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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0000300 |
| Transcript ID | LotjaGi6g1v0000300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sieve element occlusion protein; TAIR: AT3G01680.1 sieve element occlusion amino-terminus protein; Swiss-Prot: sp|Q9SS87|SEOB_ARATH Protein SIEVE ELEMENT OCCLUSION B; TrEMBL-Plants: tr|E2FKJ2|E2FKJ2_MEDTR Sieve element occlusion by forisomes 3; Found in the gene: LotjaGi6g1v0000300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:124613..128829) extracted from Lotus japonicus Gifu genome v1.2.
AAGGTAACATTTGCACCAAAATCAAAACTTGAGACATATCTCCAGAGTCTAGAATGACTAACATGTCGTCAATGTCAGTT TCAGTCCCCAATATGTCTAATTTTCAGCCAACGAAGGCTTGGAGGCCGTTAGCTTGGACTGATGAGAAGATCCTGGAGAA AGTTTACGTAACCCACGTCCTCACCGCTGAGAAGCACGATGTGGAATCGCTTTTCAATGTTACTTCAAACATTATCAGGC GTTCCGCCGCAGTTGCTGACAGTGTTACAGGCACAGCTAAGGTAAGAAAACCGTTTAAGTACAACCATTTGTTTTAAGAA AAATACTTAATGGAAGAAGTGGTAGTTATATATCATCCCCTATCTCATGATTTCCGCCAAATAATATATTCAGCATTTAA CTTCAACATTTCTTGCAGCTTTCCTTCATAACATATAATGTTGGTGTTGTTTTAATTTGCAGACTAGTACACCTGTTGGT CTTATAGAAGACAAGGCTCCCTTACCCAATTTTGATCCACCGCTCCGTAAACTGAAGCAAATTGCTTCTCAGGTTATCTA GCTAGCCGCGTATATACTTTGTTATCGGATTTGCCACTTCCACCTTTCTTTGCATGGAAACTCATGAATTTGAGAAATTT ATAGTTTCATGAAATTAAATTTGTAACTTACCCAAATTGAAGTTTTAAGGAAGTAAGTAACTAATCCTCCATATGGTTAC AAAATTCCACACATGCTATAGTGGCACATTCCGTGTGTTTATAGTGATTGATGATTATTCCAATCGTGCGGACATCCATT CGACACAACAGAGCTATCAAAATACATTTCGCAAATTTGTTTCTGAAATCTATTTTTATATCTAGAACTGCCACAAATTG CCAGAAAAAAAAGAATTGCACTCCAGAAATTAGTTTCACAATGCATTTCTGTAGCTTTACACATTATTGGAGGTTTCAGT TAGCCACAAATTGCTTGTATCGAATGGATATGTCGCGTACCGTGTGTGTCTATGGGGGACCCTTTTAACTATGTGAAACT TTTACGATGGCTTTTGTGAAAATAATTTATTGATTTTGCGATTGTAGATGATGAACACACCTCAGGGTGAGCATCATGCT CATGAGACAACAATGTCGATACTGGAACAGCTTAAAAGCCATAGTTGGGATGGAAAAGCAATATTTGCTCTGGCTGCTTT TGCTTTGGAATATGGGAATTTCTGGCACCTTGTCCAGGTTCCTAGTGGAGATCAACTTGGAAGATCATTAGCACAGATGA ATCGAGTTCAAACCATCGAAAGGAATAGGCAAGCTATTGCTGATCATAATACTTTGGTCAAGAACGTGTTGTTGGTCGTT GAGTGTATCACTGAGCTGGAGAGGCTGTTCGCCAAAGTTTATGACACAAAGGATGTGCCAGCATTGACAGAAGCCATGCA AGAGATCCCTGTTGCTGTCTACTGGGCAATCATCACCACTGTAGTTTGTGCTAATCATCTTGATCTCCTCACCGGTGGTG ATTCGTAAGTTCTCACTCTTGTCTAAACTACTAGCTAGTATGTTTAATTGAATCAGCTTCTGTTTCATTAAAATAATTTA CAAATTCAGAAATTTTTCTTTGAGTCTTCCTTTTTCTCTGAGTGCCTGTCGCACTTTATATAACTCATATGGCTTTCGTT CAGGGAGGACAGATATGAAATATCAAATTTTGATGTCAAGCTTGCCTCCGTTATCACAAAATTAAAGGGGCATCTCACGA GGAGCAGAAAGAAAATAGGTTGTGTTCAGAGATTCTTTCCTTTTATCTCTCTGTTTTTTTTTTCTAGTTGTGAGACATCA TTGAATTATCAATCACATAAATATAATGCTGACAACACATTGTATCTGCTTATTGCAGCTGAACTAGAAGATTACAGGAG ACGTCAGAAGGTCTTTCAAACTCCAACAGAAATTGTAGAGGTTTTGAAGGTTCTGATCTTCCACAATGAAATTCAGGACC CAATGGTGTTTGATGGCTTGAATAGACAAATGGTATTAAAGTGTTTATGCTGCACCATGCATGACCATTATATTTATGGC TTTTGGGGCAGATACAAACTTACATGATATTTGTAACTGACATGTCACAATTTTATTGGTAGGAGATTAAATTGATACAA CATTAAAAGACAGAATATTTCAGTTCAATTTTAACATGATTCACAATCGAATTGTTCATTTTCTTGTTTTCTAGCTATCA TCTGTGTTCGGTTCAATTGAAAATCTGACTATATAGGCCCTCACTTCCTTTTAATTGTTTGAACCCAAACAGGTTAGCAT CGAAGTGTTCAGGAAGAAGAATGTTTTATTGTTCATTTCAGGCCTCGACAGCATCAGAGATGAGATCCGGCTCCTACAAT CTATCTATTTCGGATTGCAAGAAGATCCTCAAGACGTGAAAGGTTACAGGAAAGCTGATTTTAAGATTTTGTGGGTCCCC ATCGTGGATGAGTGGAACCTTTTTCACAAGGCAGAATTTGATAATCTGAAGCTTGAAATGCCATGGTATGTGGTTGAGTA CTTCTATCCCTTAGCAGGAATCAGATTGATAAGAGAGTACATGAACTATCAGAATAAGCCTATCATCCCTGTGTTGAACC CTCGAGGAGAGGTGGTAAACTATAATGCAATGCACATGATTTTCGTATGGGGGATCGATGCCTTCCCTTTCAGGCCCACT GATGATGAGGTACTTACTCAGAAATGGAATTGGTTTTGGGCCGAAATGAAGAAAGTGAATCCAAAATTACAAGACATTGT AAGTACAGATACACTTGCTTTCAATTTCAAAAGGAATCATGTGCAGAAACACAATACACATTTTGACCTTAGTTAGCAAG CAATGGATCAGTTGAGTTAGGCCTGTTTGGTCTGAGCTTGCTAATCTAGTTGATTGTTGTGTGTATTAGTTGATAATTAT TGGTTTTGGTTTTGGATCATAAGCGGTGAGATCATTTGAGTTATAATACCACTTGTTTGATTTGGAAGTGCTGACCCAAA ATATACATGTAGTTTTGAGGGAGTGTGTTATGCATAGTTGTGGGTTTGGAGTGTGGTTCAAAATTAAAACCCCTTTTAGT TTCAAGTTTCAACAATGTGGCTGACTCAAATATGTCAATCATTCAACATAGATTTTTCCGATTAGAAAAATACATTATTT ACTTGAACCGTGTCAATCAAAATAAAGTTTTGTTCAAATGTGTATGTGAATGCAGATTAAAGGGGATACTTTCTTCTTCA TCTATGGAGGCAAGGACAATCAATGGATGCAAGAGTTCACGGTGGCAGTGGAGAAATTCAAAAGGCACGAGTTTATCAAG AAAGCAGATGCCATCATAGAGCACTATCCATTTGGAAAAGAGGATCACAGGATCGTTCCTCGCTTCTGGATTGGCATAGA GAGCTTGTTCGCGAACATGATCTTGAAGAAGAAAAAAGATCCCACGATCGAAGAGATAAAGAGCTTGCTCTGCCTCAAAC AAGACCAACCAGGATGGGTTCTTCTTAGTAAAGGTTCAAACGTGAAGCTTCTGGGTCGTGGTGACGAGATGTTGGCAACT GCAGTGGATTTTGAGCTATGGAAAGATAAAGTGTTGGAGAGAGCAGGGTTTGATGTAGCTTTCAAAGAATACTATGAGCG CAAGCGGAGAGATTTTCCAACACAGTGTGCGCATATGCAATTGGCTAACTATCCTTCGAATATTCTTGACCCGATTAATT GCCCAGATCAAACATGTGGGCGATCTATGGAGATTGAATCTGTTAGTTACAAATGCTGCCATGGTCACAGCCACAAAGCT GAAGTTCCTGCAGAGAGTGGTGTTGTTAAGATTGAGAAAAAGTACTCTCCCTGAGTTTGGTTAACTTGGAGTTTGCCTGG AGTAACTAAAATGTTTGGCATTAGTTTGTGTGCACCGTTATATTTTTATTTTTATTTCGCGTGTCAGTTCAGTCATGGCT TCTTGGGGTTGTTCAGAATAATGGCATCAAACATCTGTAATCTGTTACATGCTATTGAGTTCAATAAATTAGAAAGAAAC GAGTTCAATTATCCTTGCACAAATCAAACAATTCTAGTTTTTCCTTCTTTGATTACTTATTAGTTATTAGGGTTAAATAT GTTTTTGTCTCTAATTATAAGCTCGAATATGAAATGGTTGCTGAAAAAATTTGTTTC
CDS sequence (LotjaGi6g1v0000300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAACATGTCGTCAATGTCAGTTTCAGTCCCCAATATGTCTAATTTTCAGCCAACGAAGGCTTGGAGGCCGTTAGC TTGGACTGATGAGAAGATCCTGGAGAAAGTTTACGTAACCCACGTCCTCACCGCTGAGAAGCACGATGTGGAATCGCTTT TCAATGTTACTTCAAACATTATCAGGCGTTCCGCCGCAGTTGCTGACAGTGTTACAGGCACAGCTAAGACTAGTACACCT GTTGGTCTTATAGAAGACAAGGCTCCCTTACCCAATTTTGATCCACCGCTCCGTAAACTGAAGCAAATTGCTTCTCAGAT GATGAACACACCTCAGGGTGAGCATCATGCTCATGAGACAACAATGTCGATACTGGAACAGCTTAAAAGCCATAGTTGGG ATGGAAAAGCAATATTTGCTCTGGCTGCTTTTGCTTTGGAATATGGGAATTTCTGGCACCTTGTCCAGGTTCCTAGTGGA GATCAACTTGGAAGATCATTAGCACAGATGAATCGAGTTCAAACCATCGAAAGGAATAGGCAAGCTATTGCTGATCATAA TACTTTGGTCAAGAACGTGTTGTTGGTCGTTGAGTGTATCACTGAGCTGGAGAGGCTGTTCGCCAAAGTTTATGACACAA AGGATGTGCCAGCATTGACAGAAGCCATGCAAGAGATCCCTGTTGCTGTCTACTGGGCAATCATCACCACTGTAGTTTGT GCTAATCATCTTGATCTCCTCACCGGTGGTGATTCGGAGGACAGATATGAAATATCAAATTTTGATGTCAAGCTTGCCTC CGTTATCACAAAATTAAAGGGGCATCTCACGAGGAGCAGAAAGAAAATAGCTGAACTAGAAGATTACAGGAGACGTCAGA AGGTCTTTCAAACTCCAACAGAAATTGTAGAGGTTTTGAAGGTTCTGATCTTCCACAATGAAATTCAGGACCCAATGGTG TTTGATGGCTTGAATAGACAAATGGTTAGCATCGAAGTGTTCAGGAAGAAGAATGTTTTATTGTTCATTTCAGGCCTCGA CAGCATCAGAGATGAGATCCGGCTCCTACAATCTATCTATTTCGGATTGCAAGAAGATCCTCAAGACGTGAAAGGTTACA GGAAAGCTGATTTTAAGATTTTGTGGGTCCCCATCGTGGATGAGTGGAACCTTTTTCACAAGGCAGAATTTGATAATCTG AAGCTTGAAATGCCATGGTATGTGGTTGAGTACTTCTATCCCTTAGCAGGAATCAGATTGATAAGAGAGTACATGAACTA TCAGAATAAGCCTATCATCCCTGTGTTGAACCCTCGAGGAGAGGTGGTAAACTATAATGCAATGCACATGATTTTCGTAT GGGGGATCGATGCCTTCCCTTTCAGGCCCACTGATGATGAGGTACTTACTCAGAAATGGAATTGGTTTTGGGCCGAAATG AAGAAAGTGAATCCAAAATTACAAGACATTATTAAAGGGGATACTTTCTTCTTCATCTATGGAGGCAAGGACAATCAATG GATGCAAGAGTTCACGGTGGCAGTGGAGAAATTCAAAAGGCACGAGTTTATCAAGAAAGCAGATGCCATCATAGAGCACT ATCCATTTGGAAAAGAGGATCACAGGATCGTTCCTCGCTTCTGGATTGGCATAGAGAGCTTGTTCGCGAACATGATCTTG AAGAAGAAAAAAGATCCCACGATCGAAGAGATAAAGAGCTTGCTCTGCCTCAAACAAGACCAACCAGGATGGGTTCTTCT TAGTAAAGGTTCAAACGTGAAGCTTCTGGGTCGTGGTGACGAGATGTTGGCAACTGCAGTGGATTTTGAGCTATGGAAAG ATAAAGTGTTGGAGAGAGCAGGGTTTGATGTAGCTTTCAAAGAATACTATGAGCGCAAGCGGAGAGATTTTCCAACACAG TGTGCGCATATGCAATTGGCTAACTATCCTTCGAATATTCTTGACCCGATTAATTGCCCAGATCAAACATGTGGGCGATC TATGGAGATTGAATCTGTTAGTTACAAATGCTGCCATGGTCACAGCCACAAAGCTGAAGTTCCTGCAGAGAGTGGTGTTG TTAAGATTGAGAAAAAGTACTCTCCCTGA
Protein sequence (LotjaGi6g1v0000300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNMSSMSVSVPNMSNFQPTKAWRPLAWTDEKILEKVYVTHVLTAEKHDVESLFNVTSNIIRRSAAVADSVTGTAKTSTP VGLIEDKAPLPNFDPPLRKLKQIASQMMNTPQGEHHAHETTMSILEQLKSHSWDGKAIFALAAFALEYGNFWHLVQVPSG DQLGRSLAQMNRVQTIERNRQAIADHNTLVKNVLLVVECITELERLFAKVYDTKDVPALTEAMQEIPVAVYWAIITTVVC ANHLDLLTGGDSEDRYEISNFDVKLASVITKLKGHLTRSRKKIAELEDYRRRQKVFQTPTEIVEVLKVLIFHNEIQDPMV FDGLNRQMVSIEVFRKKNVLLFISGLDSIRDEIRLLQSIYFGLQEDPQDVKGYRKADFKILWVPIVDEWNLFHKAEFDNL KLEMPWYVVEYFYPLAGIRLIREYMNYQNKPIIPVLNPRGEVVNYNAMHMIFVWGIDAFPFRPTDDEVLTQKWNWFWAEM KKVNPKLQDIIKGDTFFFIYGGKDNQWMQEFTVAVEKFKRHEFIKKADAIIEHYPFGKEDHRIVPRFWIGIESLFANMIL KKKKDPTIEEIKSLLCLKQDQPGWVLLSKGSNVKLLGRGDEMLATAVDFELWKDKVLERAGFDVAFKEYYERKRRDFPTQ CAHMQLANYPSNILDPINCPDQTCGRSMEIESVSYKCCHGHSHKAEVPAESGVVKIEKKYSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 683 | 665 | 0.0 | – | |
| PANTHER | 19 | 683 | 665 | 0.0 | ||
| Pfam | 29 | 299 | 271 | 1.2E-72 | ||
| Pfam | 482 | 679 | 198 | 1.7E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Phloem development | The formation of the principal food-conducting tissue of a vascular plant. |
Expression pattern of LotjaGi6g1v0000300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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