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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0001700 |
| Transcript ID | LotjaGi6g1v0001700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin; TAIR: AT3G22930.1 calmodulin-like 11; Swiss-Prot: sp|P27164|CALM3_PETHY Calmodulin-related protein; TrEMBL-Plants: tr|I3SSE8|I3SSE8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0001700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:509428..511317) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATCTTTGATACTTGATAGGGTGCATTACTGTGGAAGAATTAGCCACAGTTATCCGTTCATTGGATCAGAACCCAAC AGAAGAAGAGCTCCAAGATATGATAAACGAGGTCGATGCAGATGGCAATGGAACCATAGAGTTCGTTGAGTTTTTGAACT TAATGGCCAAGAAAATGAAGGTAATTAAATTGTGTTCTTTAATTATTCTACTTTTTATTTCTGAAATTAAGTTCCGAAGC ATGAATATGCATGTTTACCAATGTCCCTCTAATTAATTTCTGTATTTTCTCTCAATCAGGAAACTGATGCAGAGGATGAC CTGAAAGAGGCTTTCAAGGTTTTTGACAAAGATCAAAATGGCTATATTTCTGCTAGTGAGGTATGTAAATTTTGTTCCTC TGTTCAGGTTCTGATGTAAGTTTCATTTTTTCATGGCAATGTCAATTATAATAGGCTTAATTACAACTTTGGTCTCCGAC GTTTACCAATGCCACGATTTTGGTTCCCCACCTAATTTAATTACATAGATGGTCCCCGACGTTGTAGGCTGCGTGCAACG TTAGTCCTACCGTTTATTTCTTAATGGAGGAGGCTTACGTGGACGTCTAGTTGGAGAGAAAAAGGAGATCTGAGGAGAGA GGGGAGCACGTGAGTATCACGTGAACCTTATATGAACCCATTATACCCAAATCTGAAACCCTAGGGATCTAAATCGCGTT ACCTTCTTCGTTCCAGGGAGGTCAGAGGTTTGGGTATAATGGGTTCAGATAAGGGTCACGTGATACTCACGTGCTTCCCT CTCTCCTCATACCTCCTTTCTCTCTCCAACTGGACGTCCACGTAAGCCTCCTCCATTAAGAAATAAACGGTAGGACTAAC GTTGCACACGGCCTACAACGTCGAGGACCATCCATGTAATTAAATTAGGTAGGGGACCAAAATCGTGGCATTGGTAAACG TCGGGAACCAAAGTTGCAATTAAGCCATTATAATATTCACCCTTTCTAACAATTTTGACAAAGGGGGAGCTCACACTTTC TAATGGTTCATTTAACTTGTAGACTAAGTAACAGAGTCCCGGTTATTTTATTTTTAACAAATTAATTTCCTTCTTCAATT GCGCCCCTTACTTATTCACTTTTTCCTTGATTTTTTGTTGGGTTGTTTAAATCACCCGAAAAATGTCGCTCAACTCTTTG GTGAGCAAATAATATTTTAACATGTGTTATGAGCTGAAATTTTCTAATTCACATATTAAACTATTATTAAATCATTTAAA TTAAGGTAATTTTATTCCGTATTTACATAGAATTATTTGACAATTCATACACACGCATGCAGTTATTGGCTGCTTCTTCC ATATTTCAATTCCTAATTTCAAAATTGTGAATCATTAAGTTTTTCTATATTTTAAAATTTAATTTTGATTATTTATTGTT TACTCCTTCCCTTCTATTATTCGTCATGACTTCTCGTAATACCTTATGATGCACGAGATCACAAATGGGTTGGTTTTAAC TTAAGAAACATACACATATGTGTATCTGAAAAAATTAGTACATTAATTTCACATGTACACCATCTAGGACAGTACTTTGT ACTTCTCCGCAACCAATGGATAACAGCTGTTTGATATAAAAAATGGCTTGGGGTTTGACATAAGATTTTCAGTTAATCAG TTCTACTCTATTAATTAATATATATGCACATGATTCGTACAAATATAATTAAATTCTTTCTGTGCTATGCAGTTGAGACA CGTAATGATAAATCTTGGTGAAAAACTAACTGATGAGGAGGTGGATCAGATGATTCAAGAAGCAGATTTGGATGGTGATG GTCAAGTTAACTATGAAGAATTCGTTAAGATGATGATTACCATTGGATGA
CDS sequence (LotjaGi6g1v0001700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAACGAGGTCGATGCAGATGGCAATGGAACCATAGAGTTCGTTGAGTTTTTGAACTTAATGGCCAAGAAAATGAA GGAAACTGATGCAGAGGATGACCTGAAAGAGGCTTTCAAGGTTTTTGACAAAGATCAAAATGGCTATATTTCTGCTAGTG AGTTGAGACACGTAATGATAAATCTTGGTGAAAAACTAACTGATGAGGAGGTGGATCAGATGATTCAAGAAGCAGATTTG GATGGTGATGGTCAAGTTAACTATGAAGAATTCGTTAAGATGATGATTACCATTGGATGA
Protein sequence (LotjaGi6g1v0001700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINEVDADGNGTIEFVEFLNLMAKKMKETDAEDDLKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIQEADL DGDGQVNYEEFVKMMITIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 99 | 99 | 1.6E-59 | – | |
| Pfam | 1 | 24 | 24 | 3.8E-6 | ||
| ProSiteProfiles | 1 | 28 | 28 | 11.808 | ||
| CDD | 1 | 59 | 59 | 1.04575E-8 | ||
| SUPERFAMILY | 1 | 96 | 96 | 1.41E-36 | ||
| Gene3D | 1 | 59 | 59 | 2.1E-29 | – | |
| PANTHER | 1 | 99 | 99 | 1.6E-59 | – | |
| SMART | 1 | 25 | 25 | 0.34 | ||
| ProSitePatterns | 6 | 18 | 13 | - | ||
| ProSiteProfiles | 30 | 65 | 36 | 16.829 | ||
| Pfam | 33 | 95 | 63 | 9.7E-19 | ||
| SMART | 34 | 62 | 29 | 3.5E-7 | ||
| CDD | 34 | 95 | 62 | 5.05075E-22 | ||
| ProSitePatterns | 43 | 55 | 13 | - | ||
| Gene3D | 60 | 95 | 36 | 3.4E-16 | – | |
| ProSiteProfiles | 66 | 99 | 34 | 15.35 | ||
| SMART | 70 | 98 | 29 | 5.1E-8 | ||
| ProSitePatterns | 79 | 91 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0001700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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