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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0353400 |
| Transcript ID | LotjaGi5g1v0353400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein, putative; TAIR: AT5G23340.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|I3SW78|I3SW78_MEDTR F-box/LRR protein; Found in the gene: LotjaGi5g1v0353400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66912971..66915468) extracted from Lotus japonicus Gifu genome v1.2.
ATCATGTTCCTTACATCATTCATCTGTCTTCTTATAATTAAAGTGTGAGTTGAAGAGAAGTATGAATCAATCATTTATTC ATCATTTCAAGATATGAAAGTAATGAACATATTACTCAATCTGTCGAAATCGCCCCTGAGCAAAAGCCATGAATAGGGTG AAGTAGGATCATTTTCACGTAAATTCACACACTTGGATTCATTGTTGCTTTACCTTCAAATTCAATCTTCCCTTCGCTTA GGGTTTCCTCTGCACCACCACATCACATCAATGGCTTCCACCTCGATTCTCTGCATCAACGACGCCCTCACCGACGACGA GCTGCGTTCGATTCTGGCCAAGGTCGACACCGACAAGGACAAGGAAACATTCGGCTTGGTCTGCAAGAGATGGCTCCGCT TGCAGAGCACCGAACGGAAGAAGCTCGCCGCACGTGCCGGCACCCACATGCTCCGCAAAATGGCTGATAGGTTCACACGC TTGGTGGAGCTCGACCTTGCTCAATCCGTTTCTCGTTCGTTCTTCCCTGGTGTCACCGATTCTGATCTCGCTGTGGTCGC CAATGGCTTCACTTGCTTGAGGGTTCTCAATTTGCACAATTGTAAAGGTTGTCAGCTCAATCTCTGAACTTCAATTTCAA TTCTGTTTGATTTTTGTTCATATGAACTTAATTCTGATATTTGCTGTAATAATTGTTAGCATTTTTAGTTGATGTGGTTA TGATGTTATCTAATATGAATGATGATTGAGGACTAGTCTACCACATTTTAAGGGTTTCTTTTATGATTGTTTGAATTGTT TTTATGATACAGGAAGTTCAACTTCAAATTAACATTGGAATGGCAATTTGTTGTTTTGTTTGTGTTGATGTACAGGAATT ACGGACGTTGGAATGAAAGCGATTGGAGATGGTCTTTCGTTGTTGCAGTCCTTGGATGTATCCTACTGCAGAAAGCTGAC TGATAAGGGATTGTCAGCTGTTGCGGAAGGCTGTTGTGACTTAAGGGTGTTGCATCTCGCTGGATGCAGATTTGTTTCGG ATGGTATATTAGAGGCTCTCTCAAAAAACTGCCATAAATTAGAGGAGTTGGGGTTGCAAGGTTGCATAAATATTACTGAC AACGGGCTGATAAACCTTGGAAGTGGTTGTAAACAGATCAAGTTTTTAGACCTCAATAAATGCAGTAATGTAAGCGATGC CGGGGTTTCTAGTATTTCTAAGGCCTGCTCGTCTTCTCTCAAGACATTGAAGCTGTTAGATTGCTACAAAATTGGGGATG AAACCATACTATCATTGGCCAAATTCTGTGACAATCTGGAGACTTTAATCATTGGTGGTTGTCGTGATGTTTCTGATGAT GCAATAAAGTCGCTGGCGACTGCTTGTAGAACCAACCTTAAGAACTTAAGGATGGATTGGTGTCTGAACATCTCTGATTC TTCATTGAGCTGCATTTTAAGCCAATGCAGAAATCTTGAGGCACTGGACATTGCTTGCTGTGAAGAGGTGAGCGATGCTG CTTTTCAGAATATAGGCAGTGGGGAGCCTGGTTTGAATTTGAAGATTTTGAAGGTCAGTAATTGTCCAAAGATCACAGTG ACAGGCATAGGCATTCTTGTGGGTAAATGCGCCTGTCTGGAGTACTTGGATGTTAGGTCATGCCCACATATTACAAAGGC CGGCCTCGATGAGGCTGGTTTCGATTTTCCTCAGTGCTGTAAGGTTAATTTTAATGGTAGCATCAGCGAGCCTATTGAGC TTCTTTGATACTAAAATTATCGTTGAAGATTGACATAGATCTTCCTGTGTGAACTTTCTAGATAGGGCGTGCCTATGGAA ATTCTTTTGGTTTAAACTATGTGTCCTCCATTGAGGTAGTCCTATTCGAGCTGGTTAGGACCACTATAGGCGGCAAAACT CTCTCTAGTGACTTGAATCCGAGAACAACCTCATATCAATTGATCTACGCAGTTGGTGCTAGGAAATTTGATGAGAATAT TGTAAGTTCTATTGATTTTAGTTTTCTTGTGCACCCCGGTGTGTTGTGTATCATTTGTATTGACTTATATTGGATGTATC ATAATTTATTGATCTTTTCAGTTGTAAATTTAACAAGTACAATTGCTTTTGGCTTTTGTATTTTTTCCCCTCCTGCTAAA AGGTTGCATTTGTTTTGTTTACACGAATCGCCTGGAAATCAGCATGGGAAAATCATCTTTCGTATAACGATTGAGAATTA CTTACAAAAGTTTGTTTTATTTGATGAAGGGAAAGCTTTATTACTGGTTCTGACTGATTTAAGCAAGATTACCCTCTACA GAGAATATTTGTGTACTCATAAAAGAATGTGCACATATAATTTTTTTTATGTGAATCACCGAGATAATTATGTTTGAGCC GGTGGAATCACTATGTGCAGCGTAACTTTTGCCACAAAGTAATACAATTGCATTCATAGGGACTCAAATCTGAGATTTCT GTTTAAGCTAGAACAACC
CDS sequence (LotjaGi5g1v0353400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCACCTCGATTCTCTGCATCAACGACGCCCTCACCGACGACGAGCTGCGTTCGATTCTGGCCAAGGTCGACAC CGACAAGGACAAGGAAACATTCGGCTTGGTCTGCAAGAGATGGCTCCGCTTGCAGAGCACCGAACGGAAGAAGCTCGCCG CACGTGCCGGCACCCACATGCTCCGCAAAATGGCTGATAGGTTCACACGCTTGGTGGAGCTCGACCTTGCTCAATCCGTT TCTCGTTCGTTCTTCCCTGGTGTCACCGATTCTGATCTCGCTGTGGTCGCCAATGGCTTCACTTGCTTGAGGGTTCTCAA TTTGCACAATTGTAAAGGAATTACGGACGTTGGAATGAAAGCGATTGGAGATGGTCTTTCGTTGTTGCAGTCCTTGGATG TATCCTACTGCAGAAAGCTGACTGATAAGGGATTGTCAGCTGTTGCGGAAGGCTGTTGTGACTTAAGGGTGTTGCATCTC GCTGGATGCAGATTTGTTTCGGATGGTATATTAGAGGCTCTCTCAAAAAACTGCCATAAATTAGAGGAGTTGGGGTTGCA AGGTTGCATAAATATTACTGACAACGGGCTGATAAACCTTGGAAGTGGTTGTAAACAGATCAAGTTTTTAGACCTCAATA AATGCAGTAATGTAAGCGATGCCGGGGTTTCTAGTATTTCTAAGGCCTGCTCGTCTTCTCTCAAGACATTGAAGCTGTTA GATTGCTACAAAATTGGGGATGAAACCATACTATCATTGGCCAAATTCTGTGACAATCTGGAGACTTTAATCATTGGTGG TTGTCGTGATGTTTCTGATGATGCAATAAAGTCGCTGGCGACTGCTTGTAGAACCAACCTTAAGAACTTAAGGATGGATT GGTGTCTGAACATCTCTGATTCTTCATTGAGCTGCATTTTAAGCCAATGCAGAAATCTTGAGGCACTGGACATTGCTTGC TGTGAAGAGGTGAGCGATGCTGCTTTTCAGAATATAGGCAGTGGGGAGCCTGGTTTGAATTTGAAGATTTTGAAGGTCAG TAATTGTCCAAAGATCACAGTGACAGGCATAGGCATTCTTGTGGGTAAATGCGCCTGTCTGGAGTACTTGGATGTTAGGT CATGCCCACATATTACAAAGGCCGGCCTCGATGAGGCTGGTTTCGATTTTCCTCAGTGCTGTAAGGTTAATTTTAATGGT AGCATCAGCGAGCCTATTGAGCTTCTTTGA
Protein sequence (LotjaGi5g1v0353400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSILCINDALTDDELRSILAKVDTDKDKETFGLVCKRWLRLQSTERKKLAARAGTHMLRKMADRFTRLVELDLAQSV SRSFFPGVTDSDLAVVANGFTCLRVLNLHNCKGITDVGMKAIGDGLSLLQSLDVSYCRKLTDKGLSAVAEGCCDLRVLHL AGCRFVSDGILEALSKNCHKLEELGLQGCINITDNGLINLGSGCKQIKFLDLNKCSNVSDAGVSSISKACSSSLKTLKLL DCYKIGDETILSLAKFCDNLETLIIGGCRDVSDDAIKSLATACRTNLKNLRMDWCLNISDSSLSCILSQCRNLEALDIAC CEEVSDAAFQNIGSGEPGLNLKILKVSNCPKITVTGIGILVGKCACLEYLDVRSCPHITKAGLDEAGFDFPQCCKVNFNG SISEPIELL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 166 | 155 | 8.3E-24 | ||
| PANTHER | 57 | 284 | 228 | 1.2E-107 | – | |
| PANTHER | 57 | 284 | 228 | 1.2E-107 | – | |
| SUPERFAMILY | 59 | 385 | 327 | 4.71E-46 | – | |
| PANTHER | 86 | 401 | 316 | 1.2E-107 | – | |
| PANTHER | 86 | 401 | 316 | 1.2E-107 | – | |
| SMART | 100 | 125 | 26 | 1.3 | ||
| Pfam | 101 | 122 | 22 | 0.037 | ||
| SMART | 126 | 151 | 26 | 0.0094 | ||
| Pfam | 128 | 149 | 22 | 0.0097 | ||
| Pfam | 152 | 175 | 24 | 0.87 | ||
| SMART | 152 | 177 | 26 | 38.0 | ||
| Gene3D | 167 | 404 | 238 | 2.7E-44 | ||
| SMART | 178 | 203 | 26 | 1.7E-6 | ||
| SMART | 204 | 229 | 26 | 0.12 | ||
| SMART | 231 | 256 | 26 | 0.24 | ||
| SMART | 257 | 282 | 26 | 0.41 | ||
| SMART | 284 | 309 | 26 | 48.0 | ||
| SMART | 310 | 335 | 26 | 1.1E-4 | ||
| SMART | 338 | 363 | 26 | 26.0 | ||
| SMART | 364 | 388 | 25 | 130.0 | ||
| Pfam | 364 | 383 | 20 | 1.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0353400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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