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LotjaGi5g1v0352900.1

Overview

Field Value
Gene ID LotjaGi5g1v0352900
Transcript ID LotjaGi5g1v0352900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Prefoldin subunit, putative; TAIR: AT5G23290.1 prefoldin 5; Swiss-Prot: sp|P57742|PFD5_ARATH Probable prefoldin subunit 5; TrEMBL-Plants: tr|A0A1J7HIW7|A0A1J7HIW7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0352900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:66850038..66857222) extracted from Lotus japonicus Gifu genome v1.2.

GGGGGGACATCGCATGGAGACGAGTTACAACACCTAAATTTCTCCGAGACAAGTTTTTTTTTCTATCTCTCACCTCATTT CACATCTTTCATGCACAAAACATGTTTGATGGAGAGGCAAAGAAGGGATGGGATGATTGAAGAAGAAAAAGTGTGAAGAA TTTGTATAAGGATTAAGAGGAGGTAGAAGAAGAAGAAAGCGCGTGGGAGAAAGAGAGAGGTTTGAGAAGAGTGGAACCCA CCACCCATGTGCCCTCCTCCTGTCTCCACCAGCTCCTGCCGCTCAATCATTAGACCCCTGTTCCCTCTTTCTCCCTCTAT TCAATCACTCCCTCACTCAACTCTCAATTCTTCTTCTTCATCTTCATCTTCATCTTCATCTTCATCTTCATCAATTCAAA TCCCTAGAAATTCACACTGTAACAAACCCTATTCTCACTTCTCTCTACACCTGCTAACTATGTCTAGCTCTGACGGGACC ACCAACGGGTCAATGATTGACCCACAGAGGACCAACCAGCAACAGCAGTTATCAGTCAAGAAACCGCCCTCCAAGGACCG TCACAGCAAAGTCGACGGCCGCGGCCGCCGTATACGGATGCCAATCATCTGCGCCGCCCGCGTCTTCCAGCTCACGCGCG AGCTCGGCCACAAGTCCGATGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCTGAGCCCTCCATCATCGCCGCCACCGGC ACCGGCACCACCCCCGCCAGCTTCTCCTCCGTCTCTGTCTCGCTCCGCGGCGCCTCCAACAACTCCTCGCTCTCTTCTCC TTCGCTTGACCACAAACCCTTGCTTGCTCCTACTCCTACTCCGTTCATTCTCGGGAAGCGTATACGCACCGACGATGATT CCTCCCCCGCCGCCAAGGATGACTCTGTTGGACACTCGCTTGTTGGCTCTGCTGCTCCTGCTGGTTTGTGGGCTCTTCCT GCTAGGCCTGATTTTGGACAGATATGGAGCTTTGCTGCTGCCGCCGCCGCCGCGCCGGAAATGGTGGTGCAGCCGGCTGT GTCGGTGTCTGCTTCTCAGCAGCAGCAGGCTTCGTTCTTCATTCATCATCAGCAGCAGCAGCAACATCAGCAGCATCAGC AAGCCATGGGAGAAGCTTCGGCGGCGAGGGTGGGGAATTACCTTCCCGGGCATCTGAATTTGCTCGCTTCGTTGTCCGGT GGGCATGGAAATTCTGGTCGGAGAGACGATGACCATCGTTGATGGGGTAGTTATTGTTGTGGTAAGTTCATCTTGGTGGA TGGTGCAAGGGGTTGTGGTGGTGGTGGTGGTGTTTTCTTGGTATATATCTATATATATGCATTTTAAGTTCTGTGTTTTT GGCTATTGCTTTGCTGTGTGTGTGGAAAGCTGAAGATTCCAAGTACAATTTAGTGTTAGGTTTTTCTTGGTTTTGAGTGG AGAAGTCCATCAATCAAGGGATTCAATTAGGGCTTTTTCTTCCTTCTGGTTTGGATAATTTAATTAGGCTTTTTAGAAGT TCAAAATTGTTTTAGATTCTGGGGTTTTGATGGAGGAGACAAATGGAGATTATGTGATATTTTTATAGTTGTGGTGATTA TAAATTGCCACAGACAGATTGAGGCTGGAATCGGTTTTCAGAACCTCGATCAGGAAAAATTGTATTGTTTGTTTTGGAGA AGAATGCTCTCCAAGTTGAAGTTCAAGCTTGGAATGATGGATTGCTTCTGTTTCACTACTTTCATAGGGTTTTCAGTTTT GACTGACTGTCCTAATTGGGTCTAGAACTCTTGTTATTCTTGCAGTTGAAGTAATTAGTTGTTGCAAGCTTGTTTCTGAG CTAAGTGAATTGTGTTTATGAAGTTCAATCGTCACTCCCAGTTTGTTGGAGTACCCTACTTTTCAGTATAGATTGTGAAT TCATGTCTCTTGGCTGCAATTGGGGCATCTTTTGAGGGATTGAGCTCCATTGTAAAGGGCCATGTTATGAATTTATTTGG CATAGCTGCTGGTTAGTCATGTTCTCTTTCTCCTCCATGTTCATGCTCCTTGCTGGTCTTAGTTGTTTCAGAGGTTATTG GTGAGCCTCTGTTTTGATATTTTTATCTGCAATTCTTAGCCATTTCTTAGATTGATCAGCGTGAGAATAATGTTTTCTTG TATGTAATGGATTGTTTTGGGGTGCCAGTGATGTGAATAAAAACCCATCTGTTTCTTTCTTTATTTACCAGCTCCTTTTG CAGTTTAATCACTGTTTGCTTTCTGCTTTTAAATTACTCTGTGGCAAATTTTATCTTCTGAATGTACCTAGTAATTATAA TTCAATTGGAGGTTTTGGAACTTCCACTCACCACCAAGTTGAGCATCTTCAGTTTTGTGCTAGTTTTTGCCATTTCCATG GTACTCTTCTGGGGACTTGTGCTCTGGCTATTTCAGTATTTATTAAGGAAAGATAAGGTTAGGTACAATCTGTGTTCATT TCAAGTCTTAAATATACAACTATAAAGATCCAGACTACAGTACATGGTATAGTTACTATATTTGATGTTTCACCTTTGGT AAAAACAGATATGGTGTTTGTGCATTTGATTCAACAGTCAATTTGGTGTTGATAATACTGATAGAAAAACTCTTTTTTTT TACTGTTATGTGCATCTCAATAATGGCACATTTAAATTGGTTGTTATGAATTTGACTTTTATTGCCACACCCTTGGAAAC CATCATGTGCCTGTGCTCCCTGTCTTCCCCCATGTATTTTATTATCCTTGTCAATCCTCATAAGAAAAACACTCTCTGCA TGACAGTTCTGAGTTGAAGTTGAAAAAGGAACCCCAGAAGCATTGATATCCTGTCTAACATTAACTAATTTTGGTAATTC TATTTCAATCCTCCTCCAAATTTAAGTTCATTTGTAAGATGTCTTGCATGTCTGAATCACAATTTAAACTAAGCAGGAGG TAACTTACTTTCTTTTTAAAATCAGATTAATCTAACTTGATTGGATGCATCTTATGGCTGAACATTGTAAACATGATCTC ATTTTCTTGATCCATGGGAGCTGGTGAGAAAATGAGTTATTGGTCAGTCAATATTTGGTTGTTACACTGGTTTAGTCATG CAAGTTGTAACATGTTTTTACTCCTCAGTGCACTGTTTTGAAGTCTCTGGATAGATAAGAAAACTGGAAGAGGTTGTTGG AGCATGCCAACTCATGGATCTTGTACTTTTCTGTGTTGGTGGGGTATTCAAATTGAACATGTTATCTTAATAATTGCTAA ACAGAAGGGTCAGCTCCCAATAATTGATGGGTCCATGGAATTAAATGTCGTGGTGAAAAACAAGTTTAAAAAACCATTGT AGGATGATTTGGACCGTATTTAAACCATTGTATGATGGACGTTTTGAACTTACCTAGGAAACTGATTCTGATTCTGGACC CGCATTATTTTTTAGTGGCATTGCAGTCGACATACATGAATGGGCCATGTTACTTGCAACATGGTTTATTTGTGGGCCGT AATCGAATCCAAATTGCATTAGTTCAGTCTTACTTAGGTTTTCTTCGTTTGTTGAATGTTAGCCGTCAGCTTTTGGGTTT AGGTATTAATTTAATCACCTTCGATGTGAATGTGAGCAAATATGTCATGTTATGATGCGTTAATTAATAATTTTGCATCA TTGTGGCATTGTTTTCTTGTATGAGTTTATCTTCTATTTACTGTTGTTTGGTTGTCCTATTGATTTTAAACAAAACATCA TTGGTTGAAAGAATTCAGGAAAATCTAGAAACCAACACTTGAAATGTGGTTTTCGGGCCTATATGACATGACCGATTAAT AAAAATACTCTAACACTCAACCTTTGTCATATATTCCATATGTCATATATTCCATACATCACAATAGATAGATATCATAT TCATGGAATACGATTCACTTTCAAGATGCCTCCATTCAACAATGTTGGATATGTATTTTCAATTAATGTTTGATATTTTT TTCTATCAATACTAGTAAAGTATGAGTTTCACAATAATAAAGTACATAATGGGGCCTCAACACCCTTCCCTTCCTCCACC ACCTCTTCTCCATCACCCTCTCTCCCCTCAACATCCTCGCCCTTTGCCACAATCACCACCACCGGATCTTCTCGAAAATG GAACCTAGTTCTATATAACTAAACTCCTTCTTGGTAAGATCACAACGCCTTCAACTTCTTCTAAAAGCTCATCGTCTACG TGCTTGTCTCCATCGCTAATGATGACCCTGCGAGGCAACTCACTGAGGTGCAACAGCCACAGAGAACCTCGATCAATAGG GGATAACGACGACATAAGCAACTCTGAATAGATTCACGAAGCGCACATCGATTTTGAGCTTCTCCTTTGTTTTTGTTTTC TAACACCTCATTATCCGCCTCACCGCCTACCTTCCGAATCATCGCTGCAACAATCATCCCTCGTTCCAACATACATCGTA GCATTTGTTGTTTCTCTTCCATATTGGGATTAAGATCTATGGGTTATTTTATTTGAGAACTTTCCCACTGTTGGGGTTTT TTTGTCATGAAAATGGGAACGATGTGAAACAAGTTCAAGAGAAGTGGACATGGGTGAGGGCATGACTCCTCCTCCAAGCA AACAACGACATTGAGATGGAGAATGACGATTCTACCGGACAAATTAGAATAAAAAGTTAAAATTAATTATAACATGGCAA ATCAACGAATTCTAATCATTTACATTACTTTTTCACTTTAAAAAAAAATACATTACTTTTTCAGTGTTCAGAAAAAATTT CGTATGTATATTAGTGCATAATAATAATTTTTTACTTCAGAAAATAACAATTCATTTACCCTTAAGATAAATAAAAAATG ATAAAAAAAGTCATTGAAAAAGAACACATTAGGGGTATCGCTGTTACGACTTACGAATTACACGATCGATCAAATACAAG AGAAGGAGTTGGAGTTGAAGGGTTTTGCGTTCTAAAACATGGCTTCGTCGACGGTAAAGAGCGGCGGCGCCGGTGGCGGC GTCGGTTTGGAGAGGATGAGCGTGGAACAGTTGAAGGCGGTGAAGGAACAAGCGGATCTGGAGGTTAACCTTCTCCAAGA CAGTCTCTCCAACATTCGCACCGCCACCACTCGTCTCGAGATCGCTTCTTCCGCTCTCAACGACCTCGCTCTCCGCCCTC GCGCCTCCAAAATGCTCGTCCCTCTCACTGCCTCTCTCTACGTTCCCGGCACTCTCGACGATTCTCAGCACCTCCTCGTC GATGTTGGAACCGGCTACTTCATCGAGGTATAATCAACTTCTTTCATCTGCTTAGATCTGATTCATGCTGCTACTGCATT CAATTCACAATGATTTCCATCACTAACTACTCATTATATTGTTGATGACAAAATCAGAAAACGATGGATGAAGGAAAAGA TTACTGTGAGCGTAAAATCAATTTGCTCAAATCAAACTTCGATCAACTCGTTGAGGTTAGTTTCTTGTTACAAATCTTCT AGATTGTGATACTGAGTGATATATATGTATATGCACACTGATTGTTCTGTTCTATGCCAAATTGATGCTGGCTTTTCTTT TCAATTATCACTCCTTACAATAGATTAAGGCCAAGTTTGGAAGAGCTTATTTGAGTTTATCTGATAGCATAAGCGCTTAT GTTAGTGTTTGGGAGAGCTTATGCAAACAGTTTATCATAAGCTACTCAGGATAGCTTATGAAAAAGAGCTTATGCTTATA TATAGCTTATTTTCAGTTCATTTCAATAAATTTTTTAAAATAGCTTATGAATAAGCGTCATGAGTGCTTATGACCATAAG CGCCTAATTAAGTTGTTTTCCCAAACGGGACCTAACTGTTGTTTTGGTCTGAGGGTTGTAATTTTTTAATTTTGTGCTAT TTTTGGTTATCATGTTGTGGATAGTGATTGATCAAATTATACTTTTTGAAATAGAATTTTTTTAGCTCCTAATTGGTATT CTGGTTGTTGAATGGGCTGAAGTGAACAATATTTGTGCTTTTATTTGGACTGAGTTACCTTTTCAATGAATTTGTGTTTT AGAAGAATGTACATGTTGCATTTTGTTTGATTCAAAAGAAAGATGAATTTGTACAATTTGCAATGCAGGTTGCATCGAAA AAGAAAAATGTGGCGGATGAAGTTGGGATGCTTTTACAAGCAAAACTGAAGCAGTTAGCATCTTCATCCTAAGATTAGCT GGTATAGAATTCAATTACTTTCTTTCAGTGCATTGTACCATAGAAAACTATAAGTAACCAGTGGTGTTGTAGTTGGTGAT GTTATCTTTTGGTTAAACCTTATTTGAAAAGCTCCCCTTTTGTTGGATAGCTAAAGAATATAGTTTGGAACTATTGGAGC TGTGTTTACCATTTAGAAAATCTAGTCAGACAATGATAATTGAAAAAAAAAAAAAGGCTTCTCAGGTAGTCTTTCTATTA CTAGGGTGGCATTTGGTGACCAGAAAGAACAAGAATGAGTTTTATTTTATATTTGGTGCATGTTACTAGCAGAACAGAAG ATGGCATAAAGGGAAAAAGTGGTGCATTTTATTTCTACTGAACATAGTGGAATCAAACAAAACTGAACAGAAAGTTTTAT TTTGTTGTGTCAAAACACTACCAAATCTTTAATTAGAGAAGACAGTTGAGCAGTCCTTGTTTTTTTCCAGCCTAACTATT TTAGGCATGTTCTCAATTCATCATAGTTGTTTCAGATTATTGTTTTAACATGGAGGGAAAAGAAAGATGTGCACCCCCTT CTCTTCCCTTTGGACTGCTGTAATAATCTGGAACAAGCAAATGAAGGGAGGTGCGTGAGAGTGCTTGGCTGGTGTTGTAC TTGAGCATGAGGGCTACTGCAATGTTCTGGAACAAATTAATGAAGGAGATTACTTGACAGACCTTGATTGGTATTGTGCT CGAGCTTGTGAATTCTATTGTTTATCGAGACCTAGAGTAAACTTTAAGATGAGATTTTCTTTAATTGAATTACATAATTA TTGAAATTATATTTAAATTTTATCGAGTTTTTCAGAATAAAAAATTACGAAATTATAATCAGTGTTGTGTAGATAATAAA AACAAGTCATTCAACGAAACATCAATGATTTTTGGTAAGGTATGCATTTTGAAAAGTGAGTGTTC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0352900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCGTCGACGGTAAAGAGCGGCGGCGCCGGTGGCGGCGTCGGTTTGGAGAGGATGAGCGTGGAACAGTTGAAGGC GGTGAAGGAACAAGCGGATCTGGAGGTTAACCTTCTCCAAGACAGTCTCTCCAACATTCGCACCGCCACCACTCGTCTCG AGATCGCTTCTTCCGCTCTCAACGACCTCGCTCTCCGCCCTCGCGCCTCCAAAATGCTCGTCCCTCTCACTGCCTCTCTC TACGTTCCCGGCACTCTCGACGATTCTCAGCACCTCCTCGTCGATGTTGGAACCGGCTACTTCATCGAGAAAACGATGGA TGAAGGAAAAGATTACTGTGAGCGTAAAATCAATTTGCTCAAATCAAACTTCGATCAACTCGTTGAGGTTGCATCGAAAA AGAAAAATGTGGCGGATGAAGTTGGGATGCTTTTACAAGCAAAACTGAAGCAGTTAGCATCTTCATCCTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0352900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSTVKSGGAGGGVGLERMSVEQLKAVKEQADLEVNLLQDSLSNIRTATTRLEIASSALNDLALRPRASKMLVPLTASL YVPGTLDDSQHLLVDVGTGYFIEKTMDEGKDYCERKINLLKSNFDQLVEVASKKKNVADEVGMLLQAKLKQLASSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12674
14 154 141 3.4E-51 –
PANTHER
PTHR12674:SF2
14 154 141 3.4E-51 –
Gene3D
G3DSA:1.10.287.370
16 155 140 1.8E-32
IPR009053
SUPERFAMILY
SSF46579
21 153 133 3.66E-24 –
Coils
Coil
22 42 21 - –
CDD
cd00584
22 150 129 1.44735E-29 –
TIGRFAM
TIGR00293
22 151 130 2.3E-34
IPR011599
Pfam
PF02996
35 150 116 2.3E-27
IPR004127

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0016272
Cellular component Prefoldin complex A multisubunit chaperone that is capable of delivering unfolded proteins to cytosolic chaperonin, which it acts as a cofactor for. In humans, the complex is a heterohexamer of two PFD-alpha and four PFD-beta type subunits. In Saccharomyces cerevisiae, it also acts in the nucleus to regulate the rate of elongation by RNA polymerase II via a direct effect on histone dynamics.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0352900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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