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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0356800 |
| Transcript ID | LotjaGi5g1v0356800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT3G55340.1 phragmoplastin interacting protein 1; Swiss-Prot: sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2; TrEMBL-Plants: tr|A0A151U820|A0A151U820_CAJCA Protein gar2; Found in the gene: LotjaGi5g1v0356800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67152523..67155917) extracted from Lotus japonicus Gifu genome v1.2.
CTTAATTTAAAAGCTTCATACGACGTCGTTTGCTGCGTGTTCCCCTAGTTGCATCTTCTTTCTTCCCCAAACCTGGAACT CATTCTTCAAACTCCATTGTTTCGCGGCGTGAAACTGCAAACGTTGATTAGCAAATCATGGTTCTATCGAACAAGAAGCT GAAGCAGAAGCTTAGAGCTGAATCAGCTCAAAACCTAATCAACTCCAACGCTGTTGTTGTTGCTGCTCCTGATACCTCTT TCAAACAGCTTTTGGATACTGCTAGCCACACACCCAGATTGTCCAAGAGAGATGTTCTCAGAAAGCTTCGATCGTTGCAA CCCCCTTCAAAAGCTGCTGCTCCCAAAGATAAAGGAACGAACAAGGAAAATGGGGTTGAGGATTCAGGCAATCAGAAGAA GAAGAACAACAACAAGAAGAGAAAAGGGGAGGTGAAGGATGATGATGATGTGACTAATGGGGTGATCAGCGATGCCAGTG AATCAAAGAAGCAGAAGCAGAATAAGGCGAAATCTAAGAAGCAGAATAAGGCGAAATCGAAGGAGCAGAAGCAGAATAAG GTGACAGAAAACGGTTCAAATAATGAACCGGAAATGTCAGAGGCTACAGAGTTAACCAAGACCAATCCCTCTATCAGGTG ATATAACATTATAGCCACTGTTACCAATCTCTCTATGTTATTGTTTGTCTATAAGAAGAGTTCAAATTGGTTTTTGAGTG CTAAGCCTGTTTGTAATGGTAACAACAGATATCTGTATATAGCTTGATAGTTGGATTGGTATTTACTATTTAGTTGTAGT ATTGCAGTTCATGAAAGAGTGTTCATTTTGTGTGATTGTGAGCTGAAATGGTTTTGCTTTTTTGTTATTTATTTATTTAT TAAATATACAATGTGAAATTTTTTACCCCTTTTAAATTGGTTTATATGTTCCTTGATATATTCAGTGAAGACAATGGTGG TGTTCCTACAAAAGTTTATGTTGGAGGAATTCCATATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTG GCACTATCACTGAAGTTGATTGCTTGAGTTTTCCTGATACTGGGAAGTTTAGAGGGATTGCCCTTATTAGTTTTAAGGTG AGCACTAAAACAGTATTCATTTTAAGTTTATTTATTCTTTTTCTTTATTTTCCATCCACACTACCTCCCTTATTCTTAAC TGTTTGGTATTATGCAATTTTAAGTTAAATCTATAAACTCTTTTTGGGCTTGATTACATGGTAGGATTGATTACAATAGA AGCCTTGCCTTATTAAAATGCTCAGGGAATCCTTTAGTAAACTATCATTTTGCATGCAAATATATTTGAATCGATTCCAC GTGCTAGAAGCTACCCTCAATAGCTCATGGTTTAACATGGTTTTTTCATTCAAAGTGAGCCTTCAATGCGCATCTAAACC TACTAAATATCAGTTGAGCCCTTAAGATTTATCGCAGGTCATATTAGCAACACATGATAAGTCTTCTTCCATAAGTAGAT ATGTTGTTTGAAAAGTTGATCATAACTTAGAGCCAATAGACAATTTCAAAAGTTGGTTCTTGGTTATAGGTATATCATTT TTGTAAGCTGCTAACGTTTCTGTGGCATTCCTCCTGCAGACTGAAGCGGCGGCCAAACGAGCATTGGCTTTGGATGGAGC TGACATGTTAGTAACACGAGCAATTTTCTTTTACAGAAGATGATTCACTCTTATTGCTCATTTCTGAATTCTGATGTCAT GCTTATGAAACATTTAATGTGTAACAGGGGAGGACTCTTTCTTAAAATCCAACCATATAAAATCCAATCACAGAAGTCAA CTCGATTCGCTCCAGAAACAGTAGAGGGATACAACAGAATATATGTTGGTAATTTGTCAGGGGATATAAAAGAGGGAGAA TTGAGGAAATTCTTCTCCAATTGCAATATAACATCACTGCGATTCGGTATGGACAAGGAAACGGGGGAATTCAAAGGGTA CGCCCATGTCGATTTTGGCGATAGTCAGTCACTGAAGACAGCGCTTACTTTGGACCAATGCGTTTTGCTTGGAAGACCTG TCAGGGTAAGTCATGCAGTTCCTTTGAAGAATTTGAAGAAAAAAACAGATGAGGAGCCGGGATCCACTGGAAATACCAAG ATGAAGAATAGGAGATGTTACAATTGCCATGAAAAGGGACATTTTGATTCTCAATGCCCGAAGAAAATACCTGCAGTTCC TTTGACGGATTTGCAGGAAAAACCAGATGAGGAGCGTGCAGTTCCTTTGACGAATTTGGAGGAAAAACCAGACGAGGAGC CAAGATCCACTGGAAATACCAAGATGAAGAATAGGAGATGTTACAATTGCCATGAAAAGGGACATTTTGATTCTGAATGC CCGAAGAAAATACCTGCAGTTCCTTTCACGGATTTGCAGGAAAAACCAGATGAGGAGCGTGCAGTTCCTTTGACGAATTT GGAGGAAAAATCAGAGGAGCCAAGTTCCAGTTTAAGTAACAAGAAGAAGAATAGGAGATGTTACAATTGCCGTGAAAAAG GACATCTTGATTCTGAATGCCCGAAGAAACAATCTTCCATCGTGTAGACAGTTTGATTGTAGAACTCAATGTCATTGGTT TTGTTTCTTCAAGTAGGTGTTGTTTCTTCAATCGACAATTATTTATATCTTGAAATTTTGCTTAACGAAATTCATCAATA GCTGCAAGAGATTGTGAAATTTTATGGTTATCTGTGCCTGTGTTTACTATCTGATTGATAATTTGTTTTTTTGTTCAATC ACTTTGTGCAGTATTTCTTATTCTTATGTTAGCACCATTGTTCTTTAAAAATAATTGGGAAATGCTTATCATTACAACAA GTTTAACGATGAATAAGACCAAATGGGACAATATCTTTTAGTTGACAGTTTCCTACTTCTCGTATCCTTATCATTTCCCC CCCTCCACTAGTTCATGCACATTCTGTTTTGTTGCCAAGGTTTCGATACAGATTGCAGCCTAGTACAAGGTTGAAAACAA GACTTGTGAAGGAAACCAGAAGATGTCACTCACTCATTTGAGCAGAAGGGAAGAGATCAGTGCTCATTCTTTGGTGTTGA GTTAGGCTATATTTGTGCCAAGTGAATCTCATAGCAAGCGGCACAATGATCCTCCAACCATATAGATGATCCTAAGGGTG TCCAAGAAAAGTTCTAGCAAACCGTTATAATACCAATTATCGTATATGGTACCAAGCGAATGTTGAGATTTAATAGAACA ATGTAAGAAAAAGTTAGAGCAACATAAATAAATGATAATGTTAAGATGAAATGATGAATGAATGACATGCTCCAATTTTC CTTTGCTGATTTGTTTTTTTATGAATTTTGATTCA
CDS sequence (LotjaGi5g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTATCGAACAAGAAGCTGAAGCAGAAGCTTAGAGCTGAATCAGCTCAAAACCTAATCAACTCCAACGCTGTTGT TGTTGCTGCTCCTGATACCTCTTTCAAACAGCTTTTGGATACTGCTAGCCACACACCCAGATTGTCCAAGAGAGATGTTC TCAGAAAGCTTCGATCGTTGCAACCCCCTTCAAAAGCTGCTGCTCCCAAAGATAAAGGAACGAACAAGGAAAATGGGGTT GAGGATTCAGGCAATCAGAAGAAGAAGAACAACAACAAGAAGAGAAAAGGGGAGGTGAAGGATGATGATGATGTGACTAA TGGGGTGATCAGCGATGCCAGTGAATCAAAGAAGCAGAAGCAGAATAAGGCGAAATCTAAGAAGCAGAATAAGGCGAAAT CGAAGGAGCAGAAGCAGAATAAGGTGACAGAAAACGGTTCAAATAATGAACCGGAAATGTCAGAGGCTACAGAGTTAACC AAGACCAATCCCTCTATCAGTGAAGACAATGGTGGTGTTCCTACAAAAGTTTATGTTGGAGGAATTCCATATTATTCAAC TGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACTATCACTGAAGTTGATTGCTTGAGTTTTCCTGATACTGGGA AGTTTAGAGGGATTGCCCTTATTAGTTTTAAGACTGAAGCGGCGGCCAAACGAGCATTGGCTTTGGATGGAGCTGACATG GGAGGACTCTTTCTTAAAATCCAACCATATAAAATCCAATCACAGAAGTCAACTCGATTCGCTCCAGAAACAGTAGAGGG ATACAACAGAATATATGTTGGTAATTTGTCAGGGGATATAAAAGAGGGAGAATTGAGGAAATTCTTCTCCAATTGCAATA TAACATCACTGCGATTCGGTATGGACAAGGAAACGGGGGAATTCAAAGGGTACGCCCATGTCGATTTTGGCGATAGTCAG TCACTGAAGACAGCGCTTACTTTGGACCAATGCGTTTTGCTTGGAAGACCTGTCAGGGTAAGTCATGCAGTTCCTTTGAA GAATTTGAAGAAAAAAACAGATGAGGAGCCGGGATCCACTGGAAATACCAAGATGAAGAATAGGAGATGTTACAATTGCC ATGAAAAGGGACATTTTGATTCTCAATGCCCGAAGAAAATACCTGCAGTTCCTTTGACGGATTTGCAGGAAAAACCAGAT GAGGAGCGTGCAGTTCCTTTGACGAATTTGGAGGAAAAACCAGACGAGGAGCCAAGATCCACTGGAAATACCAAGATGAA GAATAGGAGATGTTACAATTGCCATGAAAAGGGACATTTTGATTCTGAATGCCCGAAGAAAATACCTGCAGTTCCTTTCA CGGATTTGCAGGAAAAACCAGATGAGGAGCGTGCAGTTCCTTTGACGAATTTGGAGGAAAAATCAGAGGAGCCAAGTTCC AGTTTAAGTAACAAGAAGAAGAATAGGAGATGTTACAATTGCCGTGAAAAAGGACATCTTGATTCTGAATGCCCGAAGAA ACAATCTTCCATCGTGTAG
Protein sequence (LotjaGi5g1v0356800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSNKKLKQKLRAESAQNLINSNAVVVAAPDTSFKQLLDTASHTPRLSKRDVLRKLRSLQPPSKAAAPKDKGTNKENGV EDSGNQKKKNNNKKRKGEVKDDDDVTNGVISDASESKKQKQNKAKSKKQNKAKSKEQKQNKVTENGSNNEPEMSEATELT KTNPSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEAAAKRALALDGADM GGLFLKIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFFSNCNITSLRFGMDKETGEFKGYAHVDFGDSQ SLKTALTLDQCVLLGRPVRVSHAVPLKNLKKKTDEEPGSTGNTKMKNRRCYNCHEKGHFDSQCPKKIPAVPLTDLQEKPD EERAVPLTNLEEKPDEEPRSTGNTKMKNRRCYNCHEKGHFDSECPKKIPAVPFTDLQEKPDEERAVPLTNLEEKSEEPSS SLSNKKKNRRCYNCREKGHLDSECPKKQSSIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 445 | 443 | 2.7E-134 | – | |
| PANTHER | 3 | 445 | 443 | 2.7E-134 | – | |
| MobiDBLite | 41 | 173 | 133 | - | – | |
| MobiDBLite | 70 | 88 | 19 | - | – | |
| Coils | 110 | 138 | 29 | - | – | |
| MobiDBLite | 141 | 170 | 30 | - | – | |
| SUPERFAMILY | 145 | 257 | 113 | 7.25E-22 | ||
| ProSiteProfiles | 175 | 252 | 78 | 15.119 | ||
| SMART | 176 | 248 | 73 | 1.3E-19 | ||
| CDD | 177 | 248 | 72 | 4.45332E-41 | ||
| Pfam | 177 | 244 | 68 | 2.5E-13 | ||
| Gene3D | 258 | 351 | 94 | 1.5E-20 | ||
| SUPERFAMILY | 260 | 349 | 90 | 9.13E-21 | ||
| ProSiteProfiles | 269 | 345 | 77 | 13.908 | ||
| SMART | 270 | 341 | 72 | 1.1E-16 | ||
| CDD | 270 | 341 | 72 | 2.25608E-30 | ||
| Pfam | 271 | 338 | 68 | 1.1E-8 | ||
| Gene3D | 352 | 391 | 40 | 9.9E-8 | – | |
| SUPERFAMILY | 354 | 388 | 35 | 3.35E-8 | ||
| ProSiteProfiles | 368 | 385 | 18 | 9.686 | ||
| SMART | 369 | 385 | 17 | 0.0075 | ||
| MobiDBLite | 394 | 426 | 33 | - | – | |
| MobiDBLite | 395 | 426 | 32 | - | – | |
| Gene3D | 410 | 452 | 43 | 1.1E-7 | – | |
| SUPERFAMILY | 418 | 449 | 32 | 1.92E-8 | ||
| ProSiteProfiles | 429 | 446 | 18 | 9.834 | ||
| Pfam | 430 | 446 | 17 | 0.0045 | ||
| SMART | 430 | 446 | 17 | 0.0059 | ||
| MobiDBLite | 451 | 489 | 39 | - | – | |
| MobiDBLite | 456 | 471 | 16 | - | – | |
| Gene3D | 471 | 511 | 41 | 6.8E-7 | – | |
| SUPERFAMILY | 483 | 509 | 27 | 3.77E-7 | ||
| ProSiteProfiles | 489 | 506 | 18 | 9.867 | ||
| Pfam | 490 | 506 | 17 | 2.3E-4 | ||
| SMART | 490 | 506 | 17 | 0.0056 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0356800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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