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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0357800 |
Transcript ID | LotjaGi5g1v0357800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Plant protein 1589 of Uncharacterized protein function; TAIR: AT3G55240.1 Plant protein 1589 of unknown function; Swiss-Prot: sp|Q30UH5|PURA_SULDN Adenylosuccinate synthetase; TrEMBL-Plants: tr|B7FMI5|B7FMI5_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0357800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67243399..67246598) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTCTAATGGCAGTTGCACAAGACAAACAATGGTCATTTACAATCTCCTCTAATCTCTTCCCAGCCAATTATCATTTA TCTCCCACGTGATACTACTCCTTGTAGTTGTCCCACCCAAATCACCCTACCTCTCTTGCTCTATATTCCACTTTATTTTC ATTCATCTGCACTGCGTGTGTGATCATCTTCATAACATTGATTTGCACTAGCTACTTCATTCTCTCATCCTACACATCAA TACAAAATCTTGTTACCTGCACACTACTAATTAAGAGATAGCATACCTAGTTTAATTTATGTAATGGCAGCCCCATCATC ATCTTCTTCGTCATCTTCTTCCTCTTCTTCTGCTTCATACATTCATATGGTAAACCACATAATTTTTTATTTCTTTTGTG TGTGGTGACATATATTGATCATCATATATATACTCATATTTATGATGGAGTATTATTTTGCACACACTAGTATAATTAAT AATTAACTTTTACACAATATTATGTAGGTGCAGCACTTGATTGAAAAGTGTTTGATCTTTAACATGAGCAAGGAAGAATG CATGGAAGCCCTCTCTAAACACGCAAAGATCAATCCTATTATAACATCTACTGGTATGATCAATATTTTCTCTCTATAAA TTAAGAGCTAGCTATATGCATAAATAACATGCACACATGTGAGATCACATATATAATATTGCTTGGTGTGAAAATCAAGG AGATGTGAGATGATCATCGAGAAAATTGAATAACAATAGCCAGTTATATATGATGGGGCTAGAATTTGAAGCTTAGCCCT CAATTTTAATCATCATCAATAATTTGATCATGGGAATTTATATTTTGGGAGTTTACCACCCAAGCTTCTATACTAATGGC TCACTTTGAAAACTTACACGAAAGAACAATATTAGAAATTATTAAGTTAAATTATGATTTGTTTTAGTTACAGTTATCTG GTGGTACCCCCACACCATAGGTTAAAAACCTCATAAGTCTTTTGACCGAACCAATATAACAGTTTAGGATTTTAAGAGAA ATTTTAAAAAGTCGTCTACCCTATATACAACAAAACATTAGGTTCACATATCAATTACACTTAAGGGCCCGTTTGGTGAC CAGGACAGGATAGGATAAGACAGGATAATAATCATATCCTGTTGTTATCTGTTGTTTGTTGCGCCAGCAGGATATGATAA CACTATCCTGTCTCCTATCATATCCTGTCAGTCATGTGTAAAAGTTATCCTGAGGGGGAGCTAGGATAGAGCAGGATAGG ATACCAGTTATATATTTTCTTTCAGTATCCTAACTCCAAATTAATTTATTTTATTATTATATAATTTATAACTTATAATA ATATTAATTAATAAATATAAAAATATTAATTTAACTAAAATAAAAAATAAATAAAATTATTATTCATAAATAGTAAAATA GACTACTCACTTACAAATATTGATTTATTAATAATAATAGACTAATTTAATATTTTCATCTCCTATTATTTAAAAATTAT TTATCTACTTAAATAAAAATTTAAATATAAAGTTTTTTTAAAATAATAATATTTTTAATTTAGTTAATTTTTATTGTTTA TCACGTGTCACAACTAAGTGAAAAACATTGATTATAAATATTGATTTTTTTAATAGTAAAAGATTAATTTTTTATTTTCA TCTCCTATTATTTAAAACTACTTATCTACTTATATAATAATTTATAATTCAAATATAAAGTACTTTTGAAATAATAATAT TCTTAATTAAGTTAACTTTTATTGTTAATTATCACGTCTCACAACTAAGTGAAAACCAATCGGTTAACTGCATAATTTTA TTTGAAATATAGGGTATCTTCAAAACAATAAAATAGGCTAATTATTAAAATTTAAATTAATTTAATTTATAATAAAATAT ACTCATTCATGAAAATGTAAAGAAATTAAATTTAATAAAATGATCAATTTTAAATGTATTTTTTATTCAAATATAAATCT GATACATTTTTCCTTATCATATCCTGTCCTTATCATGTGCACCTCAAACACAGGATATGATAAGAGTCTATCCTGCTCTT ATCCTATCCTGTTGATATCATGTTCACATATCATATCCTATCATATCCTATCCTGACCACCAAACGGGCCCTAAATCTAG ATGAGATATGAAAAGAATATAAATAAATGTGTGATATAATAGATTATGTGATAATAAATGTATAGTGAAATATGAAGAAA ATATGTCTAAAAATGAGATACAAGAAAAAATGAGGTGTGTGTAAGGTAAAACATATTCTCACATCTATTTCTTAATTATA TATTATGGTGTATCCATCCCCAATAGAATTTACCAATATTTATCCATTACATGATGATATCCCTTATACATAGAGTAGTG ATCACACCCATGCACTTATTTTTGTTACGGTTTTAGACTAACACAAACAATGGTAAAATAAGACCACAACCGTGGGTGTA TGGGTTAGTCGATCATATAATATCTTTCAATTCTATATATCTTATTCGATGATACATATGTCGTTACGTGCATCAATAAT AAATGCAGTGTGGAATGAGTTAGAGAAGGAGAACAAGGAATTTTTTGAGCCTTACAACATGAAGTTTAAGAGTTCTAAAG ACGACATAATGTCTGAGGAAGAGACAACTCAGATGATACAAAAGATGATTTCAGAGTCAGATTCATCCTCTAAAGATGAT GTACAAGACAACTAACCAACCATTGAAAACGAACGAACGATCTTGCTAGCTATAGTTTGGATACTTTAGTCCCACACATT ATGCAACCAGCCAAAAACACAAAGGAAAGGTTCACCGCATCCTACTACCTATCACTAGTTTCAAACTAGTGTGGATGCTT AATTGTTATCACTTATCATGTAAGTAACAAAATGCCACACTGTAATTTGATCTCATAGTGTGTGCGCATGTATAAGTATA TACATATGTGTGTGTGGGAAGAAAACATCATGTTCTCATGTAATTATATAACATCATGTATGTTTAAATCAGTTCCTCTT TATGAAACTCATAAATTACTCACATATAAAATTTCTCCAAAATTTATTTTAACTGTAAAATCTATTGTAGAAGGGTTTTC AAACATGTCCTACATGCAAATGAGATAACTTACATGCTAATTAAAACAAGTCTTTAAAACAAAATTAGGTGAAATTTTTT
CDS sequence (LotjaGi5g1v0357800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCCCCATCATCATCTTCTTCGTCATCTTCTTCCTCTTCTTCTGCTTCATACATTCATATGGTGCAGCACTTGAT TGAAAAGTGTTTGATCTTTAACATGAGCAAGGAAGAATGCATGGAAGCCCTCTCTAAACACGCAAAGATCAATCCTATTA TAACATCTACTGTGTGGAATGAGTTAGAGAAGGAGAACAAGGAATTTTTTGAGCCTTACAACATGAAGTTTAAGAGTTCT AAAGACGACATAATGTCTGAGGAAGAGACAACTCAGATGATACAAAAGATGATTTCAGAGTCAGATTCATCCTCTAAAGA TGATGTACAAGACAACTAA
Protein sequence (LotjaGi5g1v0357800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAPSSSSSSSSSSSSASYIHMVQHLIEKCLIFNMSKEECMEALSKHAKINPIITSTVWNELEKENKEFFEPYNMKFKSS KDDIMSEEETTQMIQKMISESDSSSKDDVQDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 104 | 92 | 2.9E-48 | – | |
PANTHER | 13 | 104 | 92 | 2.9E-48 | ||
TIGRFAM | 20 | 76 | 57 | 9.8E-27 | ||
Pfam | 23 | 74 | 52 | 3.0E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0357800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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