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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0002500 |
| Transcript ID | LotjaGi6g1v0002500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin canalization protein (DUF828); TAIR: AT3G22810.1 auxin canalization protein (DUF828); Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|A0A0S3SV61|A0A0S3SV61_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:607996..612578) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCTACAAGCGATTAACAACAGCCGTTGATGAATCCTGTGAAGCAAGATCAACGGTGACCCAGGCCAGTGTGTGCTTT TTAATTGGAGTCTCTTGTTCTCTCCACTTTCATTCATGATTACAGACAATCTCACTCACACTATTAATAAATGCTCACAC AATCAACCACTACACACAACAAACCCGAAATGGAACAGGCCAAACCCGACCCGTTTCACGACGGCGCCACCATCATGCTG CGGCCGCCGCGTGACCCGATGGAGTTCTTGTCTCGTTCTTGGAGCGCTTCTTCTGTCGAAGTCTCTAAAGCTCTCTCCTC CTCCTCCTCCTCCCCCGCTCAGCTTCCACCTTTTTCTTCTAATGCCACCATCATTCTTGAGGACATAGCTGGTGAAGTTG AAGAGTCTGCTACTGTTTCTGGCAACCCTTTTTCCTTTGCTTCCTCTCAAACCTCTCAGATGGTCATGGACCGTATCATG TCACACTCGGTATGTACGTTTTGTTTTGTTTTGTTTTTGTTACCAATCTTCTGCAACACTCCACTTTCTTTTGTTGCTTG TGTGTTGTGTTGTTCAATTTCATCCATGTTCTGTAAATAGAAACAAACAAGTTTATAAGATGGACCCTATGTTGTTCTTG TCTTATTTGTCTCTCTGTTTCCACAAGCTGATTTATAGCTGGGTTTGTCTTGTTCTGTTTCTTTCAGCCCCATTTCATAA AATTGTTTGTTGTGTCTCAATCCATGTTGATTTCCAATTTTGCATATCTGGGTCATCTTCAAAATCCCCTCTTGCAAAAG CAAAATCATACCCATTTCCATTTTTCTCAGTCATTTTTTTTCACCATTTTTTTTCAGCAGGATGTATCTCCACGCACATC AGGAAGACTCTCTCATAGCAGTGGCCCTCTCAATGGCTCCTTGACAGACAGCCCTCCACTTTCTCCCTCTGAAATTGAAG ATTTCAAGGTATTGGTTGCCGGAATCTCACATCAACCTTAGCAGACAACAATCATGTTGGCTTGTTTTGTTGCCTTCTCA TTTTTTATTTCCGCAATTTTTTTTGGGTAACCATGTTTTTATCAGCTTTCACTGTTACCAAACAAACATGACACCTGCAG AGAGTGCTTCACTTTTCCCTTTGCAAGTTTCAATGCAAACAATTTTTTTATTTTTTTGGCTACTACCCATATAAAAATTC AGTTAATTAAAGCTTAATTTAAGTCCAAAACCAAAACCAAAACCAAAACCTTCTCAATGATTAACCGAAAGGGTGTGAAA TTAAGCCTGCAAAAGTGCAAATTTTTCGTTTTAGACCCTCTTATCTTTGTTTTGTTCACATGTTAGTTTCCATATTGCAA TTGCAGCTACAACTATACTAGTACTACACACACGGTTGTCCACATTCCACAACCTCTGGTATTCTTTGTGGTTCTGGTCC CTCACTTCCCACAGCACCAACCAAAACTACCCCTTTGATTCCTGAGTTGGCAATCATGGCTCAGAAAAATTCTTCCTCTT GATTTGCATTAATGGTTGATGGTCCCCCCAATGAGCAAGTTGGGTGAAAATAAACACAAGCATATCCTGATTATAGCACT AGCACATCAAAGTTGTTACCTTGTTCAGAGTCAGATTCTAATTTTGCAAAAAACAATTACTTCAAGAAACAAAACAAGGA TAAGAAATTGATATGAAGGAAATTTCTGAATGGCCCACTTTTCTCTGCAGTATAACCGCTCTAACAACCACAACCATAAC AGCATCACCACCAGCTTGAATAGTCAGTACCGGGCGGCCGCAGCTGGCGGTGGCGGTGGAAAGACCGTTGGGAGGTGGCT GAAGGACAGGAAGGAGAAGAAGAAGGAAGAAATGAGGGCCCAGAATGCTCAGCTCCACGCGGCGGTTTCGGTTGCCGGGG TTGCCGCAGCAGTTGCGGCCATTGCCGCCACAACCGCCGCTTCTTCAGGCTCCGGCAAGGACGAGCAGATGGCCAAGACG GACATGGCGGTGGCGTCGGCGGCCACGCTGGTGGCTGCTCAGTGTGTTGAGGCTGCGGAAGCTATGGGAGCTGAGCGGGA TCACCTGAGCTTGGTGGTTAGCTCCGCCGTGAATGTGAGGTCTGCCGGCGACATCATGACTTTGACAGCGGCGGCGGCGA CAGGTACGCGTGGCAACTGAAATTGCAATTTTGTTTGTATCAATCAATTAAATTAAAGGACTTTTCTTTTTTGCGATTTT TGATTTTGTAATAAGACAATTTTTAATTCGATATCATCCAATTATTTAATTGATGTAGTCCACTCAACCATATAGAAGGT TTTATGGTATTATTGCATTGCATAATGGGTATTCATTCATTATTCATTATTTTACTAAAAAAACAGTCATATTTGATTAT AGTCCTTCAAAATTAGCATCCACTAAATGAAAAATATGTAACCAAAATTAGCATCCATTTGCTTCAAATCAAAATGAAGT TACTTCTAAAAACACATTTAACTAGAAACAATTAAAAAAAAACAAAAATCACTTCATTTAAAATTTAATTTTCATCAAAA TTAATTATATAAAATCATGATAATCTAAAATTGACTTTGCAAATACTCATCCAAGCACACAATTTTTATAGTTTTGATAA TTTTGTTGATTATGGTGTTTTGCTTTTTGTATTTGCAGCTTTACGTGGGGCTGCCACGTTGAAAGCAAGGGCCCTTAAAG AGGTTTGGAATATTGCAGCTGTAATTCCTGTGGAGAAGAATTTGGGAGGTGGTGGCTATGGTAATAATGGTAATGGCAAT GGTAGCAATGGCAGTTCTCACAGTAGCTTCAGTGGTGAACTTGTGCCAGAAGAAAATTTCTTGGGCATCTGTAGTAGAGA ATTGCTAGCTAGAGGTTGTGAGCTCCTCAAACGCACGCGCACAGGTATTAACATGTTTGGATCAATTTATTTTTCTCACA TCATGTGTAGAATGATTTCCTAAAAGACCTTTGTTCTGTTTTGTTTTAAGTTTTAACACATTGTATTGTGCTTCTCAATA GGTAACTTGGTAAATCTAGTTATTTGTTTCTTTAGAATCATTGATCATTGGAAAGTGATTTGATGTGAGATTTGCTTGTA GGTGAGCTGCATTGGAAAATTGTATCTGTTTATATAAACAGGATGAACCAGGTGATTATTTATTTAATTTTTTCCTCTTC ATACCTTATTATGCAATGTACTTTTGTTCTTTAACTTGGCCAATTATATGGTCATCAATTAAGAGTTTCAATGATGAGTG TGAACCTGGTCGTGGAAAAAGTTGTATAAAGTGATGGCGCTTAACACGATGAGATAGTTTCAAAGATCAAGTTGCTTTAG TTTCCGAGAAATCTGCAATTGTAATAACACTTTGGAAGCTCTTTTTGTGCATCAGGTTATTCTGAAGATGAAGAGCAGAC ATGTTGCTGGGACCATCACAAAAAAGAAAAAGAGTGAGTGTTGTGTTGTGTTGATTACTTTTGTCCCGCTCTCACTAATA ATTTTAACAGATTTGGCTGCATTTGGGGATTTGTGAAAGTCATGCTCTTTAAAGCTGGAAAAATATCAAAAGGGTTCTTC TTTATTCTTCAATTTCACACCCCTTTCTTTTGAAATTTTCATTCACTGAAAACACTAAAAGTTACCATAAGAAAATCCAA GAAGTGGTTACAACTTAAAAAGTACCACATTTCTTTCTTTTCTTGCAATTTTTCTTTTATAACATATAGCATTGTTGTTT CATTCACAGATGTGGTGCTTGGGGTGATTAAAGATATGCAGGCTTGGCCTGGCCGGCACTTGCTAGAAGGTGGCGAGAAT CGCCGCTACTTTGGTTTGAAGACGGTGATGCGGGGTGTTGTGGAATTTGAGTGCAGAAATCAAAGAGAGTATGATGTGTG GACTCAAGGTGTGTCAAGGCTTCTGTCGTTTGCTGCAGAAAGGAACAACAAGAACAGAATATGCCCTTCTAAGTGATTTA ATGATGAAATTGTACCATGAACATGATAGATCTTTAGATAAATGGTGGTGGGGTTTGGATCCATTTGTAAAAAGGGGAAA TTAAAGTCCTAGTTATGGTAGATAGGGGTGTCTTTAATCTTGGGGAGCAATACATTAATGTATTTTTTTGAATGGGAAAG TATTGTAATTTGAACCAAAGTGAAAATCATGTGAAGCTTTGCCTTATTTGGTCGACTTGGAAAGTAAAGGAGTATCTTGG ACCGGACAGTCAAAAGAAAAAGGGTAAGAGACACGATTGAGTGAAGTGTAATGTGGAAGAATGAAGATAAAGACATGAGC TGGTTTTCTTGTGTGCTTTATTTATTATACACATTGGTTTGGCCTTTCCCTGCTTAGATCCCGATAAATTGTTTTTAAGG TTTATAAGCTAGATCCATCATTGATTTGGATGACATTATTATTCCACTTTGTTTATTCTGTTTGTTTGAAATTTAAGTGC TGCAGTGGGGTTCTCTCTAGCATGGTTCACTTAAATAAAAACCGTGAAACATTGTTAGAATATGAAGGTGATATCTTATG AAATTTTGGCAATCGTAGGACAG
CDS sequence (LotjaGi6g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCACACAATCAACCACTACACACAACAAACCCGAAATGGAACAGGCCAAACCCGACCCGTTTCACGACGGCGCCAC CATCATGCTGCGGCCGCCGCGTGACCCGATGGAGTTCTTGTCTCGTTCTTGGAGCGCTTCTTCTGTCGAAGTCTCTAAAG CTCTCTCCTCCTCCTCCTCCTCCCCCGCTCAGCTTCCACCTTTTTCTTCTAATGCCACCATCATTCTTGAGGACATAGCT GGTGAAGTTGAAGAGTCTGCTACTGTTTCTGGCAACCCTTTTTCCTTTGCTTCCTCTCAAACCTCTCAGATGGTCATGGA CCGTATCATGTCACACTCGGATGTATCTCCACGCACATCAGGAAGACTCTCTCATAGCAGTGGCCCTCTCAATGGCTCCT TGACAGACAGCCCTCCACTTTCTCCCTCTGAAATTGAAGATTTCAAGTATAACCGCTCTAACAACCACAACCATAACAGC ATCACCACCAGCTTGAATAGTCAGTACCGGGCGGCCGCAGCTGGCGGTGGCGGTGGAAAGACCGTTGGGAGGTGGCTGAA GGACAGGAAGGAGAAGAAGAAGGAAGAAATGAGGGCCCAGAATGCTCAGCTCCACGCGGCGGTTTCGGTTGCCGGGGTTG CCGCAGCAGTTGCGGCCATTGCCGCCACAACCGCCGCTTCTTCAGGCTCCGGCAAGGACGAGCAGATGGCCAAGACGGAC ATGGCGGTGGCGTCGGCGGCCACGCTGGTGGCTGCTCAGTGTGTTGAGGCTGCGGAAGCTATGGGAGCTGAGCGGGATCA CCTGAGCTTGGTGGTTAGCTCCGCCGTGAATGTGAGGTCTGCCGGCGACATCATGACTTTGACAGCGGCGGCGGCGACAG CTTTACGTGGGGCTGCCACGTTGAAAGCAAGGGCCCTTAAAGAGGTTTGGAATATTGCAGCTGTAATTCCTGTGGAGAAG AATTTGGGAGGTGGTGGCTATGGTAATAATGGTAATGGCAATGGTAGCAATGGCAGTTCTCACAGTAGCTTCAGTGGTGA ACTTGTGCCAGAAGAAAATTTCTTGGGCATCTGTAGTAGAGAATTGCTAGCTAGAGGTTGTGAGCTCCTCAAACGCACGC GCACAGGTGAGCTGCATTGGAAAATTGTATCTGTTTATATAAACAGGATGAACCAGGTTATTCTGAAGATGAAGAGCAGA CATGTTGCTGGGACCATCACAAAAAAGAAAAAGAATGTGGTGCTTGGGGTGATTAAAGATATGCAGGCTTGGCCTGGCCG GCACTTGCTAGAAGGTGGCGAGAATCGCCGCTACTTTGGTTTGAAGACGGTGATGCGGGGTGTTGTGGAATTTGAGTGCA GAAATCAAAGAGAGTATGATGTGTGGACTCAAGGTGTGTCAAGGCTTCTGTCGTTTGCTGCAGAAAGGAACAACAAGAAC AGAATATGCCCTTCTAAGTGA
Protein sequence (LotjaGi6g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTQSTTTHNKPEMEQAKPDPFHDGATIMLRPPRDPMEFLSRSWSASSVEVSKALSSSSSSPAQLPPFSSNATIILEDIA GEVEESATVSGNPFSFASSQTSQMVMDRIMSHSDVSPRTSGRLSHSSGPLNGSLTDSPPLSPSEIEDFKYNRSNNHNHNS ITTSLNSQYRAAAAGGGGGKTVGRWLKDRKEKKKEEMRAQNAQLHAAVSVAGVAAAVAAIAATTAASSGSGKDEQMAKTD MAVASAATLVAAQCVEAAEAMGAERDHLSLVVSSAVNVRSAGDIMTLTAAAATALRGAATLKARALKEVWNIAAVIPVEK NLGGGGYGNNGNGNGSNGSSHSSFSGELVPEENFLGICSRELLARGCELLKRTRTGELHWKIVSVYINRMNQVILKMKSR HVAGTITKKKKNVVLGVIKDMQAWPGRHLLEGGENRRYFGLKTVMRGVVEFECRNQREYDVWTQGVSRLLSFAAERNNKN RICPSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| PANTHER | 13 | 482 | 470 | 1.1E-258 | – | |
| PANTHER | 13 | 482 | 470 | 1.1E-258 | ||
| Pfam | 33 | 321 | 289 | 1.7E-109 | ||
| MobiDBLite | 111 | 140 | 30 | - | – | |
| MobiDBLite | 111 | 161 | 51 | - | – | |
| Coils | 187 | 207 | 21 | - | – | |
| TMHMM | 204 | 226 | 23 | - | – | |
| Pfam | 368 | 472 | 105 | 1.0E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0002500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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