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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0356900 |
| Transcript ID | LotjaGi5g1v0356900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT2G39490.1 F-box family protein; Swiss-Prot: sp|Q5S4V7|FB129_ARATH F-box protein At2g39490; TrEMBL-Plants: tr|I1NF07|I1NF07_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0356900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67157330..67160634) extracted from Lotus japonicus Gifu genome v1.2.
TGACAGGTCCATGATATGTATCCAATTCCAAGAGCTTGCTTTGAAAACTGCCTCACTTTAGGTAAAAATTAGAGTACTTC GTGTATACTTTCTTGGCAAATTATTAAATACACTATATATGATGAAATTATCAAGTCTACATGCTACTTATATTATTTAA AAGCAAGCTAAGTGCACCAGAATTAGTCTCATTTGACCATGTGTGTTATCATTTAATTTACAATTGAAGTTGTTTCAATA GCACTTTATTTAGGTACAAGTTTCACAATCTCCAATATTTACAATTGGACACGTCATGTGAGATGACTTTTTATCGTCCG CTTTTACTCTAGTCCTTAAATGATATGAGACCAGTTAAAGTAATTCCTCAAAGATGGTAATAGGTAAAATAGTCCATAAA GCATAAAAATGATCAATTTAGCTATTGAAAGATTAAAGTTATCTGCAGTGTGGTTCTTAAAGTATGAAAAAAAATATTCC ACTTTAGTCCTTAGAAGAACTAAATTGATGTATCATGTATAGTAACATCTTGTCTGAACAAATTCAGTCTCATAACATTA CATTGATATTTGATATAGCAAATGATGTCAAATACATGAGTTGGACCACATAACACAATCTAACAAGAAGAGTAAAATTT TAGACCAACAGATATAGACTGGAAGGTAGAGTCCGTGTATAAATATCTACAAGGTCCATAAACAGAGAATGACCCTCCAT TCTTCAACACCACAAAAGCTACCTAACCTTCCATTCCTCATTGTGGGGTGAGAAGCTCCATAATTACTTCTAATAAAGAA GCTCTATGTTTAGATTTTCTATTTTCTTTTCATAATTAATTCTGACACTTAGAAACTGCTCATAGAAGCTTCTTATCAGA ATTGTCTTTGTCTTAGAATCAGCTGTATTTGCTTTAAATCTCTACTGAAGCACCCCACCAAATTAGCTTGATATTGGTCC TTTTCCCTTTTTAACTGATTCATCAACTATACCCTTGCCTTTATTATGTGGGAACCATGACTTCCATTACATGATTTCAC ATTCATTTCAATTGAATGTAATTGATAGGCTAACAAATGCCATTTATTGAATTGTCACGGTTGCATCCTTTTTGTAATTC ATAAGAATGGCAGCTTGTGTCTAAAATCCATGGTGAGATATTTCTCTTTTGCTTCCTCTTGTCTGATTTGAGTGATTTCC TATATTCTTTATTCTGGCCTTGGACAACATTTTGTGAAGGTTCCATAACATTCTGTCATAAGCGCACGAGTCAGATCGTG GCTCTTAGAATTTGCATCAGAGTCTAGCGGAAATTTGCTCTATGACAGTGACTTGCCACTACACAGTAATCTCATACTCT CTTGTTTTCCTACAGAATTTACAAACATATGTTTGGTTTAGCAGTGGAAAACACCATAATCACTTATAAGCAGAAGTTTG TGTCGTGTCACCACCAATCCAAACTCGATATTATTCCATGGAAGACAGTGTAGAGGATTTGTTTAGAAATTTGCCAGATG AAATTCTAAGCTCCATAGTTTCTTTTCTGCCAAAAGAATCAGCACTAGAAACCAGTCTCATATCTATTAGGTGGAGAGAC CTTTGGAACAAAGTTCTTGTGAGACATGGAACTAGAGATGATGTCACTGGTGTTGTTGCTGGATTTCTATCCTCTTTTGA GGAGCTTGAACCATTAAAGCATCCCCACAAGCTTCAATTTCACTTTGCTGAAGACAGTTCAGTACTCTTTGCAAATATTG CAACTAACAGTAAGCTTCTTCTTGATTTCTCTGCTGTGAAGAAAGAATTTGAAAGGAGCTATGAACTTCACTTCAAGTTC AGCACTCAACAACAAATCACCAACAAGCCCAGTTTCATGGTAAAAATACTCTATTTGAAATCAGTTAGCAATTTGGCAAG TGAGGCAGTTTCCTCCATTGTTTCGAATTTGGAGCATCTTGAGAACTTGGTAATCATGGATTGCAGTGGATTGCAATCTC TGTTCATTGAGTCTGAATCAAAGCTTCACAAGTTAACCATCTTAGATTGCCTGAAGTTGAAGTCTCTCCATCTCAGAACT TCTAAGCTTAAATCTTTCAAATATCATGGACCTTTTCCTAGAATTTGGCCTGAATCTCATTTCAACTTGAGTGATGCCAC CCTTGATTTCAGACTAGGCCCATGTAGCAGTGACTTCAAGGCTCAAGATTTTAATGAAACACTATTAACAATAAAGAACT CTCAAGTTCTAACTATATGCAAATGGACTTTTGAGGTATGCTCTTTCTGTGATTTGATTAATTTCCCGTCTATTGTTGCT GGTTTTGCCTATTTATAACTCTTTGGCAGGTGAGAAGTGGTACTATGAACTCGTTTGGATGAAGACTAAAAGTCACATAA TAGATAATAGAGCTTATCTAGAGTTTTTTTAGTAGATAAGCTCCAATAAATATTCTCCGAACCCACAGTGCAAACTTAAT GCATATTTGGAAATCCTTCTACAATTAACTCTAAAGTCAAAATAAATTATGGGAAGAAGCTTTGTAAGTAGTTTTTAGGT ATCAGAATTGATTCTAAGGAAAGAGGAATTGATTCAAGAGAAATTGATTCAAATATGTCTCATTTATTTCGTAAACACAA TTTAACTCTTTTTCTTGTAGGCACTGATATGGCCATCAATTTCTCCTTCAAGTGGGAACTTCATATTCTATAAACTGAGA GAGCTATGGTGGATTGACAACCATGTGTATGAAAATAGCATTGATGCCTTAGTCTCCTTCTTGAAATTATGCCCTGCCTT GGAGCAACTTTTTGTGACAGTAGGTTTTTTACATGGTAGTAATTCATGCTCTTGTTTTGCTATGCATATTTTAAACTTTA CTGACATTTTTTTGTCACTGATTGGTTGCAGATTGATCCTAAAAGTTTTTCTACTCCACGGTCCAATTCAGGCTTAATGC AAGCAGCTAAATATACAGAACTGGAGCATCTAAAACTGATAAAGTTTGTGGGGTTTACAAATCAAGTAGATGAAATCTCA GTGGCGAAAATTTTGATTAAGGTAGTCAAGGGAAAGCCTCCAAAGATAGAGACATCAAATGGGAGTTATTTGGATGCAGT GTATATGCAGTGATTTTATTATATGTATAGAAAGGAAAATGATATGAACAAGTCATTTCCTAAGCCTGCTAGCTTGGTGT TACAGATAATTTTTTCACTTTTCTTGTTTTGTTTCTTTGGATGATTCCTTGTAGTTTACGGCAAGGAGAATTGATGATAA ATGGAAGATTGCTCACTTAGTGAAA
CDS sequence (LotjaGi5g1v0356900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACAGTGTAGAGGATTTGTTTAGAAATTTGCCAGATGAAATTCTAAGCTCCATAGTTTCTTTTCTGCCAAAAGA ATCAGCACTAGAAACCAGTCTCATATCTATTAGGTGGAGAGACCTTTGGAACAAAGTTCTTGTGAGACATGGAACTAGAG ATGATGTCACTGGTGTTGTTGCTGGATTTCTATCCTCTTTTGAGGAGCTTGAACCATTAAAGCATCCCCACAAGCTTCAA TTTCACTTTGCTGAAGACAGTTCAGTACTCTTTGCAAATATTGCAACTAACAGTAAGCTTCTTCTTGATTTCTCTGCTGT GAAGAAAGAATTTGAAAGGAGCTATGAACTTCACTTCAAGTTCAGCACTCAACAACAAATCACCAACAAGCCCAGTTTCA TGGTAAAAATACTCTATTTGAAATCAGTTAGCAATTTGGCAAGTGAGGCAGTTTCCTCCATTGTTTCGAATTTGGAGCAT CTTGAGAACTTGGTAATCATGGATTGCAGTGGATTGCAATCTCTGTTCATTGAGTCTGAATCAAAGCTTCACAAGTTAAC CATCTTAGATTGCCTGAAGTTGAAGTCTCTCCATCTCAGAACTTCTAAGCTTAAATCTTTCAAATATCATGGACCTTTTC CTAGAATTTGGCCTGAATCTCATTTCAACTTGAGTGATGCCACCCTTGATTTCAGACTAGGCCCATGTAGCAGTGACTTC AAGGCTCAAGATTTTAATGAAACACTATTAACAATAAAGAACTCTCAAGTTCTAACTATATGCAAATGGACTTTTGAGGC ACTGATATGGCCATCAATTTCTCCTTCAAGTGGGAACTTCATATTCTATAAACTGAGAGAGCTATGGTGGATTGACAACC ATGTGTATGAAAATAGCATTGATGCCTTAGTCTCCTTCTTGAAATTATGCCCTGCCTTGGAGCAACTTTTTGTGACAATT GATCCTAAAAGTTTTTCTACTCCACGGTCCAATTCAGGCTTAATGCAAGCAGCTAAATATACAGAACTGGAGCATCTAAA ACTGATAAAGTTTGTGGGGTTTACAAATCAAGTAGATGAAATCTCAGTGGCGAAAATTTTGATTAAGGTAGTCAAGGGAA AGCCTCCAAAGATAGAGACATCAAATGGGAGTTATTTGGATGCAGTGTATATGCAGTGA
Protein sequence (LotjaGi5g1v0356900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDSVEDLFRNLPDEILSSIVSFLPKESALETSLISIRWRDLWNKVLVRHGTRDDVTGVVAGFLSSFEELEPLKHPHKLQ FHFAEDSSVLFANIATNSKLLLDFSAVKKEFERSYELHFKFSTQQQITNKPSFMVKILYLKSVSNLASEAVSSIVSNLEH LENLVIMDCSGLQSLFIESESKLHKLTILDCLKLKSLHLRTSKLKSFKYHGPFPRIWPESHFNLSDATLDFRLGPCSSDF KAQDFNETLLTIKNSQVLTICKWTFEALIWPSISPSSGNFIFYKLRELWWIDNHVYENSIDALVSFLKLCPALEQLFVTI DPKSFSTPRSNSGLMQAAKYTELEHLKLIKFVGFTNQVDEISVAKILIKVVKGKPPKIETSNGSYLDAVYMQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 392 | 387 | 2.2E-138 | – | |
| Gene3D | 6 | 47 | 42 | 1.3E-5 | – | |
| PANTHER | 6 | 392 | 387 | 2.2E-138 | – | |
| ProSiteProfiles | 6 | 42 | 37 | 9.365 | ||
| SUPERFAMILY | 7 | 50 | 44 | 9.29E-9 | ||
| Gene3D | 113 | 371 | 259 | 1.0E-7 | ||
| SUPERFAMILY | 137 | 321 | 185 | 4.24E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0356900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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