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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350000 |
| Transcript ID | LotjaGi5g1v0350000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ; TAIR: AT2G20920.1 chaperone (DUF3353); Swiss-Prot: sp|Q9FN50|CPP1_ARATH Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic; TrEMBL-Plants: tr|I3SNF3|I3SNF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0350000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66598401..66601871) extracted from Lotus japonicus Gifu genome v1.2.
ACCCTCATGGTTTGTATTTGAGATGAAAATTTCATCTGGGTTTGGGTTCTTTGTTTCAAGGCTTAATTTTTTGGGTTTTA CTTATTGTTTCTGGATTTGGGAGTTTGATTTTCCAGCAGCTTTTTGTTCTTGTTCTTGTTCTTGTTGTTGAGTTTGGGAA ATTATATTTAACTTTTACATCGGGGACTAGTATGCAATATTTAGGGATTAATTTGACATCCAAATGTTTTCTCAAGACTC TAGTTCCACATATGCATTCCAGCTAGGCAAAAAAAATAAAAAAAAAAGGATTTTGTTAACGTTCCTTCCATTTTTTAACG TCTGGGACTAATTTGAAATACGTTTGCCACATTCCGGAATCGCGGGATGCATTTTAAAAGTTTAGGGATAAACTTGAAGG CGGGTGACACTTTCAAGGACCAACTTGGCTATTTACCCAATTCAAAACAGTTTGTGAGTTACGTGTAGCCACAGTGGATC AACATTTTTCTTTGCCACCTATGTGGATATTGTAATTGTAATATGAAAGAAAAACATAAAAAATTCATAAAATAATCACA AAAATGTTGCTATAGCTGTTAACATTACTTGTTTGTGGTTACTTGTCATTTTTTCTTTTCTTTTTTTTTGGTTTCTTCTG TTCTGTTCTGTGTGTGTCTCTGACTCACTCCACGCCTCACATTTCCTACGCAAATGGCTGCCACTCTCTCCGTCCGCCCC GACCGTCTCTCCGCCGGTTCATCCTTCCCTAGACCACCGCCTCGGCTCCTCGACGCCGCACGCCGCGGAAAACCAGCCGT CATCGAACCCTGGCGTGGCGCGCCGCTACAAACTCACTGCAGGCGCGCGTTCACGAGGATAGTGCCGCCGGTTCAGGCCG CGTCCCGCGCCGATGACTCTGCACCGTTTGAGATGTCAGTGGAAAACGCTCTCAAGCTGTTGGGTGTCTCCGAGGGCGCT TCCTTCGACGATATACTTCGCGCCAAAAACGCTATCCTCGCTAATTGCAAAGATGACCAGCAAGCGATTGCGCAGGTGAA CTTCTTCAATTTCGTGACCCTTCTCTGAATTTCAATGAATATTACTAGTAAAAAGATGCCCATGATGGAAAATTTTGAAA TTGGTTTCTGGGTCTTCGTTTATGCTGAGTTTGCAGCTATCCATTTTATCTGTGTTAGATTCTGATCTGAAGTGATTATA GAAAACGGGTTATTGGTTGAGTAGAGGGAGCTGAGGATGTTGAAAATTCGGAATCAGAATCACAAATGATAGATGCAAGA GTAGAAATGCCCAAAATTTTCATACACATGTTTAACCAAATGTGTACTTGATTTAACAGCTTAACCAGAATCATGAATCT AAGGCCACCCTCTTTGAAATTCATTGTTATTATTAGTACATAGGTATTTTGTTTGTTAAATATACTTGTTAAATGGTTAG TTAATTAGTTAGTTATCTCTTGCTAACTAAGGAATGTTTTTCTCATCACATTACCTGTGTGGGTTTTGGTTGTGTGTGTA ATAGTTATCTCTTTTTAGAATTCTAGATTCAGTGTCTATGCCACTATTGATGCGATTGGTGGGTTTTTTTTTCCAGGCTG AGGCTGCGTATGACATGTTGCTTATGCAGAGCCTAACTCAGCGGCGAGCAGGAAAAGTAGTAAACAGCAGTGTTCGTTAT GCTGATGTCAAACGTGTGAAGCCAGCGGCTACGGGGTCAATGCCTCCATGGTTAAAGTCGACTATGAAGAAATCGCCTGT TTCAGTTGAGTCACCTTCGAGCGGTGATTTGGGTTTACAAGCTGGAGTGTATGGTGCATTGATGGGTTTAACTTATTTTA GTGGGGTTTCTCCACCCTCTTCAGCTTATGGCGGGGCTGATGTTCCTGGACTCATCCTGGCTGGTAGCTTTGGAGCTTCC CTGTACTTCATGACAAAAAAGAATGTTAAGTTAGGTAAGGAGCTTTCTTAATCTCATGCACTGTATGTCTGTTCATCATA ATTCTTAAGAATTTTTGTTTCATGACTGGCAATTTTCATATTGACTTGTATGTTGGAAAGAAAGGAGCATTAGGAAGGCT ATGAGGGGTGGGAGGTCGAGAAATGGAAAATGAAATGATGACTTTTACCGTGTTTTAACTGTATACTTTGATGATAGATG CACAGATGAATCTATGAGTGGAACGAATCAACCTCAACTTTGTTTTTTCTGAAAATGTCATAAGAATTAATGAACATAAT TTTGTTGTTCGATTTAGTGTGATATGACATGGTTTTTTGTTGATCTTGTCTATGACTATAAATTTTCTAAATTGTTTTCT GAGGTAATGCTCTATTTTTGTGCTGAACTTTTCACTTTCATTGCAATGAGCGATGGAACAAACAATTAGTGGCTCCCATG TTAACCAGTACACCAGACTTTGGCTGAACAATAAGGTCAACCTGTTGCATTGGCTTAATATATTATGTTCTCCCAGACTC CTGGTATTAAAAGTTTAGCTATGGGTTTATAGAAAAACATTATGGTTTTGATGCTGTTAATCACTACTGTTTGAGTGTCT AGTGAGGGTTTTATTTAACTAATAGGAAGGTTATGCCTGTTAAAATGGTTGTGTGGAAGGGATTAAGAAGTAGTATAGCA CTGCAGTTGAAAAAATTGACCTTAACAAATGGTGTTCAACTTGGTGGTTGGAATCTTCTTAAACTATGCTTCATTCGTTG AGATGCACAAACTCTTTTTTTCCTCTCTGGTTTTCATCCTTTGATATTTGCTTATTTTTGCAGGGAAGGCTGTTGGTATA ACCATAGGAGGGCTCATAGTTGGTGCCGTTGTAGGGTCAGCTGTAGAGAACTGGTTGCAAGTGGATATTGTCCCATTTCT GGGCATTCACTCCCCTGCAGCTGTTGTTGGTGAAATCATAATTATTTCTCAATTCTTGGTTTCTCTGTACCTAAGGTAGA CTGAAAAACTTGGTGATCTCCCACGAAAATGTGAAACCTGTAATTATTCATCTGCATGCAGCATGATCATGCCTTGGGTA GACAGGGAAGGGAACCCGTTATAACCACATAGGAGGACTCATAGCTGACTCTGTGATTAGTCAGCTGTAGAGAACTCGTT GCGGGTTGCTATTGTCTCATATCTGGACATACACTACCCTGCTTCTGTTCTTAGTGAAATCATAGTTGTCTCTCAATTGT TGGTTTCTCTGTACCTAAGGTGGAGGGATGGCAAACTTACATTAAAATGTGAAATTTGTAATTATTCATTTGCATGCAAC ATGCTTAGGTTGTGAAATCATTTCATATTGTACAAAACCATGAATAGAATGTAGTTCTTATCTGGCAAATTAGAAGCATG AAACTCAAATTGGAAAGATTGCTATTTATGTTCACGGTTAGTGAGCATATTGCATTCTCAATACAACTTGTTTTCTTTAA TGGACCAAATTGGGGAAACTTGGGAGTTGGT
CDS sequence (LotjaGi5g1v0350000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCACTCTCTCCGTCCGCCCCGACCGTCTCTCCGCCGGTTCATCCTTCCCTAGACCACCGCCTCGGCTCCTCGA CGCCGCACGCCGCGGAAAACCAGCCGTCATCGAACCCTGGCGTGGCGCGCCGCTACAAACTCACTGCAGGCGCGCGTTCA CGAGGATAGTGCCGCCGGTTCAGGCCGCGTCCCGCGCCGATGACTCTGCACCGTTTGAGATGTCAGTGGAAAACGCTCTC AAGCTGTTGGGTGTCTCCGAGGGCGCTTCCTTCGACGATATACTTCGCGCCAAAAACGCTATCCTCGCTAATTGCAAAGA TGACCAGCAAGCGATTGCGCAGGCTGAGGCTGCGTATGACATGTTGCTTATGCAGAGCCTAACTCAGCGGCGAGCAGGAA AAGTAGTAAACAGCAGTGTTCGTTATGCTGATGTCAAACGTGTGAAGCCAGCGGCTACGGGGTCAATGCCTCCATGGTTA AAGTCGACTATGAAGAAATCGCCTGTTTCAGTTGAGTCACCTTCGAGCGGTGATTTGGGTTTACAAGCTGGAGTGTATGG TGCATTGATGGGTTTAACTTATTTTAGTGGGGTTTCTCCACCCTCTTCAGCTTATGGCGGGGCTGATGTTCCTGGACTCA TCCTGGCTGGTAGCTTTGGAGCTTCCCTGTACTTCATGACAAAAAAGAATGTTAAGTTAGGGAAGGCTGTTGGTATAACC ATAGGAGGGCTCATAGTTGGTGCCGTTGTAGGGTCAGCTGTAGAGAACTGGTTGCAAGTGGATATTGTCCCATTTCTGGG CATTCACTCCCCTGCAGCTGTTGTTGGTGAAATCATAATTATTTCTCAATTCTTGGTTTCTCTGTACCTAAGGTAG
Protein sequence (LotjaGi5g1v0350000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATLSVRPDRLSAGSSFPRPPPRLLDAARRGKPAVIEPWRGAPLQTHCRRAFTRIVPPVQAASRADDSAPFEMSVENAL KLLGVSEGASFDDILRAKNAILANCKDDQQAIAQAEAAYDMLLMQSLTQRRAGKVVNSSVRYADVKRVKPAATGSMPPWL KSTMKKSPVSVESPSSGDLGLQAGVYGALMGLTYFSGVSPPSSAYGGADVPGLILAGSFGASLYFMTKKNVKLGKAVGIT IGGLIVGAVVGSAVENWLQVDIVPFLGIHSPAAVVGEIIIISQFLVSLYLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 2.9E-135 | ||
| Phobius | 1 | 203 | 203 | - | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 291 | 291 | 2.9E-135 | – | |
| Pfam | 87 | 290 | 204 | 4.5E-59 | ||
| Phobius | 204 | 226 | 23 | - | – | |
| Phobius | 227 | 232 | 6 | - | – | |
| Phobius | 233 | 254 | 22 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 255 | 265 | 11 | - | – | |
| Phobius | 266 | 290 | 25 | - | – | |
| TMHMM | 268 | 290 | 23 | - | – | |
| Phobius | 291 | 291 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0350000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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