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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0003400 |
| Transcript ID | LotjaGi6g1v0003400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ROP-interactive CRIB motif protein; TAIR: AT2G33460.1 ROP-interactive CRIB motif-containing protein 1; Swiss-Prot: sp|F4IVV0|RIC1_ARATH CRIB domain-containing protein RIC1; TrEMBL-Plants: tr|K7K5S1|K7K5S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0003400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:721820..727946) extracted from Lotus japonicus Gifu genome v1.2.
GATTCTCAACCGGCAGGGGGATGGTGCATCAAAAACCAGAAGTTCTCTGTGTTTTAACTTTTGAGATTTTTTTTTCCACC CTGAAGTCTCCCTCTTCTTGGTTGGTTTATTCTCCTAACTACCAACCAAGAAGCATGCACATTTCTTTTTCTGCATAGCT TCTCATCTCCCAACCTTGTCATCTTGATATATTCATGTGTTCTACCTCTCCATTTTGAGGTTTTATGGTTTCAACATTAG GGTGGCCAATAAGGTCATGTGATGATTACTTTAATAATTTGTTCTGAAGATAGCCAGGTAGGTGAGGTGTCTTTGTTGTA ATCTTTATCTTCTTTTCTTCATTCTTTTTTCCAAATCAAAAAATTTCCATTTCCATGATGAAACATTGTCCCCTGTTGGA AGTAGTTCCAGACAATAAATTGGGTGTATGTCCTTTGTGAAAACTTCACTGATAAATAAGTTTTGGAGATTGGCTAGCTT GTAGCATGTTTAATTCCGCTTTTTTTCCTCATAATGATTAAAAATTCAAATGCTACTCTCATAAGTTTCTCCCCATAATT AATTATGGTTTTAGGATTAATTGTAGAAGAATTTGCAAACAGGATGTTTGAATCAAATTTTCATTTATCATAATTAATTA TGACATCATAAGCTACTAAAATATTCTATCCAAACTTGTTTATGTATGCAGAGTCAACTCTATAAGAAATTTCAAACATG CAATTAGTAACACATTTAATTCTCCTTCTTTTTCCTCTGAGTTAATTCTAAAATTGAGAAGTTATTTAGAGACATGACTT GTTTAAATCGACAAATCAACTTTTTTCACAGAATTAATTATAAAACAAGAAGCTACTCACATAAACTTTCCTCTAAAATT GACTTCAGTTTTAGAATCAGTTGTAAAAATGTTTTCTGAAACATGCACTTAGTAACTTTAATTTATTGTGTCATCAATTA AAATGGTCAAAAGATTATTGGTAAAAAGAATGATTTCTTACATCACCATTTGGTTGTTCTTTCAGAAACTGTTAGTAGCT TCCACTGAAGATTAAAAGCACCAGCAACTTTTGGGTGGAGGGTTTCTGGTGCAAAAATATCATCGAGTTTCATCCATAAT CATTAATGTCGACCAAGGTCAAAGGCCTCCTTAAAGGACTTCGATACATATCCCAAATATTTGGTAAGTAAAATCTCCAT AGAAGATAGTAACTTTAATTTAGACCTCTGATTTGATTTGGAGTCATTTACTCTTATGCTTCAATTATTCTTTTTCAATT ATGCATTAATTCTTTTAAAATAAAAACCAAATACATGTACGAGAACCAAGCCTAAAAATAAAAGAAAGAAAACTCTAACA CTCAAGGCGTATACAATTCCTTCAATTATATTTTAAGATTGTGAATAGTCTCTTCGTCACTTCCGTTAAACTCTAACCCC ACAAAACTCGAACCTCAGCCAATGCATTTCCTCACTTAGATCCATCACCCAAACACACTGAAATTTCTTATTGTTAGTTT AGTTATGCTTAGGATGTGAAAAATCATATTATTAAGTGTGATGTAGAGAGTAATTGGTAATCATTCTGCAGATGAGAAAG AGGAAGAGATTCAAATTGGATTCCCAACAGATGTGAAGCACGTGGCACATATTGGATCAGATGATCCATCAGCAAATGCA CCAAGCTGGGTACTATTCTCATTCTTTAGACTTTTCTATCTTATCTTATAACTAGTTTATAATTCTTCTTCAAGAAACAT TATTTTGTGTGCAATTTGAAAATTTATGCAGATGGGCGACTTCAAAACGCCTAAAGATGGAACAATAAACGCCCCTGAGG CACCTGAAGGTTTGTATACATTTCTCTATACACAACATTTATGAATAAGCTTCACACTATTTTTGCTTGCGTGTAGTTGT AACATTATCATACACATTACACACTGCACATTTAGATGTATGATAATTAATGACCTATTCATTTTCTTATTAATGCATTA CAATCAAAACTACATAGCATTTAAGTTTTTTTTTAATATATACATCTCATTTAAGAATACACCCACATGATAAGTGGCTA TGAATAAGGGTATGAATAAGGGTATGTAAGAAAAATAACTTAATTAAACGTTTATTTTGTTTTTAAAGGTCAAAGAACAT GCATATAAGATAACATAAGAGGTTTGATAATCTATATACACAGGGAGAGGTTGGTGGGGCAACAGCCTCACACGATTCTA AAATAATAAACTAATAGTCTACTATAACGATTTGGTCCTGTATAATACGCTAAGTTAGAAAATGAACCCTCTTCGGAGCA AAATTTGATTTCAGTCTCTACTGTTTGAGAAATTACTGATTTTGAGCCCTGTCGGAGGTGGTTGTTCGGTGACCTTTACC ACTAACTCACTAATCAATATCACCCCGACAAGATTGGTGAAGCCATGTGGCAATTACATGTAGGATCGGTGAAACCATGT AGCAAATGTTATCGGATCACCACCTCTTGCAGGGACTAAAACTATGTAGTTTCTCAAACAGAAGGGATTGAATTTAAACT TTGCTCTGAGGAGGGACCATTTTCAAACTTAACGTATTATACAAGGACTAAAAGCTTATTTAACTCTATTAAAACATTAT GTGGTATATTGCCTCCACACAATAGAAAATGTCCCTACATTGCCATATCTTTCCATAACATTGTATAGAATTTTTAAACT GTGAAAAACTGTAAAGAATAATTATAATGTATTTTTAAATTTTTAATAGTAATATATTATGTTGTTCATGTTATAAATTT ATTTTTATATATATATATATATTCCACGATTGTAAATCTGTAGATTCATTACTCCATTTACATAGAGAAAGGAGGTTAAA ACAAAACAGGTACTGACACAAGAGCTTAATTCATAAAGAAAACACTAAAGTTATCGTATAAGTGTCTTTTTTTATAAGCA ACATAAGTGCTTATTGATAAGTGTTTACACTGATTTTTCGTAAAATCACATGTAAATTAATTATTTCAAGGATCAGATCC TATTTTATGGGCTCTCCAAGTCCGACGGCTTACAGGCAATTTATGTGTGTTTTCAAGAGTGAAAAAGTGAAGAAGTTGCC CGGTGACAACTTGAAAGAAACAACACTCCGGTGAGTATTGCAATAGATGTAGAAACAAGTAGAAATTTAAAAGAAGATAA AAAAGATTGCAAGGAATCAAAAGGTAATCAAAGAGAAAACAAATAAGAACAAAGCAAATTCATTACTGGAATGGTAAATG GTGGAAGGAATCCGTCTACTGCACACTCGTTGAAGCCGTTTGCCAAAACCGTGGGCTTGAAGGCTTTTTTAGAGCTTTGC AGTCATTTAGGAATCCAACCCTTTGTCCTAGTTACAAACTAGTATTTATAGAGCTTAAAATGGAACTACCATTTTAATCC TACGGTGGAGATTAAATCTTAGAAAATAACTCCCTACATTATAGCCACATACTTGGCATAATTACAAATAAAATAACTTG CAACAACTTGTGTCAACTTCCCGTAGCTATACTTCAGGTAACTCCTTGCACCACTTCCACCTCCATAATTGCCACGTTCC ACTTTCTTTGACAGTTGCCATCTTTTTCCTTGTCTTTAGTCGAGAACTTCACCAATCAATTAGACAACTTGGACACATTA AAAAATAGTTGAATTGATAACCAATACCATGAACAATGCTCCATCAACATATAATTTCGACACCAAAACCAGCACCATAT TTCGACTAGAAATTATAAGGTTCTGGCACATGATATATATAAAATTTTGGTATCAACAGAGGCCCCCCAAATGTTGTTGC TCGAAGGAAGTGAGAGGAATAACATTTGAATTGCAATACCAAAATTTGAACAAACACTTCATGGCCTTCCATGATTATTT AGCCATTTCCCATTTGAATATTCTTTGAGTTCTCCTTGTACAGTTCCAATTCAGATTCTGTGGACAGCACCATATTCTTT CAACTATGAATATTTTCAACGTCATTTTGAGACTTCAAAAGACTCTTCTTGAACTTTAACTTGGCCAAATTGGAAATCAT GAGGCCAATTCGAACTTGGTGATGCCATTAAGCCTTCCACAACAATATGTTCATTAGCTTTAAAACGCAGCCAATTTTTT CTGCGGCTTTGAAAAACCGTTTAATTTCATTTTCGGCTATGTGAGCCGAAATTCGAACTAAGTGCTTGAAATTACTTCAT CCAATTCCCTTTCGTGGAAGTGATACTGAATGTATCATGTATGGAATTTTCAGACTTGTAATTCCAAAACTTGAAGCATG AACATCCATAAAAACCAAAATTTTCGAACACACATGCCCTGCTTCAAACTTGAAATGACCCTCCTTCTAGCGCCAATTTG TTTACACTGATTTTTCGTAAAATCACATGTAAATTAATTATTTCAAGGATCAGATCCTATTTCATGGGCTCTCCAAGTCC GACGGCTTACAGGCAATTTATGTGTGTTTTCAAGAGTGAAAAAGTGAAGAAGTTGCCCGGTGACAACTTGAAAGAAACAA CACTCCGGTGAGTATTGCAATAGATGTAGAAACAAGTAGAAATTTAAAAGAAGATAAAAAAGATTGCAAGGAATCAAAAG GTAATCAAAGAGAAAACAAATAAGAACAAAGCAAATTCATTACTGGAATGGTAAATGGTGGAAGGAATCCGTCTACTGCA CACTCGTTGAAGCCGTTTGCCATAACCGTGGGCTTGAAGGCTTTTTTAGAGCTTTGCAGTCATTTAGGAATCCAACCCTT TGTCCTAGTTACAAACTAGTATTTATAGAGCTTAAAATGGAACTACCATTTTAATCCTACGGTGGAGATTAAATCTTAGA AAATAACTCCCTACATTATAGCCACATACTTGGCATAATTACAAATAAAATAACTTGCAACAACTTGTGTCAACTTCCCG TAGCTATACTTCAGGTAACTCCTTGCACCACTTCCACCTCCATAATTGCCACGTTCCACTTTCTTTGACAGTTGCCATCT TTTTCCTTGTCTTTAGTCGAGAACTTCACCAATCAATTAGACAACTTGGACACATTAAAAAATAGTTGAATTGATAACCA ATACCATGAACAATGCTCCATCAACATATAATTTCGACACCAAAACCAGCACCATATTTCGACTAGAAATTATAAGGTTC TGGCACATGATATATATAAAATTTTGGTATCAACAATAAGCTAATTGGTTTTTTTTATTAAAATAAGTTAAAAATATGTT CAACATAAGTTCTTATTCATAAACTATTCTAATTATAAAAACAAGCTTAAAACAACTTTTAAATAGATCATAAGTTGTAT ACATAACTTCTCAAACACTTGCATAAGATAATTTAGTTTAAATAAAATCTACCAAATGAATGAAGTAAATCCAATAAACT AAGGTACCAGATTTATTCACATTTATGTATTTATTTTCTTTGTTACAAAGTTGAAACATGATCATGAATGGAGTGTTTTT TTTCCTTTCCAGAACATCACAATACAAAGGACAAACCGTCTAAGATTCGACATTTGATTCCCAAGTCGAGACACCAATCC ATCGACACTGAATCCAACACGGCGAAGAAGCACACGCGCCGCCACCACCGAGCATCAGATCCATCTGCGGACTCCTCCAC ACACGATTCATCGTCGGGTGGCTCTAGACACAGGCGGCACCGTCGCGGCTCGAACCATGGCTCTGATTCGCCATCGCAGG ACGCTCCAGCGTCGGGCAGTAAACACGGTCACCGGAGGAAATCGAAGAACTCCGAAGACGGTGGTTCGGTGCGAAAGCCA TCGTCCAGAAGGTCATCCAAAGGGGATTCGCTAACTGAAATCTCTCTTTCGGATTTTGGGTCGGGTGAATCTGGATCCGG GTTGGCCCGATAGAGTTTTAAATTGAGTGAGTAAGAGAGAGAGAAAGTGATGCTCATCATCTCAAGAGTTAATTAATTAG GGAGTCAAGAAGGGAAGGTAAATTTGTTCGTTTTACAAGTTGTAAATTACATATTTTTGGTGCAATCTTTTAATTGGGAT GTGGCTTCGGTCCTTTTCTTACCATTTTTTAATATTTTTTTAACATC
CDS sequence (LotjaGi6g1v0003400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACCAAGGTCAAAGGCCTCCTTAAAGGACTTCGATACATATCCCAAATATTTGATGAGAAAGAGGAAGAGATTCA AATTGGATTCCCAACAGATGTGAAGCACGTGGCACATATTGGATCAGATGATCCATCAGCAAATGCACCAAGCTGGATGG GCGACTTCAAAACGCCTAAAGATGGAACAATAAACGCCCCTGAGGCACCTGAAGAACATCACAATACAAAGGACAAACCG TCTAAGATTCGACATTTGATTCCCAAGTCGAGACACCAATCCATCGACACTGAATCCAACACGGCGAAGAAGCACACGCG CCGCCACCACCGAGCATCAGATCCATCTGCGGACTCCTCCACACACGATTCATCGTCGGGTGGCTCTAGACACAGGCGGC ACCGTCGCGGCTCGAACCATGGCTCTGATTCGCCATCGCAGGACGCTCCAGCGTCGGGCAGTAAACACGGTCACCGGAGG AAATCGAAGAACTCCGAAGACGGTGGTTCGGTGCGAAAGCCATCGTCCAGAAGGTCATCCAAAGGGGATTCGCTAACTGA AATCTCTCTTTCGGATTTTGGGTCGGGTGAATCTGGATCCGGGTTGGCCCGATAG
Protein sequence (LotjaGi6g1v0003400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTKVKGLLKGLRYISQIFDEKEEEIQIGFPTDVKHVAHIGSDDPSANAPSWMGDFKTPKDGTINAPEAPEEHHNTKDKP SKIRHLIPKSRHQSIDTESNTAKKHTRRHHRASDPSADSSTHDSSSGGSRHRRHRRGSNHGSDSPSQDAPASGSKHGHRR KSKNSEDGGSVRKPSSRRSSKGDSLTEISLSDFGSGESGSGLAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 185 | 185 | 1.2E-45 | – | |
| PANTHER | 1 | 185 | 185 | 1.2E-45 | – | |
| Pfam | 27 | 59 | 33 | 6.8E-6 | ||
| ProSiteProfiles | 28 | 41 | 14 | 8.714 | ||
| MobiDBLite | 41 | 204 | 164 | - | – | |
| MobiDBLite | 66 | 103 | 38 | - | – | |
| MobiDBLite | 160 | 180 | 21 | - | – | |
| MobiDBLite | 181 | 196 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0003400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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