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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0350200 |
| Transcript ID | LotjaGi5g1v0350200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DNAj, putative; TAIR: AT5G23590.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|Q2KI83|DJC17_BOVIN DnaJ homolog subfamily C member 17; TrEMBL-Plants: tr|I1NF82|I1NF82_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0350200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66617113..66620035) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTCTCTCTCGCGTTTGTATTCTCTAGCGAAAGAATTGAATCGTGGCTAGGGTTAGGGTTTCGACCCTCAAACAAGTA GAATGGACGCAGAGATTGATCACTACGCGGTGCTGGGTCTACCGTCCGGCGAAGAAGGCGCCAACCTAACGGAGAAAGAG ATCACCAAGGCATACAGATGGAAGGCCCTCGAACTCCACCCGGACAAGAAGCGCGACGACCCCAACGCCGCCGCCAACTT CCAGCAACTCCGCACCTCCTACGACATCCTCAAGGACGAGAAGGCTCGGAAGCTCTTCGATGACCTGCTTCGCGTCAAGC GCGACCACCAGCGCCGTCAGTCGCAGCGCGACGGGAAGCGGCGTAAGATGATGGACGACCTTGATCGGAGGGAGCGTGAA GCGTCTACGGCGGATCCCTCTGTGAAGGAGCGTGAGGAGGAGGCGAGGATTGCTAGGCAGCTTAAGGAAGAGATTGCGAG GATTCGTGCTATGCATAACAAGAATGCAGTGCCCGATTTGGCTACCATGAAGAAAGAGAGCGCGGGCGGCGGTGGTGGTG GGGTTGCGGTGGATCAAGAGAAGGTTCTGAAAGTTTCCTGGGAGAAGGTGGGTGAAGATTACCCTGCGGAGAAGTTGAGG GAGTTGTTTTCTAAGTTTGGTGAAGTGGAAGATGTGGTCATCAAGGGGAGTAAGAAAAGGGGTTCTGCACTTGTTGTCAT GGCCACTAAAGATGGAGCTGTGAGTTTTTTAATCTTGTTCAATGGTGTTGGTTGATTTTGAGCCATTTATCAGTTTGTGG GACTATGCATGATGGTTGTTGCTTTTGCTAATTGTATTTGAATAACAGTATGTGTGATTTGTACATTTTTTGGTTAATTG TTGGTTTATACAGGTTGCTGCGACAGGAAGCGTGATTGGTCATCTTGCTAATCCCTTGCTGGTTTTACCTCTTAAACCAG CAATGGCGGCAGATTCTTCGAGTGCCCCGAAGGCTGGGGAAACTGAGAGGGTGGGTAATCTGGTTGGGGCTGGATACCAA GCTTTTGAGGATTCTGTTCTGAAGAAACTGCTGCAGAAGGTGTGCTATTCGCTTGTTTACTTTTCACATTGGAATTTCTT TGCTTTTGTCATTTCTTCTTTTAAGTTTACTTATGAGCATATTGAACTTAAGTTTGATACATAAATTCTTATAGCTAAAC AAGGGTTTTTCTTCTAGTGGCTTGATAGAAAGTATAGATCTTGGTTTCATTGTCCTTTTGTGCTCATATGATTCTACTGC TGCACTTTAATATGCCATCTCATTTTGTGTTTGATATACTGCCTAGCTTAGTATGACTACTGTAAGAATAGTCTCAAGAT AATATATTCTGTTTGTGCATCTAGTCATCGAGTAAACATGGCTTCTAAATGTAGAATAATGAGAGGGAAAAAGGACAGTA AATTTAAAATTTGTAGCTTTGGTAGCATTTTACGGTTGGATATAATAGAATGGAATTGCTTGTTACCTTGTTCTATTTTG TTCTCTTCGATTTCACCTTTTGATTGTAACCAAAATGTATCACTTTTTCCACCCTTACCTTATGTCTTGTTCTGTTCTAC TTTTTTTTTATTCTGTTATACTCTTAAGATGCACCAAACTTGAAACATAATCCATATGTTCTATTCTAACTTGTCTACCA AGCGCTACCTTAGGGTTATATCAGGGACTAGTTCTGCTCTGAATGTTTTTCTTTCACTTGTGAACAGTTTTTCTCTGTAT AATGTGTTCCACTCCCATAACACTACATGACATCTGTAACTTATATATCTTACCTGTTTTCTTGACTTGTTTCTATGTGC AGGCTGCAGAAAAGCAAAGATGACGCCGTCTGATGTTAAGCATAAGAATTGATTATTGATGTGGTCATGTCCCCAATTGA AATACAGGTACTGAAACTAACATAGTTGTTCTCAATGATCCCATTATTTGTGATATGTCAACCCGAGTGTTTGTATCCAG ATATACTATTGGATGAATAGTATACTGGAGATCCTATGGTTTTGTTGTATTATATTATATACATTATATATAATTTTTAA TTATTATCATTTTTGGTATTTGGATTTATTATCATTTTGCAATTCATATGTGATGAGTTTTTTCCTGGTGTGAATATAAC GCATAGAACAAGTGTTTCTGCTAATGGAAAGCCAATACCTAATCTTAACCTTAATTATGAGGAAGCTGAGCTTGGGGAGA TCGTGAACAATATATTTCTAACATATTGTGTTTTGCCTTTTCCTAATAGTTATGCAGAATCAAGAATAGGGCATGGGCTT GACAAGCATTGTACACTTCACATACTGGTCATTAACTGATTTTTTGTCCTTGATTGATTATCAGGAGTTTGCAATCTGTG GTTATATAATTCAAGGAAGTTTCCTTTTGACGAAAATCATAAACTGCAATTTGAAGGTGGTGTTCGGTTTTTATTATGTC ACCTTGGGTCCATGACCAAATCCTGCTGGTTTACAAAAGAGAGAGCAAATGGCATCTGATGGAAAGTCTGAGACGAGTGA TTCCCATAAATAATGCCAATCAAGTTGTGCTATGTGCTAGCTTATCAGTTTGGAATTCATTCTGCTATTTGTTTGCAACC CTAAAATGGAAATGGAATTCAGATTATATCCTTTGGGGATATTCTCAACATGATGTACGAAGATTTGTAATTTTGTATAG ACGATATACTGTGCAGGCTGAGAATAGAGAATGCTATATAAATATATTACTAGCGGGATTACCCGTGCCCTGCACGGGTG ACTTTTGTTATTTACAATTTAAATTTCATGTAATATTATGTTTTGTATCTTTTTAGTAAATATATTTTAACAATTGTTTC AACTATATGTTCTTAATAGTGATAATTATGTATTAATCTACCA
CDS sequence (LotjaGi5g1v0350200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCAGAGATTGATCACTACGCGGTGCTGGGTCTACCGTCCGGCGAAGAAGGCGCCAACCTAACGGAGAAAGAGAT CACCAAGGCATACAGATGGAAGGCCCTCGAACTCCACCCGGACAAGAAGCGCGACGACCCCAACGCCGCCGCCAACTTCC AGCAACTCCGCACCTCCTACGACATCCTCAAGGACGAGAAGGCTCGGAAGCTCTTCGATGACCTGCTTCGCGTCAAGCGC GACCACCAGCGCCGTCAGTCGCAGCGCGACGGGAAGCGGCGTAAGATGATGGACGACCTTGATCGGAGGGAGCGTGAAGC GTCTACGGCGGATCCCTCTGTGAAGGAGCGTGAGGAGGAGGCGAGGATTGCTAGGCAGCTTAAGGAAGAGATTGCGAGGA TTCGTGCTATGCATAACAAGAATGCAGTGCCCGATTTGGCTACCATGAAGAAAGAGAGCGCGGGCGGCGGTGGTGGTGGG GTTGCGGTGGATCAAGAGAAGGTTCTGAAAGTTTCCTGGGAGAAGGTGGGTGAAGATTACCCTGCGGAGAAGTTGAGGGA GTTGTTTTCTAAGTTTGGTGAAGTGGAAGATGTGGTCATCAAGGGGAGTAAGAAAAGGGGTTCTGCACTTGTTGTCATGG CCACTAAAGATGGAGCTGTTGCTGCGACAGGAAGCGTGATTGGTCATCTTGCTAATCCCTTGCTGGTTTTACCTCTTAAA CCAGCAATGGCGGCAGATTCTTCGAGTGCCCCGAAGGCTGGGGAAACTGAGAGGGTGGGTAATCTGGTTGGGGCTGGATA CCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCTGCAGAAGGCTGCAGAAAAGCAAAGATGA
Protein sequence (LotjaGi5g1v0350200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAEIDHYAVLGLPSGEEGANLTEKEITKAYRWKALELHPDKKRDDPNAAANFQQLRTSYDILKDEKARKLFDDLLRVKR DHQRRQSQRDGKRRKMMDDLDRREREASTADPSVKEREEEARIARQLKEEIARIRAMHNKNAVPDLATMKKESAGGGGGG VAVDQEKVLKVSWEKVGEDYPAEKLRELFSKFGEVEDVVIKGSKKRGSALVVMATKDGAVAATGSVIGHLANPLLVLPLK PAMAADSSSAPKAGETERVGNLVGAGYQAFEDSVLKKLLQKAAEKQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 109 | 109 | 2.7E-19 | ||
| PANTHER | 1 | 286 | 286 | 8.6E-129 | – | |
| SUPERFAMILY | 4 | 76 | 73 | 1.83E-16 | ||
| SMART | 5 | 68 | 64 | 5.9E-17 | ||
| ProSiteProfiles | 6 | 76 | 71 | 16.767 | ||
| CDD | 6 | 65 | 60 | 2.50638E-14 | ||
| Pfam | 6 | 73 | 68 | 9.6E-18 | ||
| PRINTS | 8 | 26 | 19 | 9.4E-6 | ||
| PRINTS | 31 | 46 | 16 | 9.4E-6 | ||
| PRINTS | 48 | 68 | 21 | 9.4E-6 | ||
| ProSitePatterns | 53 | 72 | 20 | - | ||
| MobiDBLite | 80 | 121 | 42 | - | – | |
| Coils | 117 | 137 | 21 | - | – | |
| Gene3D | 159 | 250 | 92 | 7.3E-15 | ||
| CDD | 167 | 239 | 73 | 2.07085E-22 | ||
| ProSiteProfiles | 169 | 241 | 73 | 8.638 | ||
| Pfam | 177 | 222 | 46 | 3.3E-6 | ||
| SUPERFAMILY | 178 | 223 | 46 | 3.53E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0350200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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