAACCGTGTGCATCCAATTGCGCAGATGCTACATTCGTCTTCCGCATGATTCTTCATTGA ATTCCACCCCCAAACCTTACCCTTCGGAGATTCCACGTCCGTGCTCGGTTTTTCATGGTAGACCCTCAAGTGTTTATAAT AGCGTCAGGTTTTTCGCTGCTCCCATTCAGGTAAATTTTTTCAAACTTTCTGTTGTTGATCAGACTTGAGGATATCAAGG TTGTGATTGGAAATGGGTTGCTTAGTGATTTGTGATTTGAGACTGGTTTTGGATTAGTATATTACTTTTATCATCTAAAT GGAGGGCATTTTTGTTGCTTATAATCTGTTTTCTTAGGTGTATTTGGATAAACAACTTAATTAGACACTTATGTCAATAA GCACTTATCACTTAAGCATTTATTATTTGCGAAACTTATCGAAATAAGCTCAAACAAACATATATGTAAGTGTTCAATCA CGGGCTAATTTGAGAAATTTATTAAAATAAGCTCTTTTAGCTCAAAAGAGCTTATAAGCTTGATTGAACACTTTTTTGTG TGTGCATGTTGTAAGATAAACTCAAATAAACTCCTTCAGACATACACTCGTATTGTGTTGTTATTGCTCATTGTATTAGG CATTGGTGGTTAAAATTGGTACTCCTTGAATTTGATGATGTTTTCTGGGTTTTCAGTTTCAACCAAAGCCCAAGAAGGAG GAGGACAATGGGCCACGGCTGAATGACGAAATCAGAGCTCAATTTATCAGACTTGTGTCAGATGATGGTAAACCCACGAC CCACATTTTAAATCGACGCTGGTTTGGTTGTTTATTTTTGTAGCTTTGTTTATGTTATTAACTTATTATCCTGATTGGTG GCATTGCATGTGTCTGTTAAATCTGACATCTTAGTTTTATTCATTTTTAAACTCTCGTCGTATGAGCATAAAGCGAGACA CTCTATTATTAGAAAAATGCTAGGCCATACAATTTCCTAGCTATTTTTTGGCAATCGTACCACATTTGCTCATCATATAT TCATATTAGATAATTGTTTTCCCCTGCTTGATATCAAACCCTTACAGTTTACTACTAAAATCAACTTCAATATAGCCTGC AGTTGCTTGCTTAGCGCTAGGAATTTAAAGTTACATGAAGAAATCAGAAACATACACATAATAAAGGATATATGTCCTTG AAACTTTGGAGGGTGAATATGTACTGCTTAGAGCTATAGAAATTACTACACGGACTTGGAAAATCAGCTGTGTGCCATTT ACTTTATCTATGCACAGAAAAGTTTTGGTTGAGCTTTGGATGTCCCTCTAAATATGAGTCCATGCAGGGCATACAGTAGT GTCAAGGTTTCAAGCATTGGAACGTGCCAGGAATCTTAAACTTGATCTAGTTGAGGTAAATGATTTTTTTAATTCTTTCC CCATGTTAACTGTGTATTTTTTAAGAGATACATGCAAAATATAGATGCTGAGTTAAAGTAGGTTATGTCGGAAATTCATC ATTTACTGAAGGAATTGTTCTTTTCTTTTTCTTTTTCTGCATTCCTGTCCTGGTGTTTTTTTTTTCCTTCATTTTTTTAT GTCATTCCGTTATTATGGGGATGGCCTTAGCCCTTAAATCCTTCTAACCGTAAGTTGGGGTAATGAGTCGAGGGTGTATG TTTAACATTACATTGTTGTGGGTTTCAAAGAAAAAAATAGTGATAATTTTAATCACCAAATACAACATATCCCTAATATT TGTGATATTTTATGAACGTTGGTCGACTATATACCCATGCATCATATCTGTCAAACTCTTAAGCATTAAAATTTGCTTCC CCATATATCTTGTGACATTTATTATGAGAGTACTTGGTCATGTTACAGGTTGATAAAAATGCTAAGCCACCAGTTTGTAA GATTATGGACTTCCACAAGGAAGCTTACAAAAAACAAGAAAAGGATAAGGAGCGTGCTAAAAGCAAGGTGGAGTATGCTT TTGATTAATGCAATTGTTTCCAAGTTGCTTGTGAAGTTTCTTTAATTGCTTTTGGTTGAAATCAGTGATAAGAGTTTTTC TCCTGGTCATTTCAATTTAGTAATAACATATGAATCTTTATTAGCAAACGACTGATAAAAGTACATGTTTCATATTGCAT GCTAATTGCTAAAAATGATGGCAACATAATCGGCAATGAGTATAATGAAGTAATGTGATATATAAGTTGGGATTTCTTTT CATGTTTTGCATGGACTTATTTTCCACTTTTTTTCAAGTCAAGATTGACTTGCTAAGAATGGGTTTGACTGTGGACAATT GGATGATTCCTGTGGAGCTACTATGTGCCTGCCAACTTGGAAAGAATTTGATTATGTTTGGCGGGTCTTGTGCCCTTCAT AATAATATGCCTGGCTAAAGAATCAGATTTATGTTCCCATGTCTTGCCGCACACTGACCAGGCTCATAATGTCTAACTCA AATTTCAACCATTGAGCGACTGATTTGAAGGAAAGAAAAAACCAGGAAAAAGCTCTGGCACTGAGCAAAATGAATATGCT GAGTGAAATCCTTGCTCTATTCTCATAATTCCAACGAATTATCCTGTTGCAGCTAGCTTTCTTATAGCAAGGATAGTTGA AATATGAAACTCTAGGAACTAGGATGTAAAGCCTTGCTTTTCAAGTTCTGAAACGGAAACAGAACCCTATATTTAGTGTG CTTGAAAAGTTCTTGATCTCCCATAATTCTCATCCCCCACGTTCTTTGACTAATATGGTAAAAAAACATGTTTCATTTTT CAGTGGGTGCTATGCATTTTAATTACTCAGTTATACACTTATACTGCTGTAATTACATGTTTAGGGAGTTGTCAAGGACA AATATTTAATCTTTCGATGTAGTATAGTTTTCTTAATCATTTTTTCTGAAAAATGCAGTCTGAGGTGACATTGCGAAAGG GGGAATGTAAGGAAGTGCGAATTTCTGAAAAAACTGTAAGTTTTCTTGCTTTGAAATCTTATCTTATAAATATTTTAGCA AGTATATTTATTTCATCTCAGAATTGTGAATAGTCTATTGTAAATTAAGTCCAGTAGCACTTAGTTTTCACTAGGTCTCC AATTGTGGTCTTGTTGATGGGTTCTAAAAGCAATACTTAGCAGTTTTAGCTAGGCCTATATATGTCTGGGGACCTACGTT GTGGTATTAGTATACATGCAAATATTCAGGTTCTTTACTTGTTGCATTCTATAATCTAGTCCAAGGCTTTTGGTGCCTGG ACTAAAAGAGGGAGACACTTGGTGCCATTTGAATCAAACAAGTGATCTGGTGAAGGAGTTAACCATCAAGATACAATTTG TAGAGAGAAATGTTGAAACTGCAAGATGTTATGTCTTTGGTTTTAACTTAAAAGGTTTCTGGTATATGTACTTTGAGGGG CTGTCATATTTAATTTCATGAACCTGGAAAATGGGTTTGGATGTATTGAAATTTCTGTTAATGTTTTCAGGAATCAAAAG ATATTAAGATGAAAGCAGATATGGTTAAAAAGTTAATGGAGAAGGGTTATAGGGTGAAGGTACTCTCTTAATCTCTTTTC ATATATGGCATATTCCCCCTGTCTGATTTTGATTCATCTTTTCCTTCTGTACTGTCTCCATGGTGTTTGGGGACCAATCT CTTAAAGAGTGTGTTCATTTCTAGGCATCTAGATAATTCCAAACTCGCAAATTTAACATTCTCATGCATGGTACAAAATT CAAACTTTGTAAAAGTATTCCTAGTTATTATTGATTACTAGGAAAAGTAAATGCCCATGTTTCCCTTGCCTTTATTCCTA TAGTGAGAGGTAAGTCTTTTCCTTTCCCATAACTTTGCACCCGCATTCCATTCTGTTTCCCTTTTTTTTTTTGGACGAAA TAATTTGAAAAAATATTAAATGGTAACCAAACATATTTATGAATTTACTGGGAGAAACAACCTTTGTTACAGTGTTTCTG GGAATATAATTTCAAGGAATACAATGGTACGCCTTGAAACAAACACCCCCTATGTCATTGTGTTTCTTTATGTTAGAAAC TGTGTTTGCTTTCCATGCAAAAGGTTGAGGGTGCATCTAGTTTTGATAAATGATAAGAGGAGAAGAGAATGAGATAATCT TTTACGATATATATCTTTGAACAACATATGTCGCATTCATCCGTTGCCTCATGCAAAGCTTTGATTTGATGTATTGTTAG TTAACTCAGTCACGATTGCCTTTTCATGTTTCTAAATAGTGCAAGGCAACATCAAGCAATGAAAATGCAGACTTGGCAGG ATCATCTTTGTCTCGTCTTTTGGCTCAGGTACAATGGCTCCTGCTTTATTCTGTGTTACCTGGCTAATTTTTACCAGTAT TTTTCTTTATTATCCTTCGGTTCTATATCGTAAAAGCTCTTTGCAGATAGAAGATGTCTGTGTTGTGGAGAGTGGACCAC ATATAGCAAGAAAAGAAGTCTATATGGTAGTCAGACATGTTAAATATGGACCATCCAAGAAAGGTGCGAAAAAACCTCAA GATGCGGCACAGATGGCTCTGAAGGCTGAGGAGGGAAGTGCCAATTCTAGTGATTCTATTGAAGATAAGAATCACAATTC TGCTGAATCTGGGTTTAAGTTTGAGGAGGTGATTTCTGATGGTGACAATCATATTTTCTTCTCGGATGCGAGTACCAAAG ACAAAGATTCAGGATCTCCTGCTGTGTTAGAAAATAGGTATAAAAGAGCTGATCATCCGGGCGAAAACAAGTCTCGTTCC AACACGCCCAACACGCAAGTGCCTCCTGCTGTGGCCGAGAACAGGTACCAAAGAACTGATCCTAGAAACCGGTTCCAACA AACAATACCACCAAATACTACAGGTCCAGGAGTAAGAGATGGAGGCAGATGGACACCCTCGAATCCGAATGAGCCGAGAA ACCGATACCAACAAACAGCATCAAATAACACAGGTCCAGGAGTAAGAGATGGAGTCAGATTGTCACCCTCGAATCCGAAT GAGCCGAGAAACCGATACCAACAAACAGCATCAAATAACACAGGTCCAGGCGTAAGGGATGGAGTCAGATCAACACCCTC AAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCACCAAATAACACAGGTCCAGGAGTAAGAGATGGAGCCAGGT GGACACCCTCGAATCCGAATCAGATGAGGCATGCCCAGGTCGATAGCAATGTTCATCCCAGAATTGAAAATACCAACCAA GGTATTAACATAACTCCTGGATCAAGAAACTCAATTCCTTCACCTGACACTGTCACCAGGAACCCTGGAGCTCCCACTAC CCCACGTACTGGTTTTGGCATTTTCAGTGCTTCTAAAGGTCCTGAGGCACAAGGTAGTAACAGTAGGGATGCCTAGGCGC AAAGAAGGGAACTCTCAGGGCTGTACTAGTCTCAGTGAGTTCGAGAAACAACACATATAGCTTGTTTGGATCAACTTATT TTTCATCAGAATCAATTCTGGCAACCAGTAACTATTCACAAAAGCTTCTTTCCAGAACTGATTCTGACTTTAGAATCAAC TATTCAAATGTGGAAGAATTTCCAAACTCGCACTTAGTGTCTTTGGACTTCCGTTGCAATCTATTGTGAGATATGAATTT CCCTTGAAAGTGCTTTTAAGCATTGGTGGCGGAACTCCAAACAGATTAGATAAAGGGTGTTGGCAACTCTTGCATAGAAT AGATAGGCTTAACTAATATATTCATGATAATGACAAACATGGTCTCATGACAGACTATTTTGTTTAGAAACATGGATGGA TGAAACTATGAGTAACACATTCACAGGCTTGCAGCTGTATTTATCTTGGCTGACGCCTCAGTTTTTTGAGGTGTTTTGCA TCATTTAATAATGTTACTTTTGGAATCGAAACACAATTTTGATTTTGTGGAGAAGGGGTTTGTTAACTACCCCAGGGGAA ATTTTGATGTATTATGTGATTCTATTATTGTTTAATGTGCACTGAGGCAGCAGATATGATTACTACTTGTGCATGCCACA ACCTTTAGGGCTGAGGGTAGGTCGAGTGCGGTCTCAGGTAAAGATGGAAAATTCTCAAACCGTAGCAAATTGTTGTCATG AATTTACAAATCGAATGCCGTTGGGTTTGTCAGATGTGATGTGCTCAGTTGGGTTGGGCAGGTGACTCAGGTGGGATTCC TCAGATTGTGTATGTTAGGCTGGGGAAAATGGTTCTTGTGAGAGTTTTATGGAGGAGAAAAAAAGACTAAAATAACTGGT TTTGTCCACCTTCATATCCTCAACATTGAAGGGGAGTCCAAAATGTATGAGGATGAGTTTTGGCTACCTAAATCCCTCCC TCATTCCACTCCAACCATGCAATTTTTAGAATCCCTCACCTCCTTCAAGCCAAATATAACATAAAAGAG
CDS sequence (LotjaGi5g1v0349600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTCTGCACCAAATCGGAAAACGTAAGCTGAAAACCGTGTGCATCCAATTGCGCAGATGCTACATTCGTCTTCC GCATGATTCTTCATTGAATTCCACCCCCAAACCTTACCCTTCGGAGATTCCACGTCCGTGCTCGGTTTTTCATGGTAGAC CCTCAAGTGTTTATAATAGCGTCAGGTTTTTCGCTGCTCCCATTCAGTTTCAACCAAAGCCCAAGAAGGAGGAGGACAAT GGGCCACGGCTGAATGACGAAATCAGAGCTCAATTTATCAGACTTGTGTCAGATGATGGGCATACAGTAGTGTCAAGGTT TCAAGCATTGGAACGTGCCAGGAATCTTAAACTTGATCTAGTTGAGGTTGATAAAAATGCTAAGCCACCAGTTTGTAAGA TTATGGACTTCCACAAGGAAGCTTACAAAAAACAAGAAAAGGATAAGGAGCGTGCTAAAAGCAAGTCTGAGGTGACATTG CGAAAGGGGGAATGTAAGGAAGTGCGAATTTCTGAAAAAACTGAATCAAAAGATATTAAGATGAAAGCAGATATGGTTAA AAAGTTAATGGAGAAGGGTTATAGGGTGAAGTGCAAGGCAACATCAAGCAATGAAAATGCAGACTTGGCAGGATCATCTT TGTCTCGTCTTTTGGCTCAGATAGAAGATGTCTGTGTTGTGGAGAGTGGACCACATATAGCAAGAAAAGAAGTCTATATG GTAGTCAGACATGTTAAATATGGACCATCCAAGAAAGGTGCGAAAAAACCTCAAGATGCGGCACAGATGGCTCTGAAGGC TGAGGAGGGAAGTGCCAATTCTAGTGATTCTATTGAAGATAAGAATCACAATTCTGCTGAATCTGGGTTTAAGTTTGAGG AGGTGATTTCTGATGGTGACAATCATATTTTCTTCTCGGATGCGAGTACCAAAGACAAAGATTCAGGATCTCCTGCTGTG TTAGAAAATAGGTATAAAAGAGCTGATCATCCGGGCGAAAACAAGTCTCGTTCCAACACGCCCAACACGCAAGTGCCTCC TGCTGTGGCCGAGAACAGGTACCAAAGAACTGATCCTAGAAACCGGTTCCAACAAACAATACCACCAAATACTACAGGTC CAGGAGTAAGAGATGGAGGCAGATGGACACCCTCGAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCATCAAAT AACACAGGTCCAGGCGTAAGGGATGGAGTCAGATCAACACCCTCAAATCCGAATGAGCCGAGAAACCGATACCAACAAAC AGCACCAAATAACACAGGTCCAGGAGTAAGAGATGGAGCCAGGTGGACACCCTCGAATCCGAATCAGATGAGGCATGCCC AGGTCGATAGCAATGTTCATCCCAGAATTGAAAATACCAACCAAGGTATTAACATAACTCCTGGATCAAGAAACTCAATT CCTTCACCTGACACTGTCACCAGGAACCCTGGAGCTCCCACTACCCCACGTACTGGTTTTGGCATTTTCAGTGCTTCTAA AGGTCCTGAGGCACAAGGTAGTAACAGTAGGGATGCCTAG
Protein sequence (LotjaGi5g1v0349600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLHQIGKRKLKTVCIQLRRCYIRLPHDSSLNSTPKPYPSEIPRPCSVFHGRPSSVYNSVRFFAAPIQFQPKPKKEEDN GPRLNDEIRAQFIRLVSDDGHTVVSRFQALERARNLKLDLVEVDKNAKPPVCKIMDFHKEAYKKQEKDKERAKSKSEVTL RKGECKEVRISEKTESKDIKMKADMVKKLMEKGYRVKCKATSSNENADLAGSSLSRLLAQIEDVCVVESGPHIARKEVYM VVRHVKYGPSKKGAKKPQDAAQMALKAEEGSANSSDSIEDKNHNSAESGFKFEEVISDGDNHIFFSDASTKDKDSGSPAV LENRYKRADHPGENKSRSNTPNTQVPPAVAENRYQRTDPRNRFQQTIPPNTTGPGVRDGGRWTPSNPNEPRNRYQQTASN NTGPGVRDGVRSTPSNPNEPRNRYQQTAPNNTGPGVRDGARWTPSNPNQMRHAQVDSNVHPRIENTNQGINITPGSRNSI PSPDTVTRNPGAPTTPRTGFGIFSASKGPEAQGSNSRDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 510 | 510 | 6.7E-158 | ||
PANTHER | 1 | 510 | 510 | 6.7E-158 | – | |
Gene3D | 80 | 153 | 74 | 1.4E-22 | ||
SUPERFAMILY | 81 | 153 | 73 | 2.09E-20 | ||
Pfam | 84 | 150 | 67 | 1.6E-23 | ||
TIGRFAM | 84 | 241 | 158 | 1.7E-27 | ||
Coils | 135 | 155 | 21 | - | – | |
Gene3D | 161 | 246 | 86 | 2.9E-9 | ||
Pfam | 164 | 242 | 79 | 8.2E-9 | ||
SUPERFAMILY | 164 | 246 | 83 | 1.24E-11 | ||
MobiDBLite | 248 | 284 | 37 | - | – | |
MobiDBLite | 323 | 519 | 197 | - | – | |
MobiDBLite | 335 | 350 | 16 | - | – | |
MobiDBLite | 385 | 433 | 49 | - | – | |
MobiDBLite | 442 | 494 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi5g1v0349600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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