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LotjaGi6g1v0002300.1

Overview

Field Value
Gene ID LotjaGi6g1v0002300
Transcript ID LotjaGi6g1v0002300.1
Lotus japonicus genome version Gifu v1.2
Description Stem-specific protein TSJT1; TAIR: AT5G43830.1 aluminum induced protein with YGL and LRDR motifs; Swiss-Prot: sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1; TrEMBL-Plants: tr|I3SFA9|I3SFA9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0002300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:590384..595701) extracted from Lotus japonicus Gifu genome v1.2.

AAGCCTCATCATTATCAATACTAATTACTAGTAATTAATAATTGGTTTCCTTCTACAGTTTCACACTGCACCAATCTCTA TCTGTTAAAAAGAAAACACAAAAAGTCTTCCATTCCTTGCTTTCAGTTCTGTGTTCTGCTGTGTTGTGTTGTGAGGATCA ATTCAACAACTCAGAAACCAAAAGATCAAAACAAAGAAATCCAAAGATGCTTGCTGTTTTTGGCAAATCTGTAGCCAAGA GTCCAGAGGGTCTGCAGAGTCCTCAATCCAGCTCTGTTTCAGCAATCAAAGATGGGTTTTTGGCCAAACACTTCACCTCT GTTTACCCTTCTTCTGTCACCCTCAATCTTGTCCCTTCGGCTCTCTTGGCATATTCCATTGATAAACATAATCCACTGCT CCCAAGGTATTCGAATATACTACATGTTACTGGATCCTTTGTTGTTGTTCACATTGTCTCATTTTGTTATTTCATACCTC TGACTTTAATGTTTTTTTTTTCTTTCGATCTGGGCACCTTTGAAGAGATCAAAGTTGGAGCCTTTTGTTTTAGTGGATAA ACCCCAAGTGTTCTGATTTTGTTACTTCATTCTCATTTTTATTATTATTATATTATTTGGGGTAATTATGATTTGTGGAG ATAAAAGCTTATGTTTTGATAATCGCACTTGTTGGGACATGGGATAATTACCCTGTATGAACCTTATTGGAATTTTCCTT GACCATGCCTCAGTGATTGTGGATTGTCCACTTTTATGACATAAAACTCTTGGATTTAATGATAAGTTTCCAGAACTGCT AGTGTTTTGATATGCACACTTGATACTTGTATTTGTTAATAGCGTTTTGTCATTTTGCTCATGCTTCTTTTGTTAGGTTG TGCATATTAGCATATGCTTATGCTTTGTGTTGTTTCGGGGTCAATGACAGAAAAAATATTTAGCATATCATATATAAAAT CCAATAGGTTGTTCTCCTTTAAGGTTGTCACAGTGGGTGGTAAAAATCATATATCTCTTCTATTGTTTTTTCGTAGATCT TAACCAATTATATATAGTTTTTTTTTTCACTTGTCAATTCAGTACATGTAACATGTAATCTTTTGCAGATCCTCTAATAA TCTATCTAGTATGTCTTATCTATTGCTTCTTGTACTGTAATTTAATCAGATTGAAAACATTATTGTGATACTTTGATTAA AACTTGCCTAATATCTCCTTTCTAATGTTACACCTAATTTTGTCCTTCACTCTCTTTGATCTGTTGGCAAATGCTTTATT ACCAAAATCACCATGGATGGAAGTTTCTCCTTTCCGGACAAAACTTATCTGCAGGACAGTACAAAATGTTTTTGCTGTTG CCCAATGAAAAACTCAGTCACTCACTTTCTTAATATTTTAAGTAAAAACATGTAAAGAACTGTATCTAACTTTTTTCTGG AAAGTGTTTCTATAGAAGGTTAATTAATTCTATTTGTTTTTCTTGTATCATCTTTGCTAGGCTATTTGCAGTGGTGGATG ACATCTTCTGCTTGTTTCAAGGCCACATTGACAATGTTGCTCATCTTAAGCAGCAATACGGATTGAACAAAACAGCAAAT GAGGTGATCATTGTCATAGAGGCTTACAGGACACTACGAGATCGAGGTCCCTACCCTGCTGATCAGGTTGTGAGAGATTT CCAAGGCAAATTTGCATTTATCCTGTTTGACAGCAGTTCTAAAACTGCCTTTGTTGCTTCTGTGAGTATTAATCCAGGGC CTAACTTTGTCTTCTCTGTCATATTTACCAATAATTTTTCTGCTCTGACCTGATATACTATGTTGGTTCTTTCCAGGATT CTGATGGGAGTGTTCCCTTCTTTTGGGGAACTGATGCTGATGGAAATCTTGTTCTTTCAGATGAGACGGGGATTGTAAGT AAGAGCTGTGGGAAATCTTTCGCTCCATTCCCTAAAGGTAATTAAATAATTTATTGTATGTTTGGAAATACTTTCACAAT TGTGTCTAAAGCCATGCTCAATTTCAGGGAGAAGCTTCTTTGAATAGTTTTTGAGTTCTAGAAATTTTCTGAGGAAATAG AAGCTGATCCGAACATGCTATTACTTACCTCCTAAAAGAATGTGGTAAAGTAGATGAACATCTTTAGAAACCTCACTTTT AAACGATATGATGTGAGCATAAGCATATTACAGGTGATTAGGAGCAAAAGAAGGAATAATGACTTAGATTGCTTAGAAAT GGGAAATAAGGGACATTAACACAATTTTTTTGTAAGATTGTTCAGAGGTCTCTCATTGACTAAAGACATAGTTAAATAAG TCGTTATAAAGGGTAGAGAAATCATCAACCCTAAGCTAGCTTCTGGAGTAGAGTTAGACCTAACATAAATTCTAATAAAG ATGTGCAACGAATCAAATTTTAGTGTTCCCCAACAAACTTCATGGTCAAGTTTCAAGTGTTTCTCAAGGTTTACAATTAT GAATTATCCTGCTGATTTCAAGTTCTGTGTATTGATTTATCGCTATGAATGCTTCCTCCATACATTACTTTTGCATTCAA ATTATTTGCTTAAATGGTTTGATTCAAGAAGTAATGATGAGTTGGATGGCTTATAAATGGGACATAGGGGACTTTGACTT CAATTTTTGTATGATGTGCAACAAATCAAATTTTACTGTTTCCCAACAAACTCCATGAAAGTGCATGTCTGGAATCCTGC TACAATTGATTTTGCACCCAAAATCAATTTTGTCAAGAAGCTTGTGTGTGCAGCCTCTGGGTATCAGCATTGACTCTAAG GAAAGAAAAGCTGACCCAAACATGCTACAAATTTCAAGTGTTTCTTATGCAATTATCCTGCTGATTTCAAGTTCCCCATG CTCTGTATTGATTGATCATTATGAATGCTTCTTCCATACTGAACATGTGCTTTCAAATTGTTTTCCTCAAATGGTTTGAT TCAAGAAATAACATGCATGTTCAGGATGCTTCTTTACAACATCTGGTGGTCTGAGGAACTTCGAGCATCCGCTTAATGAG TTGAAGCCGGTACCGAGGGTTGACAGTTCTGGTCAGGTGTGTGGTGCAACTTTCAAGGTGGATGCTGAAACTAAGAAGGA AACAACTGGCATGCCAAGAGTTGGGAGTGCTGCTAACTGGTCTTCTAATTACTGATTGCAGCTCTATTTTGTTTGAACTA CTAAGGCTTTTATAAATCTGTATTTAGTTGAATTTTCCAGCTTTATGCATCATCTGATCCCATTTACAAGTTGCTTGCAA TCAAATATTAAACTGATAATCTTTCTTGGCGTATCTCAACTTGAGTACTAGTTCTTCCTGAAATGTGGATTGTTTCCTGT CTTAATTTGGTCACATTTACTTTGCATTTGTGACTTGAGAACCAAGTAACATAAAATTGCTTCACTTTGTTAGAAAGTAG TACTGTCTTAGGTGTGGAGTATATTTCCAACTCAAATGAGATGCTCTCATTATTCAGTGAGTCATGCAAAACTCCTTTGT GTAAGAAATCTATAAGGTATTTGTTAGATATCTTGTAAACAAGTAGGATATCTTTTATTAATTGCAAATAGGTAGCATAA TCATGTAATTAGAGAAATAAGATATTTTGTATTTATTGTACTTTTATGTAGGGGTGAACATGGGCCGGGTAGATCCAATG AACCCATCCAACCCAATCCGATCCAATAGAAAAAATGCGGGTTGGATCAGATAATCGGGTTAGTCGGATGGATTTTACTA CAACCCAACCAAATTCGGATCGGATTTCAGATTCAGTTCAAATCCATCTAACCCAACCCAGAATCCATACATATAATAAT AATTTTTTGGCTTAAAAGCACATTTGGTCCCCCACGAATGCGAATTGTGCAAAATAAGTCCCTAAACTTTAAAAATAGCA TTCTTAGTCCCCGACATTACCCTCTGTTTGCAATTTTAGTTTTCCGTCTATAAACTAACAGAATCTGTTAAAAAATTGAT TAAAAAATAAAAGAAAAAAAATAAAAAACATGATGAATGTTCATCTTCTTCATCATAAACCCAGAAAAACCCAAATATCA ATTTCCATCATCACGTTCATTATCTACATCCCAATTTCCATCACAAATTCATAATAAAAAACTCATAGACATATGAATGA AGATTCACCATCACGTTCATCATATTTGTCTCCAAAACATCATCATCTATATTCTATAAGAGCAAGTCAATAAATACAAA AATATATAGCCCAAGGCTGGAAATTCTACCGTGAACGAAATTTTTTTTTTTTGAACACAAATTTATGGGTCCCTTGAACC ATCTTCCTTCAATCTCGTTCTGGGTACTTCAATCTCTCTTCCTTTGACCCAGAAACAACATCTAACAAACCCCAATCCAA ATCGCGACGTTCTAGGTAACTTCGACCCCTCTTCTCCTTCGATCTCGTTCTGGGTACCTTTGAACCCTCTTCCTAAGACC CAGAAACACCATTGAACAAACACCAATCCAGATTGCAAAGTTTTGGGTACTTTTGAACCCTCTCCCTTGGACCTAGAAAC ACCATCAAACAAACCCCAATTCAAAAAGGAGTGGAAGAGAAAGATTCACAAAAAATTGGGGAAGAAGGAGAAGAAAAAAT TGGAGTGGGGTTCTCTCTGTTGTACAATGCGTGAAGTAGTTCACATGGAGCGGTGGATGGGGGCCTCTCCAAAAATGAAA AAAAAAATATCAGAAAGAAACGCCCGATTGATCTTTAAAACGGATTTGGGAGGAAGGGAAAATGTTGAATTTGGATCTGG AAGAAAGGGGAAAGGTCGAAATCTGAATCTGCAAGGATTGGTGGTTATTTTCATATTGGTTTCATAGAAAGAAAGATGGG GCTGGACATTTTTTGTTGTTGGTTGCAGATTAAATGTTAGGAGTTTTAGATGCATTGATGAATGTAAGGTTTTAGGTTTA TTCTGGGTTTGGGATGAAGAAGATGAAGAAAAGGGGCACGTGCAAGGCACATGCGTGCCCTCTCTCCTACTAACCTTCTT CTCTCTCCTCCAAGTCATTTAAAAAAATCCACAAAAGAAAAAACCGTCCAAAATCTAACAGAAGGACTAACTGTGGTAAC AGGAGAAAACGTGGGGGACTGAGAATGCTAAATAAATAGTTTAGGGACTCATTTTGCACAATTCGCATTTGTGGGGGACC AAATGTGCTTTTAAGCCTAATTTTTTTTATAATTTTACTCATACTTGGAGTGCTAGTGTTGGAGTGATGACTTTTTGACA CTTTGAGACTTAATTATTTGTCATATTTGAACTTAGAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0002300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTTGCTGTTTTTGGCAAATCTGTAGCCAAGAGTCCAGAGGGTCTGCAGAGTCCTCAATCCAGCTCTGTTTCAGCAAT CAAAGATGGGTTTTTGGCCAAACACTTCACCTCTGTTTACCCTTCTTCTGTCACCCTCAATCTTGTCCCTTCGGCTCTCT TGGCATATTCCATTGATAAACATAATCCACTGCTCCCAAGGCTATTTGCAGTGGTGGATGACATCTTCTGCTTGTTTCAA GGCCACATTGACAATGTTGCTCATCTTAAGCAGCAATACGGATTGAACAAAACAGCAAATGAGGTGATCATTGTCATAGA GGCTTACAGGACACTACGAGATCGAGGTCCCTACCCTGCTGATCAGGTTGTGAGAGATTTCCAAGGCAAATTTGCATTTA TCCTGTTTGACAGCAGTTCTAAAACTGCCTTTGTTGCTTCTGATTCTGATGGGAGTGTTCCCTTCTTTTGGGGAACTGAT GCTGATGGAAATCTTGTTCTTTCAGATGAGACGGGGATTGTAAGTAAGAGCTGTGGGAAATCTTTCGCTCCATTCCCTAA AGGATGCTTCTTTACAACATCTGGTGGTCTGAGGAACTTCGAGCATCCGCTTAATGAGTTGAAGCCGGTACCGAGGGTTG ACAGTTCTGGTCAGGTGTGTGGTGCAACTTTCAAGGTGGATGCTGAAACTAAGAAGGAAACAACTGGCATGCCAAGAGTT GGGAGTGCTGCTAACTGGTCTTCTAATTACTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0002300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLAVFGKSVAKSPEGLQSPQSSSVSAIKDGFLAKHFTSVYPSSVTLNLVPSALLAYSIDKHNPLLPRLFAVVDDIFCLFQ GHIDNVAHLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDFQGKFAFILFDSSSKTAFVASDSDGSVPFFWGTD ADGNLVLSDETGIVSKSCGKSFAPFPKGCFFTTSGGLRNFEHPLNELKPVPRVDSSGQVCGATFKVDAETKKETTGMPRV GSAANWSSNY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45952:SF4
1 250 250 2.4E-139 –
PANTHER
PTHR45952
1 250 250 2.4E-139 –
CDD
cd01910
2 226 225 2.98528E-139 –
Pfam
PF12481
2 226 225 1.8E-110
IPR024286
SMART
SM01172
2 226 225 4.2E-151
IPR024286
Gene3D
G3DSA:3.60.20.10
53 202 150 6.7E-13
IPR029055
SUPERFAMILY
SSF56235
60 194 135 1.05E-13
IPR029055

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0002300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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