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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0349600 |
| Transcript ID | LotjaGi5g1v0349600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Translation initiation factor IF-3; TAIR: AT1G34360.1 translation initiation factor 3 (IF-3) family protein; Swiss-Prot: sp|Q9K867|IF3_BACHD Translation initiation factor IF-3; TrEMBL-Plants: tr|A0A1J7HIQ2|A0A1J7HIQ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0349600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66524561..66530798) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGACTGAACACAACCCAATCACACAACTCTATACCAAAAAAAAATTTCACAACTCAACTATGGCACTGTCACGAACA TAACAAAACACTTTGAGGTTGTTGTTCGTTTTCGTTTTCTCCCAAACACACACAAACCTCAGTTTGATTCGTTGAGGTAA TGGCGTTTCTGCACCAAATCGGAAAACGTAAGCTGAAAACCGTGTGCATCCAATTGCGCAGATGCTACATTCGTCTTCCG CATGATTCTTCATTGAATTCCACCCCCAAACCTTACCCTTCGGAGATTCCACGTCCGTGCTCGGTTTTTCATGGTAGACC CTCAAGTGTTTATAATAGCGTCAGGTTTTTCGCTGCTCCCATTCAGGTAAATTTTTTCAAACTTTCTGTTGTTGATCAGA CTTGAGGATATCAAGGTTGTGATTGGAAATGGGTTGCTTAGTGATTTGTGATTTGAGACTGGTTTTGGATTAGTATATTA CTTTTATCATCTAAATGGAGGGCATTTTTGTTGCTTATAATCTGTTTTCTTAGGTGTATTTGGATAAACAACTTAATTAG ACACTTATGTCAATAAGCACTTATCACTTAAGCATTTATTATTTGCGAAACTTATCGAAATAAGCTCAAACAAACATATA TGTAAGTGTTCAATCACGGGCTAATTTGAGAAATTTATTAAAATAAGCTCTTTTAGCTCAAAAGAGCTTATAAGCTTGAT TGAACACTTTTTTGTGTGTGCATGTTGTAAGATAAACTCAAATAAACTCCTTCAGACATACACTCGTATTGTGTTGTTAT TGCTCATTGTATTAGGCATTGGTGGTTAAAATTGGTACTCCTTGAATTTGATGATGTTTTCTGGGTTTTCAGTTTCAACC AAAGCCCAAGAAGGAGGAGGACAATGGGCCACGGCTGAATGACGAAATCAGAGCTCAATTTATCAGACTTGTGTCAGATG ATGGTAAACCCACGACCCACATTTTAAATCGACGCTGGTTTGGTTGTTTATTTTTGTAGCTTTGTTTATGTTATTAACTT ATTATCCTGATTGGTGGCATTGCATGTGTCTGTTAAATCTGACATCTTAGTTTTATTCATTTTTAAACTCTCGTCGTATG AGCATAAAGCGAGACACTCTATTATTAGAAAAATGCTAGGCCATACAATTTCCTAGCTATTTTTTGGCAATCGTACCACA TTTGCTCATCATATATTCATATTAGATAATTGTTTTCCCCTGCTTGATATCAAACCCTTACAGTTTACTACTAAAATCAA CTTCAATATAGCCTGCAGTTGCTTGCTTAGCGCTAGGAATTTAAAGTTACATGAAGAAATCAGAAACATACACATAATAA AGGATATATGTCCTTGAAACTTTGGAGGGTGAATATGTACTGCTTAGAGCTATAGAAATTACTACACGGACTTGGAAAAT CAGCTGTGTGCCATTTACTTTATCTATGCACAGAAAAGTTTTGGTTGAGCTTTGGATGTCCCTCTAAATATGAGTCCATG CAGGGCATACAGTAGTGTCAAGGTTTCAAGCATTGGAACGTGCCAGGAATCTTAAACTTGATCTAGTTGAGGTAAATGAT TTTTTTAATTCTTTCCCCATGTTAACTGTGTATTTTTTAAGAGATACATGCAAAATATAGATGCTGAGTTAAAGTAGGTT ATGTCGGAAATTCATCATTTACTGAAGGAATTGTTCTTTTCTTTTTCTTTTTCTGCATTCCTGTCCTGGTGTTTTTTTTT TCCTTCATTTTTTTATGTCATTCCGTTATTATGGGGATGGCCTTAGCCCTTAAATCCTTCTAACCGTAAGTTGGGGTAAT GAGTCGAGGGTGTATGTTTAACATTACATTGTTGTGGGTTTCAAAGAAAAAAATAGTGATAATTTTAATCACCAAATACA ACATATCCCTAATATTTGTGATATTTTATGAACGTTGGTCGACTATATACCCATGCATCATATCTGTCAAACTCTTAAGC ATTAAAATTTGCTTCCCCATATATCTTGTGACATTTATTATGAGAGTACTTGGTCATGTTACAGGTTGATAAAAATGCTA AGCCACCAGTTTGTAAGATTATGGACTTCCACAAGGAAGCTTACAAAAAACAAGAAAAGGATAAGGAGCGTGCTAAAAGC AAGGTGGAGTATGCTTTTGATTAATGCAATTGTTTCCAAGTTGCTTGTGAAGTTTCTTTAATTGCTTTTGGTTGAAATCA GTGATAAGAGTTTTTCTCCTGGTCATTTCAATTTAGTAATAACATATGAATCTTTATTAGCAAACGACTGATAAAAGTAC ATGTTTCATATTGCATGCTAATTGCTAAAAATGATGGCAACATAATCGGCAATGAGTATAATGAAGTAATGTGATATATA AGTTGGGATTTCTTTTCATGTTTTGCATGGACTTATTTTCCACTTTTTTTCAAGTCAAGATTGACTTGCTAAGAATGGGT TTGACTGTGGACAATTGGATGATTCCTGTGGAGCTACTATGTGCCTGCCAACTTGGAAAGAATTTGATTATGTTTGGCGG GTCTTGTGCCCTTCATAATAATATGCCTGGCTAAAGAATCAGATTTATGTTCCCATGTCTTGCCGCACACTGACCAGGCT CATAATGTCTAACTCAAATTTCAACCATTGAGCGACTGATTTGAAGGAAAGAAAAAACCAGGAAAAAGCTCTGGCACTGA GCAAAATGAATATGCTGAGTGAAATCCTTGCTCTATTCTCATAATTCCAACGAATTATCCTGTTGCAGCTAGCTTTCTTA TAGCAAGGATAGTTGAAATATGAAACTCTAGGAACTAGGATGTAAAGCCTTGCTTTTCAAGTTCTGAAACGGAAACAGAA CCCTATATTTAGTGTGCTTGAAAAGTTCTTGATCTCCCATAATTCTCATCCCCCACGTTCTTTGACTAATATGGTAAAAA AACATGTTTCATTTTTCAGTGGGTGCTATGCATTTTAATTACTCAGTTATACACTTATACTGCTGTAATTACATGTTTAG GGAGTTGTCAAGGACAAATATTTAATCTTTCGATGTAGTATAGTTTTCTTAATCATTTTTTCTGAAAAATGCAGTCTGAG GTGACATTGCGAAAGGGGGAATGTAAGGAAGTGCGAATTTCTGAAAAAACTGTAAGTTTTCTTGCTTTGAAATCTTATCT TATAAATATTTTAGCAAGTATATTTATTTCATCTCAGAATTGTGAATAGTCTATTGTAAATTAAGTCCAGTAGCACTTAG TTTTCACTAGGTCTCCAATTGTGGTCTTGTTGATGGGTTCTAAAAGCAATACTTAGCAGTTTTAGCTAGGCCTATATATG TCTGGGGACCTACGTTGTGGTATTAGTATACATGCAAATATTCAGGTTCTTTACTTGTTGCATTCTATAATCTAGTCCAA GGCTTTTGGTGCCTGGACTAAAAGAGGGAGACACTTGGTGCCATTTGAATCAAACAAGTGATCTGGTGAAGGAGTTAACC ATCAAGATACAATTTGTAGAGAGAAATGTTGAAACTGCAAGATGTTATGTCTTTGGTTTTAACTTAAAAGGTTTCTGGTA TATGTACTTTGAGGGGCTGTCATATTTAATTTCATGAACCTGGAAAATGGGTTTGGATGTATTGAAATTTCTGTTAATGT TTTCAGGAATCAAAAGATATTAAGATGAAAGCAGATATGGTTAAAAAGTTAATGGAGAAGGGTTATAGGGTGAAGGTACT CTCTTAATCTCTTTTCATATATGGCATATTCCCCCTGTCTGATTTTGATTCATCTTTTCCTTCTGTACTGTCTCCATGGT GTTTGGGGACCAATCTCTTAAAGAGTGTGTTCATTTCTAGGCATCTAGATAATTCCAAACTCGCAAATTTAACATTCTCA TGCATGGTACAAAATTCAAACTTTGTAAAAGTATTCCTAGTTATTATTGATTACTAGGAAAAGTAAATGCCCATGTTTCC CTTGCCTTTATTCCTATAGTGAGAGGTAAGTCTTTTCCTTTCCCATAACTTTGCACCCGCATTCCATTCTGTTTCCCTTT TTTTTTTTGGACGAAATAATTTGAAAAAATATTAAATGGTAACCAAACATATTTATGAATTTACTGGGAGAAACAACCTT TGTTACAGTGTTTCTGGGAATATAATTTCAAGGAATACAATGGTACGCCTTGAAACAAACACCCCCTATGTCATTGTGTT TCTTTATGTTAGAAACTGTGTTTGCTTTCCATGCAAAAGGTTGAGGGTGCATCTAGTTTTGATAAATGATAAGAGGAGAA GAGAATGAGATAATCTTTTACGATATATATCTTTGAACAACATATGTCGCATTCATCCGTTGCCTCATGCAAAGCTTTGA TTTGATGTATTGTTAGTTAACTCAGTCACGATTGCCTTTTCATGTTTCTAAATAGTGCAAGGCAACATCAAGCAATGAAA ATGCAGACTTGGCAGGATCATCTTTGTCTCGTCTTTTGGCTCAGGTACAATGGCTCCTGCTTTATTCTGTGTTACCTGGC TAATTTTTACCAGTATTTTTCTTTATTATCCTTCGGTTCTATATCGTAAAAGCTCTTTGCAGATAGAAGATGTCTGTGTT GTGGAGAGTGGACCACATATAGCAAGAAAAGAAGTCTATATGGTAGTCAGACATGTTAAATATGGACCATCCAAGAAAGG TGCGAAAAAACCTCAAGATGCGGCACAGATGGCTCTGAAGGCTGAGGAGGGAAGTGCCAATTCTAGTGATTCTATTGAAG ATAAGAATCACAATTCTGCTGAATCTGGGTTTAAGTTTGAGGAGGTGATTTCTGATGGTGACAATCATATTTTCTTCTCG GATGCGAGTACCAAAGACAAAGATTCAGGATCTCCTGCTGTGTTAGAAAATAGGTATAAAAGAGCTGATCATCCGGGCGA AAACAAGTCTCGTTCCAACACGCCCAACACGCAAGTGCCTCCTGCTGTGGCCGAGAACAGGTACCAAAGAACTGATCCTA GAAACCGGTTCCAACAAACAATACCACCAAATACTACAGGTCCAGGAGTAAGAGATGGAGGCAGATGGACACCCTCGAAT CCGAATGAGCCGAGAAACCGATACCAACAAACAGCATCAAATAACACAGGTCCAGGAGTAAGAGATGGAGTCAGATTGTC ACCCTCGAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCATCAAATAACACAGGTCCAGGCGTAAGGGATGGAG TCAGATCAACACCCTCAAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCACCAAATAACACAGGTCCAGGAGTA AGAGATGGAGCCAGGTGGACACCCTCGAATCCGAATCAGATGAGGCATGCCCAGGTCGATAGCAATGTTCATCCCAGAAT TGAAAATACCAACCAAGGTATTAACATAACTCCTGGATCAAGAAACTCAATTCCTTCACCTGACACTGTCACCAGGAACC CTGGAGCTCCCACTACCCCACGTACTGGTTTTGGCATTTTCAGTGCTTCTAAAGGTCCTGAGGCACAAGGTAGTAACAGT AGGGATGCCTAGGCGCAAAGAAGGGAACTCTCAGGGCTGTACTAGTCTCAGTGAGTTCGAGAAACAACACATATAGCTTG TTTGGATCAACTTATTTTTCATCAGAATCAATTCTGGCAACCAGTAACTATTCACAAAAGCTTCTTTCCAGAACTGATTC TGACTTTAGAATCAACTATTCAAATGTGGAAGAATTTCCAAACTCGCACTTAGTGTCTTTGGACTTCCGTTGCAATCTAT TGTGAGATATGAATTTCCCTTGAAAGTGCTTTTAAGCATTGGTGGCGGAACTCCAAACAGATTAGATAAAGGGTGTTGGC AACTCTTGCATAGAATAGATAGGCTTAACTAATATATTCATGATAATGACAAACATGGTCTCATGACAGACTATTTTGTT TAGAAACATGGATGGATGAAACTATGAGTAACACATTCACAGGCTTGCAGCTGTATTTATCTTGGCTGACGCCTCAGTTT TTTGAGGTGTTTTGCATCATTTAATAATGTTACTTTTGGAATCGAAACACAATTTTGATTTTGTGGAGAAGGGGTTTGTT AACTACCCCAGGGGAAATTTTGATGTATTATGTGATTCTATTATTGTTTAATGTGCACTGAGGCAGCAGATATGATTA
CDS sequence (LotjaGi5g1v0349600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTCTGCACCAAATCGGAAAACGTAAGCTGAAAACCGTGTGCATCCAATTGCGCAGATGCTACATTCGTCTTCC GCATGATTCTTCATTGAATTCCACCCCCAAACCTTACCCTTCGGAGATTCCACGTCCGTGCTCGGTTTTTCATGGTAGAC CCTCAAGTGTTTATAATAGCGTCAGGTTTTTCGCTGCTCCCATTCAGTTTCAACCAAAGCCCAAGAAGGAGGAGGACAAT GGGCCACGGCTGAATGACGAAATCAGAGCTCAATTTATCAGACTTGTGTCAGATGATGGGCATACAGTAGTGTCAAGGTT TCAAGCATTGGAACGTGCCAGGAATCTTAAACTTGATCTAGTTGAGGTTGATAAAAATGCTAAGCCACCAGTTTGTAAGA TTATGGACTTCCACAAGGAAGCTTACAAAAAACAAGAAAAGGATAAGGAGCGTGCTAAAAGCAAGTCTGAGGTGACATTG CGAAAGGGGGAATGTAAGGAAGTGCGAATTTCTGAAAAAACTGAATCAAAAGATATTAAGATGAAAGCAGATATGGTTAA AAAGTTAATGGAGAAGGGTTATAGGGTGAAGTGCAAGGCAACATCAAGCAATGAAAATGCAGACTTGGCAGGATCATCTT TGTCTCGTCTTTTGGCTCAGATAGAAGATGTCTGTGTTGTGGAGAGTGGACCACATATAGCAAGAAAAGAAGTCTATATG GTAGTCAGACATGTTAAATATGGACCATCCAAGAAAGGTGCGAAAAAACCTCAAGATGCGGCACAGATGGCTCTGAAGGC TGAGGAGGGAAGTGCCAATTCTAGTGATTCTATTGAAGATAAGAATCACAATTCTGCTGAATCTGGGTTTAAGTTTGAGG AGGTGATTTCTGATGGTGACAATCATATTTTCTTCTCGGATGCGAGTACCAAAGACAAAGATTCAGGATCTCCTGCTGTG TTAGAAAATAGGTATAAAAGAGCTGATCATCCGGGCGAAAACAAGTCTCGTTCCAACACGCCCAACACGCAAGTGCCTCC TGCTGTGGCCGAGAACAGGTACCAAAGAACTGATCCTAGAAACCGGTTCCAACAAACAATACCACCAAATACTACAGGTC CAGGAGTAAGAGATGGAGGCAGATGGACACCCTCGAATCCGAATGAGCCGAGAAACCGATACCAACAAACAGCATCAAAT AACACAGGTCCAGGAGTAAGAGATGGAGTCAGATTGTCACCCTCGAATCCGAATGAGCCGAGAAACCGATACCAACAAAC AGCATCAAATAACACAGGTCCAGGAGTAAGAGATGGAGCCAGGTGGACACCCTCGAATCCGAATCAGATGAGGCATGCCC AGGTCGATAGCAATGTTCATCCCAGAATTGAAAATACCAACCAAGGTATTAACATAACTCCTGGATCAAGAAACTCAATT CCTTCACCTGACACTGTCACCAGGAACCCTGGAGCTCCCACTACCCCACGTACTGGTTTTGGCATTTTCAGTGCTTCTAA AGGTCCTGAGGCACAAGGTAGTAACAGTAGGGATGCCTAG
Protein sequence (LotjaGi5g1v0349600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLHQIGKRKLKTVCIQLRRCYIRLPHDSSLNSTPKPYPSEIPRPCSVFHGRPSSVYNSVRFFAAPIQFQPKPKKEEDN GPRLNDEIRAQFIRLVSDDGHTVVSRFQALERARNLKLDLVEVDKNAKPPVCKIMDFHKEAYKKQEKDKERAKSKSEVTL RKGECKEVRISEKTESKDIKMKADMVKKLMEKGYRVKCKATSSNENADLAGSSLSRLLAQIEDVCVVESGPHIARKEVYM VVRHVKYGPSKKGAKKPQDAAQMALKAEEGSANSSDSIEDKNHNSAESGFKFEEVISDGDNHIFFSDASTKDKDSGSPAV LENRYKRADHPGENKSRSNTPNTQVPPAVAENRYQRTDPRNRFQQTIPPNTTGPGVRDGGRWTPSNPNEPRNRYQQTASN NTGPGVRDGVRLSPSNPNEPRNRYQQTASNNTGPGVRDGARWTPSNPNQMRHAQVDSNVHPRIENTNQGINITPGSRNSI PSPDTVTRNPGAPTTPRTGFGIFSASKGPEAQGSNSRDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 510 | 510 | 1.0E-157 | ||
| PANTHER | 1 | 510 | 510 | 1.0E-157 | – | |
| Gene3D | 80 | 153 | 74 | 1.4E-22 | ||
| SUPERFAMILY | 81 | 153 | 73 | 2.09E-20 | ||
| Pfam | 84 | 150 | 67 | 1.6E-23 | ||
| TIGRFAM | 84 | 241 | 158 | 1.7E-27 | ||
| Coils | 135 | 155 | 21 | - | – | |
| Gene3D | 161 | 246 | 86 | 2.9E-9 | ||
| Pfam | 164 | 242 | 79 | 8.2E-9 | ||
| SUPERFAMILY | 164 | 246 | 83 | 1.24E-11 | ||
| MobiDBLite | 248 | 284 | 37 | - | – | |
| MobiDBLite | 323 | 519 | 197 | - | – | |
| MobiDBLite | 335 | 350 | 16 | - | – | |
| MobiDBLite | 385 | 406 | 22 | - | – | |
| MobiDBLite | 415 | 494 | 80 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi5g1v0349600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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