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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0358400 |
| Transcript ID | LotjaGi5g1v0358400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal L29 family protein; TAIR: AT2G39390.1 Ribosomal L29 family protein; Swiss-Prot: sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35; TrEMBL-Plants: tr|I3S340|I3S340_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0358400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67305931..67308408) extracted from Lotus japonicus Gifu genome v1.2.
CTATGTTTGAACCAAGCCCACTTCACTTTTCTCCTCTGTCTAAGTTCAGTTTATAAACCAAATAGCAAAAAAAAAGCCCA GTTCAAAATCCATCTGGGCCAAACCAAAACAACACAACACAACACACTATATTATAAATAAAAACCCTAACCCTTGCTTC ATCCCTTTCATTGAGCACTAGGGTTTGTAGCGAAGAGGCGCAGCCATAGCAAGAGCTTCTGAATTCAGCAATGGGTAATC TTCAATCCAGATCATTCCCTCTCTCTCTCTCTGTGTGTGTATAGAATCGATAATCCCATTTCTGTGTGATTGAATCATGG TTTGTGTTGTTGTTGTTGTGCAGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAGAACAAGGCTGATCTGTTGAGTCAGC TGAAGGACCTCAAGGCCGAGCTCGCTTTGCTCCGTGTTGCTAAGGTCACCGGCGGTGCCCCCAACAAGCTCTCCAAGATG TAAACAATGATTCACTCTTATAGTTTTCTCTTTCTTTCGTTCTGTGTGATGTGTTTGTGTTAATAATTTGAGTGTTTGAT TGAATCATTTTGTGTTGCAGCAAGGTGGTGAGGTTGAACATTGCTCAGGTTCTGACTGTGATTTCTCAGAAGCAGAAAGC TGCTTTGAGGGAAGTTTACAAGAACAAGAAGTACTTGCCCCTTGATCTGCGCCCAAAGAAGACCAGGGCTATTCGCAGGA GGCTTACCAAGCATCAGGTAGAAATTATTGCTTTCTGTTGATTTATTCTCAAGTATTTGTATGTGCTATCTGGGTTGTTA ATAATATATCTGCTGAATGGATCATATGGCTTCTAATGTGTAGAGGGTATGCTGTGTTGAATTAATATATCCCTTGTTAA TGAATTACTGCCTTCAGATGAGGACATTTTGAGGAAATTTACCATGATTAGGATTTCTACTTAGTCCATGTTTCATGTTT GTTAACCCTTCTACAATTGATTCTGTGTTTCAGAATCAATTTTAGTGAGAAGCTTCTGTTTCAGAATCAATTTTAGTGAG AAGCTTCTATGTTTAAGAATTGTGTTTCAGAAGAAGCTCGTCCAAACATTATCAATAAGAGCTTATTTAGTGTTTTTTTC AAGCAGATAAGCTTCAATTTGCTCTAATAAGCTGGTATCCAGACAGGCCCCTTATGTCAAAGCCTTTCTGCTTCCTGAAA CAAGTTTTTCTTTTGTTCAATTTTGTTAGGAACAAACTTAACTCCTGAATTCTTCCATGATCTTGTTTTCTCGAATGGTA ACTATTGTGAGAAATGAAGGAATACTGCTGGAATGATCTGTTTTATTATTCCACCAATGATAAGTTGATCATTTTAAGAC TTTTTTCATTAGTTAGTTTCAGATTGATGTGCCTTGTAAGAAGTGAAATTCAGATTGATGTGATAATGGGGGGTGCTTTA TTAGTTTTGCTTCTTTATTTGTTGGAGCTGGACAATTTTGTTTCTTGTATAGCTAATGTGGTTTTTCATTTCTTGTTCTT GCAGGCATCATTGAAGACTGAGCGGGAGAAGAAGAAAGAGACATATTTCCCCATGAGGAAGTTTGCTATCAAGGTGTAGG ACTTTAGAGCAATCACATTTCTCTACTGGACATTTACACCATTTCTAGTTTTCAAGTTTTGAGATATCTTATTTGTAGTT TCAACTTCTCTATCAAGTTGTTGGCTATGTTAAATTTCTTGTCATCAGACCCGGGCTTTCTCCCTTGAATTTACTAGGAT TTCTGCATATTTCTGTCTTTAAAGCAGTAAATTTTCTTCTGATTGTTAGTCTGCAATTTGAAATCTGCTTAGCATTTTGC GTTAAGTTTTTGCCCTTATACTTGTCAACATTTCTTACAATGGCACAAAATAGTCCCATCCACTGAGTTTCTAGTTCATG TTTTGGTTGTATCTGCAAGAGTTCGGAATGGATTCTGCTTTTACAAAAGCCAAACGAAGTAGATTTTTTCACCATGATTT TGGTTTGGTTTCTCAATGAGTTTCCAAATTACCAGTCACAGCTTTTCCATGGTGCTTCCATTTTGGCATCTAGATCATCT TAACATCTGTTTAATACACAGGGTTGCCTGTTTAATTTTTATACCAAAAATCAATTATAAGAAACTTTTTTCATTTTCAC CCCTTCTATTAATTGCTCGTATCAGGATACAAGAAATGCAACACTTGTTTATCAATCATCTCTCAATGTTATCTAAATAT AATAAGAAGGAACTAAATTGATGTAAGAGACATGGATAATAATAATATTGCTAACTGGCCATTTTGTTGAGTAATGCTGT TTTTCTCGAAGGGCTTACACACACCTTATTTCACTATGTACAAGTAATTCCTCTTGTTTTCTTATTTTCAAGCAAGTTCC TTAAAGCTGGCTATTTTTACAGAATATAATGGTTATAAAACAAAAATTGAACTAGACTAATTAAGCCGACTAATTAAG
CDS sequence (LotjaGi5g1v0358400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGATCAAGGTTCATGAGTTGAGGCAGAAGAACAAGGCTGATCTGTTGAGTCAGCTGAAGGACCTCAAGGCCGA GCTCGCTTTGCTCCGTGTTGCTAAGGTCACCGGCGGTGCCCCCAACAAGCTCTCCAAGATCAAGGTGGTGAGGTTGAACA TTGCTCAGGTTCTGACTGTGATTTCTCAGAAGCAGAAAGCTGCTTTGAGGGAAGTTTACAAGAACAAGAAGTACTTGCCC CTTGATCTGCGCCCAAAGAAGACCAGGGCTATTCGCAGGAGGCTTACCAAGCATCAGGCATCATTGAAGACTGAGCGGGA GAAGAAGAAAGAGACATATTTCCCCATGAGGAAGTTTGCTATCAAGGTGTAG
Protein sequence (LotjaGi5g1v0358400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARIKVHELRQKNKADLLSQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREVYKNKKYLP LDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKFAIKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 77 | 77 | 1.7E-33 | ||
| PANTHER | 1 | 122 | 122 | 2.1E-79 | – | |
| PANTHER | 1 | 122 | 122 | 2.1E-79 | – | |
| SUPERFAMILY | 4 | 65 | 62 | 3.79E-16 | ||
| Hamap | 4 | 64 | 61 | 12.791 | ||
| Coils | 7 | 34 | 28 | - | – | |
| CDD | 8 | 64 | 57 | 6.33407E-11 | – | |
| TIGRFAM | 8 | 64 | 57 | 1.3E-18 | ||
| Pfam | 8 | 64 | 57 | 3.4E-17 | ||
| Gene3D | 78 | 123 | 46 | 2.8E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi5g1v0358400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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