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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0366600 |
| Transcript ID | LotjaGi5g1v0366600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | cobalt ion-binding protein; TAIR: AT5G47870.1 cobalt ion-binding protein; Swiss-Prot: sp|Q9FIJ4|RD522_ARATH DNA repair RAD52-like protein 2, chloroplastic; TrEMBL-Plants: tr|I3T4N4|I3T4N4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0366600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:68136598..68140877) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTTTATGGGATTTGAGTTGATAAAAGTGGGTGGCATTGTGTTCCCATGCTTGAAGTTGCTTAAATTGGGGATCTG GGAGTTTGGTGAGGTCGAGCCATGGCTTTAGCGGTAAGGCCTAATACAAACGCCTTCAGCAGTAAGATTATCTCGCTCTC ATCCTATGACCGAACCAAGAAAGGAAGTCTTGAACTAGGGTTTGTGAGGAGGGATTTTGGAGTAAAGGGTCGTATTGGTA CACTCTCCCTGAAGTGTTCTCTGGAGCGCAGCAGCAATAGCAATAGCAACGATGGAAAGAAAGGAGGTGTATCGAATTCG AATTATGTGGTGCCGCTGGACAATTCATTTCCTTTCTCCAACTCATCCTGCATAACTCGTCCTTTAGCCGAGATACTCCG TGACCTCAATAAAAGAATCCCCGATACTATCGTCAAAGCTCATGTTCCTGACGATCCTTCGGCTTCCACCTTTATCCCCT GGTACTTTGCCACGTTAATCTGACTTGGTGACTTGAGTTCTCTTCTTGAATTTATGAATTATGATGATCTCAAGTTATTC TATCTGTTACCGTTCTTTCATAGGTATCACGCCAACAGGATGTTGAGCTTCTATGCCCCAGGTTCATTCAATTATCCTTT TATTGTAATTCATATTATTTTCTAATTCTAATTAATTATTGGTTGCACTGTCTAATGTAGCAGGTGTAGGCATATAGGAT TAATGTCTAAATATTCTACCTATCCTCCATCACTGCAAATGTATATAGGATCCTAATACATCCGTAAAACTTTCAAATTT CAAAACACTTTTGCAGGATGGTGTGGAGAGATACGTGATGTCATCTTCTCTGACAATGGCAGTGTGACTGTGGTATACCG TCTTACTGTACGAGGATCTGATGGTGAGGTGAGCCTCTAGTATTTCTAATGCATTCACTTTCATATATTATAAGCTACTC TACTTTACTTTGTCCTATTTGTTTATTCCTTCATTTTGTGGCAATAGCAATACATCCTCTATTTTTCAGTCTTGACTTTC CAGACTTGGCCCATATGACATGGTGAACCAGCTGCCCTTTTGGATCTAAAAACTAGTTTTGGGTTCTAACAGTACAATAT AGGGTGTGTTTGGATAAACAATAAGCGCTTATTCATAAGCTACTATGAGAATGTTATTGAAATAAGCTCAAAATAGCTTA TAGGTAGGTCATAACCTATTTACATAAGCTCTCATAACCTATTTACATAAGCTCTCATAAACACTAGGTACTAAACTGAA TGAGAACTGTATTGAATTCACTGAATTTCCCAAATAGGGAAGAGCCGAGAAAAAGAAGTTACTACAAATGTAACTCTGGA AATTCGAAAGTTCTAGCTTTCCCAACTACTGTCTACTAACAACCAATTTCATAACTTCCCTCTCCTTTCACTAACTCTAA TATAGGACAGGGTAACTTCCCAGTCAGTTACAACTGGCAACTGTCCTAACTGACTCCTACTAAGGGCTGTGATTCCCGGC GGTCCTTCTCTACTTCCTCTGGTAGACCTGCACGAAAGGAGGCTTGCACCTATTAGACATGACATCACAATTGAATTGAT ATGAATATGCCAATATGGCATGACACGAATGAATGCATACTAGAATAATAACTTATACTGAGAATTATATGGCAATAAAA GTATCTTAATTGTATTTCAGTAAGTCTCTAAATCTAAAGAGATGTGAATTGTATGGTGGCAAGGAGGATTTAGCAAAGCA TGAGATATAATCATACATAATATATTCAGATTAGTTTTTTTTTTTTAAACATTGGGTTTATGAATTTTGTGAATTTCTAA TTTGTAGTTTTTTGTAGGTAGGTTATTTGTGGATTGGCTTGGTATTTCTGTTCATATTCTCCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTGCTTTTTATCAAGGTTGTCAAACTTGAGAATTTACA TGAACTTGTGGAGCATGTGTAAACTGGACTCAAGACTCAGAGTTATATACTCGTATGAGTTTACCTAATATACAAGTAAT ATTTAAAACACCTATTATAGTATCAGAACATAGTACTATATGCATACCAAATATTCAACATGATAACATCGTAATTAAGC AAACTACAATAACAAAGTTTTAGATATTCTGTAAACAGCCAATAGCTCATACCAAGATGGGTTCATAGCTCAAATACACA AAAACATTGAAATTCAAAATTGAAGGACAAATTTACAAACACAAGATAGGTTCATAATTCAATACAATGTATTGAACATA ATAAACTCTGAAATGATGGAAAAGTCCACAAATCACAAGGTTGAAAATTACTGAGGAGTGAAGGATGGAGGAACTAGGTT CATCTTGTCAGAGCTGGGTTTCCAGTTTCCACTTGTGAGAGCTAGGTTTGTTCACCTTGTCTGCCTGCTAGGTTCATTGC AAACTTTCAGCTATGGACTTGTTTGAGACTTCATTCATGTAGAGCTATCATGTTAAGACTAATTTAGCTGTGTTTACCTC CTCCTATGCACATGGGTTCATGTCCGTTGGAGGCATGCAGCTATTGAGTACTGTGATAATGTTTAATAGTTAATACACAA TGAGCCTTATCATTTAGTGACCGCGTTTTGGGTATTGTTAAAAACAGTTAAAATAATCATTCTTTGCGGTTCCTCAAACT CACAATCCTGTGTAAGCCTACAAGTTTTCCCAGAAATGTGGTATTAACTGGATTTTGATAACAATGCTCTTTATTGCTCT ACTCCTGTCTTCAATCACAAATTTTCATATTCTGTGATGAGAATATAAGGGTGATTATTATCTCTTTTTATTGTTATCTT TGCATTTTTGGCAATTAAAGGAATTTAGCTGAACAGTAAAGAAGTAAAAGAAACCTAGTCATCACATCAAAAGCCCCTTA GGCATGACATGAAGGTTTAACCTGCAACACGGCGCTATTTAATTACAGAAATATTAATACCAGTATACCACAAACCCCAA GTCCAAATGCTGCTCAAGACCATGAAACATAAAAATTACTGAAACACTATAATTTAAATTATAAAACGAACTATACAATA CCTTCCTTTTCCTGAATGTCCATTATTGTACCAAATATGACCTTTGAAATATTATAAATTATAATGACCTGCATAATTAT TAGAAAGGAATTTGAAGCAATTTATTGGTAAACTTGGGTTCCTTAATACTAATTCGTTGTGTTTGGCAGGTAGTTTTGCT CCCTTTGAGTAGAACTGAAAATTTTCTATGCCATTAGCTTCTTAAAACATCTGAAGTGCCTAACCAGCAACCACTGTCAT TTTCTCTCTTGATAACAGGCATATCGTGAGTCAACTGGGACAATTTCACCTAATGATGGCTCCACTGTTGATCCAGTTTC AGCCGCCGAGGAAGTCGCTTTCTGCAAAGCTTGTGCCCGGTTTGGTCTCGGCTTGTATTTGTATCATGAAGATCAAATGA CCAGTACTTAAGCTTCCAAATCTTAGTTGGCTTGTTATGATGTTCTATTGGTTTCTTCTCATTGATGTGAATAGAAGTAG ACAATATGCGGCTGTTAGTTACTCATCCAGTACTGTCAAGTATTGGGAAAAACTAGAAACCATATCTTTGTTTTGTACGA ATTCGAATGCTTTATGCGAAAGTACATTTTTCTGTATTACTTGGGTACATTTTTGGTGTTGTCTAACGCAAAGCACCTTG CAAGTGTTGTATTCATATAGCACCTATATCAACCGCTCGATATAATAGTACTTTAAACAAGGGTTTTGATCTATTACCAG TTACTGGTTTGAATTAAAGTTATTTTAAGTTATGAAATTTCAGTTCCCCGCACTTCTTTTTTCTATTTTTATTTTTACCC TATGAATTCACATATTTCTTTCTGCTGGCCCAGCTCCCCTTTGATTTTCAAGATCCATTGGTGGCTGCTGTGGTGCTGTT GTTTTTGTCGTACATTGCTGTCTCTCGCCGTTCCCCTTTGTTTTCTTTGCATCGTTTGGTTTCATCACCATTTTCGGTCT CACCGTCAGTGGTTGATCTTGTCAGCCCAGCTTTTGCCTTGCTCTCCTCCTTATTTTTGCGTCACAGATCTGGTCAAGAT CTTCAATCATACAAATCTCTCATCATAATTGCAAGAGAACGTTGGAAAAATGAGAACACAAGAAAAAGCTCCCAATCTCC CTCTTTCTTTGTGCGACGTTGTCATTCATTTGGGGAGGGG
CDS sequence (LotjaGi5g1v0366600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTAGCGGTAAGGCCTAATACAAACGCCTTCAGCAGTAAGATTATCTCGCTCTCATCCTATGACCGAACCAAGAA AGGAAGTCTTGAACTAGGGTTTGTGAGGAGGGATTTTGGAGTAAAGGGTCGTATTGGTACACTCTCCCTGAAGTGTTCTC TGGAGCGCAGCAGCAATAGCAATAGCAACGATGGAAAGAAAGGAGGTGTATCGAATTCGAATTATGTGGTGCCGCTGGAC AATTCATTTCCTTTCTCCAACTCATCCTGCATAACTCGTCCTTTAGCCGAGATACTCCGTGACCTCAATAAAAGAATCCC CGATACTATCGTCAAAGCTCATGTTCCTGACGATCCTTCGGCTTCCACCTTTATCCCCTGGTATCACGCCAACAGGATGT TGAGCTTCTATGCCCCAGGATGGTGTGGAGAGATACGTGATGTCATCTTCTCTGACAATGGCAGTGTGACTGTGGTATAC CGTCTTACTGTACGAGGATCTGATGGTGAGGCATATCGTGAGTCAACTGGGACAATTTCACCTAATGATGGCTCCACTGT TGATCCAGTTTCAGCCGCCGAGGAAGTCGCTTTCTGCAAAGCTTGTGCCCGGTTTGGTCTCGGCTTGTATTTGTATCATG AAGATCAAATGACCAGTACTTAA
Protein sequence (LotjaGi5g1v0366600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALAVRPNTNAFSSKIISLSSYDRTKKGSLELGFVRRDFGVKGRIGTLSLKCSLERSSNSNSNDGKKGGVSNSNYVVPLD NSFPFSNSSCITRPLAEILRDLNKRIPDTIVKAHVPDDPSASTFIPWYHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVY RLTVRGSDGEAYRESTGTISPNDGSTVDPVSAAEEVAFCKACARFGLGLYLYHEDQMTST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 215 | 178 | 9.0E-90 | – | |
| PANTHER | 38 | 215 | 178 | 9.0E-90 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Double-strand break repair via homologous recombination | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0366600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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