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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0349600 |
| Transcript ID | LotjaGi5g1v0349600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation initiation factor IF-3; TAIR: AT1G34360.1 translation initiation factor 3 (IF-3) family protein; Swiss-Prot: sp|Q9K867|IF3_BACHD Translation initiation factor IF-3; TrEMBL-Plants: tr|A0A1J7HIQ2|A0A1J7HIQ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66524558..66530791) extracted from Lotus japonicus Gifu genome v1.2.
TGAACACAACCCAATCACACAACTCTATACCAAAAAAAAATTTCACAACTCAACTATGGCACTGTCACGAACATAACAAA ACACTTTGAGGTTGTTGTTCGTTTTCGTTTTCTCCCAAACACACACAAACCTCAGTTTGATTCGTTGAGGTAATGGCGTT TCTGCACCAAATCGGAAAACGTAAGCTGAAAACCGTGTGCATCCAATTGCGCAGATGCTACATTCGTCTTCCGCATGATT CTTCATTGAATTCCACCCCCAAACCTTACCCTTCGGAGATTCCACGTCCGTGCTCGGTTTTTCATGGTAGACCCTCAAGT GTTTATAATAGCGTCAGGTTTTTCGCTGCTCCCATTCAGGTAAATTTTTTCAAACTTTCTGTTGTTGATCAGACTTGAGG ATATCAAGGTTGTGATTGGAAATGGGTTGCTTAGTGATTTGTGATTTGAGACTGGTTTTGGATTAGTATATTACTTTTAT CATCTAAATGGAGGGCATTTTTGTTGCTTATAATCTGTTTTCTTAGGTGTATTTGGATAAACAACTTAATTAGACACTTA TGTCAATAAGCACTTATCACTTAAGCATTTATTATTTGCGAAACTTATCGAAATAAGCTCAAACAAACATATATGTAAGT GTTCAATCACGGGCTAATTTGAGAAATTTATTAAAATAAGCTCTTTTAGCTCAAAAGAGCTTATAAGCTTGATTGAACAC TTTTTTGTGTGTGCATGTTGTAAGATAAACTCAAATAAACTCCTTCAGACATACACTCGTATTGTGTTGTTATTGCTCAT TGTATTAGGCATTGGTGGTTAAAATTGGTACTCCTTGAATTTGATGATGTTTTCTGGGTTTTCAGTTTCAACCAAAGCCC AAGAAGGAGGAGGACAATGGGCCACGGCTGAATGACGAAATCAGAGCTCAATTTATCAGACTTGTGTCAGATGATGGTAA ACCCACGACCCACATTTTAAATCGACGCTGGTTTGGTTGTTTATTTTTGTAGCTTTGTTTATGTTATTAACTTATTATCC TGATTGGTGGCATTGCATGTGTCTGTTAAATCTGACATCTTAGTTTTATTCATTTTTAAACTCTCGTCGTATGAGCATAA AGCGAGACACTCTATTATTAGAAAAATGCTAGGCCATACAATTTCCTAGCTATTTTTTGGCAATCGTACCACATTTGCTC ATCATATATTCATATTAGATAATTGTTTTCCCCTGCTTGATATCAAACCCTTACAGTTTACTACTAAAATCAACTTCAAT ATAGCCTGCAGTTGCTTGCTTAGCGCTAGGAATTTAAAGTTACATGAAGAAATCAGAAACATACACATAATAAAGGATAT ATGTCCTTGAAACTTTGGAGGGTGAATATGTACTGCTTAGAGCTATAGAAATTACTACACGGACTTGGAAAATCAGCTGT GTGCCATTTACTTTATCTATGCACAGAAAAGTTTTGGTTGAGCTTTGGATGTCCCTCTAAATATGAGTCCATGCAGGGCA TACAGTAGTGTCAAGGTTTCAAGCATTGGAACGTGCCAGGAATCTTAAACTTGATCTAGTTGAGGTAAATGATTTTTTTA ATTCTTTCCCCATGTTAACTGTGTATTTTTTAAGAGATACATGCAAAATATAGATGCTGAGTTAAAGTAGGTTATGTCGG AAATTCATCATTTACTGAAGGAATTGTTCTTTTCTTTTTCTTTTTCTGCATTCCTGTCCTGGTGTTTTTTTTTTCCTTCA TTTTTTTATGTCATTCCGTTATTATGGGGATGGCCTTAGCCCTTAAATCCTTCTAACCGTAAGTTGGGGTAATGAGTCGA GGGTGTATGTTTAACATTACATTGTTGTGGGTTTCAAAGAAAAAAATAGTGATAATTTTAATCACCAAATACAACATATC CCTAATATTTGTGATATTTTATGAACGTTGGTCGACTATATACCCATGCATCATATCTGTCAAACTCTTAAGCATTAAAA TTTGCTTCCCCATATATCTTGTGACATTTATTATGAGAGTACTTGGTCATGTTACAGGTTGATAAAAATGCTAAGCCACC AGTTTGTAAGATTATGGACTTCCACAAGGAAGCTTACAAAAAACAAGAAAAGGATAAGGAGCGTGCTAAAAGCAAGGTGG AGTATGCTTTTGATTAATGCAATTGTTTCCAAGTTGCTTGTGAAGTTTCTTTAATTGCTTTTGGTTGAAATCAGTGATAA GAGTTTTTCTCCTGGTCATTTCAATTTAGTAATAACATATGAATCTTTATTAGCAAACGACTGATAAAAGTACATGTTTC ATATTGCATGCTAATTGCTAAAAATGATGGCAACATAATCGGCAATGAGTATAATGAAGTAATGTGATATATAAGTTGGG ATTTCTTTTCATGTTTTGCATGGACTTATTTTCCACTTTTTTTCAAGTCAAGATTGACTTGCTAAGAATGGGTTTGACTG TGGACAATTGGATGATTCCTGTGGAGCTACTATGTGCCTGCCAACTTGGAAAGAATTTGATTATGTTTGGCGGGTCTTGT GCCCTTCATAATAATATGCCTGGCTAAAGAATCAGATTTATGTTCCCATGTCTTGCCGCACACTGACCAGGCTCATAATG TCTAACTCAAATTTCAACCATTGAGCGACTGATTTGAAGGAAAGAAAAAACCAGGAAAAAGCTCTGGCACTGAGCAAAAT GAATATGCTGAGTGAAATCCTTGCTCTATTCTCATAATTCCAACGAATTATCCTGTTGCAGCTAGCTTTCTTATAGCAAG GATAGTTGAAATATGAAACTCTAGGAACTAGGATGTAAAGCCTTGCTTTTCAAGTTCTGAAACGGAAACAGAACCCTATA TTTAGTGTGCTTGAAAAGTTCTTGATCTCCCATAATTCTCATCCCCCACGTTCTTTGACTAATATGGTAAAAAAACATGT TTCATTTTTCAGTGGGTGCTATGCATTTTAATTACTCAGTTATACACTTATACTGCTGTAATTACATGTTTAGGGAGTTG TCAAGGACAAATATTTAATCTTTCGATGTAGTATAGTTTTCTTAATCATTTTTTCTGAAAAATGCAGTCTGAGGTGACAT TGCGAAAGGGGGAATGTAAGGAAGTGCGAATTTCTGAAAAAACTGTAAGTTTTCTTGCTTTGAAATCTTATCTTATAAAT ATTTTAGCAAGTATATTTATTTCATCTCAGAATTGTGAATAGTCTATTGTAAATTAAGTCCAGTAGCACTTAGTTTTCAC TAGGTCTCCAATTGTGGTCTTGTTGATGGGTTCTAAAAGCAATACTTAGCAGTTTTAGCTAGGCCTATATATGTCTGGGG ACCTACGTTGTGGTATTAGTATACATGCAAATATTCAGGTTCTTTACTTGTTGCATTCTATAATCTAGTCCAAGGCTTTT GGTGCCTGGACTAAAAGAGGGAGACACTTGGTGCCATTTGAATCAAACAAGTGATCTGGTGAAGGAGTTAACCATCAAGA TACAATTTGTAGAGAGAAATGTTGAAACTGCAAGATGTTATGTCTTTGGTTTTAACTTAAAAGGTTTCTGGTATATGTAC TTTGAGGGGCTGTCATATTTAATTTCATGAACCTGGAAAATGGGTTTGGATGTATTGAAATTTCTGTTAATGTTTTCAGG AATCAAAAGATATTAAGATGAAAGCAGATATGGTTAAAAAGTTAATGGAGAAGGGTTATAGGGTGAAGGTACTCTCTTAA TCTCTTTTCATATATGGCATATTCCCCCTGTCTGATTTTGATTCATCTTTTCCTTCTGTACTGTCTCCATGGTGTTTGGG GACCAATCTCTTAAAGAGTGTGTTCATTTCTAGGCATCTAGATAATTCCAAACTCGCAAATTTAACATTCTCATGCATGG TACAAAATTCAAACTTTGTAAAAGTATTCCTAGTTATTATTGATTACTAGGAAAAGTAAATGCCCATGTTTCCCTTGCCT TTATTCCTATAGTGAGAGGTAAGTCTTTTCCTTTCCCATAACTTTGCACCCGCATTCCATTCTGTTTCCCTTTTTTTTTT TGGACGAAATAATTTGAAAAAATATTAAATGGTAACCAAACATATTTATGAATTTACTGGGAGAAACAACCTTTGTTACA GTGTTTCTGGGAATATAATTTCAAGGAATACAATGGTACGCCTTGAAACAAACACCCCCTATGTCATTGTGTTTCTTTAT GTTAGAAACTGTGTTTGCTTTCCATGCAAAAGGTTGAGGGTGCATCTAGTTTTGATAAATGATAAGAGGAGAAGAGAATG AGATAATCTTTTACGATATATATCTTTGAACAACATATGTCGCATTCATCCGTTGCCTCATGCAAAGCTTTGATTTGATG TATTGTTAGTTAACTCAGTCACGATTGCCTTTTCATGTTTCTAAATAGTGCAAGGCAACATCAAGCAATGAAAATGCAGA CTTGGCAGGATCATCTTTGTCTCGTCTTTTGGCTCAGGTACAATGGCTCCTGCTTTATTCTGTGTTACCTGGCTAATTTT TACCAGTATTTTTCTTTATTATCCTTCGGTTCTATATCGTAAAAGCTCTTTGCAGATAGAAGATGTCTGTGTTGTGGAGA GTGGACCACATATAGCAAGAAAAGAAGTCTATATGGTAGTCAGACATGTTAAATATGGACCATCCAAGAAAGGTGCGAAA AAACCTCAAGATGCGGCACAGATGGCTCTGAAGGCTGAGGAGGGAAGTGCCAATTCTAGTGATTCTATTGAAGATAAGAA TCACAATTCTGCTGAATCTGGGTTTAAGTTTGAGGAGGTGATTTCTGATGGTGACAATCATATTTTCTTCTCGGATGCGA GTACCAAAGACAAAGATTCAGGATCTCCTGCTGTGTTAGAAAATAGGTATAAAAGAGCTGATCATCCGGGCGAAAACAAG TCTCGTTCCAACACGCCCAACACGCAAGTGCCTCCTGCTGTGGCCGAGAACAGGTACCAAAGAACTGATCCTAGAAACCG GTTCCAACAAACAATACCACCAAATACTACAGGTCCAGGAGTAAGAGATGGAGGCAGATGGACACCCTCGAATCCGAATG AGCCGAGAAACCGATACCAACAAACAGCATCAAATAACACAGGTCCAGGAGTAAGAGATGGAGTCAGATTGTCACCCTCG AATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCATCAAATAACACAGGTCCAGGCGTAAGGGATGGAGTCAGATC AACACCCTCAAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCACCAAATAACACAGGTCCAGGAGTAAGAGATG GAGCCAGGTGGACACCCTCGAATCCGAATCAGATGAGGCATGCCCAGGTCGATAGCAATGTTCATCCCAGAATTGAAAAT ACCAACCAAGGTATTAACATAACTCCTGGATCAAGAAACTCAATTCCTTCACCTGACACTGTCACCAGGAACCCTGGAGC TCCCACTACCCCACGTACTGGTTTTGGCATTTTCAGTGCTTCTAAAGGTCCTGAGGCACAAGGTAGTAACAGTAGGGATG CCTAGGCGCAAAGAAGGGAACTCTCAGGGCTGTACTAGTCTCAGTGAGTTCGAGAAACAACACATATAGCTTGTTTGGAT CAACTTATTTTTCATCAGAATCAATTCTGGCAACCAGTAACTATTCACAAAAGCTTCTTTCCAGAACTGATTCTGACTTT AGAATCAACTATTCAAATGTGGAAGAATTTCCAAACTCGCACTTAGTGTCTTTGGACTTCCGTTGCAATCTATTGTGAGA TATGAATTTCCCTTGAAAGTGCTTTTAAGCATTGGTGGCGGAACTCCAAACAGATTAGATAAAGGGTGTTGGCAACTCTT GCATAGAATAGATAGGCTTAACTAATATATTCATGATAATGACAAACATGGTCTCATGACAGACTATTTTGTTTAGAAAC ATGGATGGATGAAACTATGAGTAACACATTCACAGGCTTGCAGCTGTATTTATCTTGGCTGACGCCTCAGTTTTTTGAGG TGTTTTGCATCATTTAATAATGTTACTTTTGGAATCGAAACACAATTTTGATTTTGTGGAGAAGGGGTTTGTTAACTACC CCAGGGGAAATTTTGATGTATTATGTGATTCTATTATTGTTTAATGTGCACTGAGGCAGCAGATATGATTACTA
CDS sequence (LotjaGi5g1v0349600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTCTGCACCAAATCGGAAAACGTAAGCTGAAAACCGTGTGCATCCAATTGCGCAGATGCTACATTCGTCTTCC GCATGATTCTTCATTGAATTCCACCCCCAAACCTTACCCTTCGGAGATTCCACGTCCGTGCTCGGTTTTTCATGGTAGAC CCTCAAGTGTTTATAATAGCGTCAGGTTTTTCGCTGCTCCCATTCAGTTTCAACCAAAGCCCAAGAAGGAGGAGGACAAT GGGCCACGGCTGAATGACGAAATCAGAGCTCAATTTATCAGACTTGTGTCAGATGATGGGCATACAGTAGTGTCAAGGTT TCAAGCATTGGAACGTGCCAGGAATCTTAAACTTGATCTAGTTGAGGTTGATAAAAATGCTAAGCCACCAGTTTGTAAGA TTATGGACTTCCACAAGGAAGCTTACAAAAAACAAGAAAAGGATAAGGAGCGTGCTAAAAGCAAGTCTGAGGTGACATTG CGAAAGGGGGAATGTAAGGAAGTGCGAATTTCTGAAAAAACTGAATCAAAAGATATTAAGATGAAAGCAGATATGGTTAA AAAGTTAATGGAGAAGGGTTATAGGGTGAAGTGCAAGGCAACATCAAGCAATGAAAATGCAGACTTGGCAGGATCATCTT TGTCTCGTCTTTTGGCTCAGATAGAAGATGTCTGTGTTGTGGAGAGTGGACCACATATAGCAAGAAAAGAAGTCTATATG GTAGTCAGACATGTTAAATATGGACCATCCAAGAAAGGTGCGAAAAAACCTCAAGATGCGGCACAGATGGCTCTGAAGGC TGAGGAGGGAAGTGCCAATTCTAGTGATTCTATTGAAGATAAGAATCACAATTCTGCTGAATCTGGGTTTAAGTTTGAGG AGGTGATTTCTGATGGTGACAATCATATTTTCTTCTCGGATGCGAGTACCAAAGACAAAGATTCAGGATCTCCTGCTGTG TTAGAAAATAGGTATAAAAGAGCTGATCATCCGGGCGAAAACAAGTCTCGTTCCAACACGCCCAACACGCAAGTGCCTCC TGCTGTGGCCGAGAACAGGTACCAAAGAACTGATCCTAGAAACCGGTTCCAACAAACAATACCACCAAATACTACAGGTC CAGGAGTAAGAGATGGAGGCAGATGGACACCCTCGAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCATCAAAT AACACAGGTCCAGGAGTAAGAGATGGAGTCAGATTGTCACCCTCGAATCCGAATGAGCCGAGAAACCGATACCAACAAAC AGCATCAAATAACACAGGTCCAGGCGTAAGGGATGGAGTCAGATCAACACCCTCAAATCCGAATGAGCCGAGAAACCGAT ACCAACAAACAGCACCAAATAACACAGGTCCAGGAGTAAGAGATGGAGCCAGGTGGACACCCTCGAATCCGAATCAGATG AGGCATGCCCAGGTCGATAGCAATGTTCATCCCAGAATTGAAAATACCAACCAAGGTATTAACATAACTCCTGGATCAAG AAACTCAATTCCTTCACCTGACACTGTCACCAGGAACCCTGGAGCTCCCACTACCCCACGTACTGGTTTTGGCATTTTCA GTGCTTCTAAAGGTCCTGAGGCACAAGGTAGTAACAGTAGGGATGCCTAG
Protein sequence (LotjaGi5g1v0349600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLHQIGKRKLKTVCIQLRRCYIRLPHDSSLNSTPKPYPSEIPRPCSVFHGRPSSVYNSVRFFAAPIQFQPKPKKEEDN GPRLNDEIRAQFIRLVSDDGHTVVSRFQALERARNLKLDLVEVDKNAKPPVCKIMDFHKEAYKKQEKDKERAKSKSEVTL RKGECKEVRISEKTESKDIKMKADMVKKLMEKGYRVKCKATSSNENADLAGSSLSRLLAQIEDVCVVESGPHIARKEVYM VVRHVKYGPSKKGAKKPQDAAQMALKAEEGSANSSDSIEDKNHNSAESGFKFEEVISDGDNHIFFSDASTKDKDSGSPAV LENRYKRADHPGENKSRSNTPNTQVPPAVAENRYQRTDPRNRFQQTIPPNTTGPGVRDGGRWTPSNPNEPRNRYQQTASN NTGPGVRDGVRLSPSNPNEPRNRYQQTASNNTGPGVRDGVRSTPSNPNEPRNRYQQTAPNNTGPGVRDGARWTPSNPNQM RHAQVDSNVHPRIENTNQGINITPGSRNSIPSPDTVTRNPGAPTTPRTGFGIFSASKGPEAQGSNSRDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 540 | 540 | 3.2E-157 | – | |
| PANTHER | 1 | 540 | 540 | 3.2E-157 | ||
| Gene3D | 80 | 153 | 74 | 1.5E-22 | ||
| SUPERFAMILY | 81 | 153 | 73 | 2.35E-20 | ||
| TIGRFAM | 84 | 241 | 158 | 1.9E-27 | ||
| Pfam | 84 | 150 | 67 | 1.8E-23 | ||
| Coils | 135 | 155 | 21 | - | – | |
| Gene3D | 161 | 246 | 86 | 3.2E-9 | ||
| Pfam | 164 | 242 | 79 | 8.9E-9 | ||
| SUPERFAMILY | 164 | 246 | 83 | 1.31E-11 | ||
| MobiDBLite | 248 | 284 | 37 | - | – | |
| MobiDBLite | 323 | 549 | 227 | - | – | |
| MobiDBLite | 335 | 350 | 16 | - | – | |
| MobiDBLite | 385 | 406 | 22 | - | – | |
| MobiDBLite | 415 | 463 | 49 | - | – | |
| MobiDBLite | 472 | 524 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi5g1v0349600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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