Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0003500 |
| Transcript ID | LotjaGi6g1v0003500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein; TAIR: AT4G14310.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|F4JUQ2|KCAI_ARATH KIN14B-interacting protein At4g14310; TrEMBL-Plants: tr|A0A072VSI4|A0A072VSI4_MEDTR Transducin/WD40 domain-like protein, putative; Found in the gene: LotjaGi6g1v0003500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:734114..738924) extracted from Lotus japonicus Gifu genome v1.2.
TGATAATCATTAATATTTGTTTACCTTTGATTAAGGAAAATGCTGTGAATACTGAAATGATGAAAATGAGTGAAATTCCA CTCCCGGCTGAAAAATTTCAAAACTCAAAATTTCACTCTTTTCCCGCTCATCTCTCCATTCCATTTCTTCCTAGTTCCTT CCTTCACCAATCTCTTGTTGTTCTTCTTCAATCCATGTCATGTCATGTCATGTGAATCCATCAAATATCACACCATATTA GTCTTGAATGAATATTATCTATCTTACTTAATTAATCAGCCAGCAACTCAACCACCGTCATGTCCACTCGCCGCGGCGGC GGAGGCGACGCCGCCCTCAGATCCACCACCAGGTCCGTCACTCCTCTCTCAACCTCCACCGAAAAGGACAACAACAACAA CCCTCGCAGATCCACTTCTCGCGGATCCGGATCCACCCACAACCCGACCCATAAACCCGTCACCAAACCCGTCCCTCGCG TCGACCGCAGATCTTCCTCCTCCTTCTCCTCGCTCCCCCGAGGCCGAAGCCCCAGCCCCTCCGACCTCCGCCAAACCCGC CGCGTCTCCGTCGACCGGGCCGCCAAGGACCCCACCCACCTGAAGCGCCGCGGTGATCCGATCGGTAAATCAGCCGAGAA ACCCAGCCGCAACGAAAAGTTGAAAACTTGCTCGAAGGAAAGTGAAGAGAAGGACAAGTACCCTAGCAGGCTTCACGAGA AGCTTGCGTTTTTGGAAGGGAAGGTGAAGAGAATTGCCTCTGATATCAAGAAGACCAAGGAGATGTTGGATATGAACAAC CCTGATGCTTCAAAGGTCATACTTTCTGATATTCAAGACAAGATCTCGGGTATCGAGAAGGCCATGGTTCGTGTCGTTTC GACCGAAAATGAAAATGATAATGGTGATAATGGTAGCACCAGCAAGCAATTGGGTGTGTGTGTTGTTAATGTTGATGACA ATGATGGGGTTGAAATTGAAACTGAGAAAGGTAAGAGCTTGGTCAAAGGGTTGAACAATGAGGAGCTTGAGGCCAGGTTG TTTCCTCATCAGAAGCTGCTTCGGGATCGGACAGTGAATAAGGACTGTGTGAAGGTGGAAGATGAGGTTTTGAGCCTTGT TGATGACAATCCGATCGCGGTTGAGTTCTTGGCTTCTCTTGAAAAAGGGAATGGAAAGGTTGATGCTTGTGGTGGTGGCC CTTCTGATGGGAACAAGGCTTCTGCTTTGAACAATCAAAAGTATGACATTGATCTTCTACTAGCTGCTGATGAGAAGCTT GAGGAGTTTGATGATCAGGAGAACAAGCAAGGGATGTTTGTGGAAGAGGAGATTGATGAGAATTTCAATTTCAAACTGAA TGAAATAGGGAACAAAACCGCGGCTGCTGGATGGTTTGTCTCTGAAGGGGAGGCTGTTCTTCTTGCTCATGATGATGCTT CCTGCTCTTATTATGATATTGCCAATTGTGAGGTATTGCCAATTTAAATTCTCAAGCCGTGTTATTAATTTTGTTGACAC CAAGTTGATCTCTTGTTTTGCATGAATATTGAGGTAGTTGATTCATATGACCATTACCATAAGTCACATGACATGGAAAG AAGTGTTATTTTTTTTAGTAAAAGATGCTCTTATTCTCTTTATAGGGGCTGGAACTGAGAAGTAATTATTCAAAAATTTC ACTCTAGTTTCTCAAATATTGATCATAGTTACCTATTATAGAAGAAGACTAATGTGTCCAATGAAACTTCTCTATTTGTA TAGACTGATGTTTTTATTTGTCACTAAAATTTTCAGAAATGAATTCATGGTTTTAATATATGATTAATGATCATGTCTTT AAATTGCAACCCGTATCATTAATTTTGGTCTTACCAAGTTGATCTTCTGATTTACCTGAAAACAATGCTGAATATTGAGC CAATTTATTTATTTGGTGATTAAACTTTAAAGGTAATCCTTTTGTTCTAATTAAGGGCTAATAATGTATTCTAGCAATCA GTAGTATATTATCAACATTTGAGAATATTAATTTCAAAAAAAAAAACATTTGAGAATATTAGGGTGTAGCATGGAATTGT CACACTTGTAGATTAATGTGTTTGTCGTCAAGATACTCAGGAATGAATTTATCATCTCTTTATATCTATGATGCTAGTAT GCTGTTCATTTACATATAATCAATTCATTCAAGGTAAACATAGGTATCATTTGGTGTTGATGTTTTCCACAACGAATACC AACAGATTCATGTATGGACTTGGTGTAAGAAAGAAAAAACATTTTTTCAGCTGAAAATTTATCTCCCTTTCAGGAAAAAG CTGTATATATGCCACCGCCTGGAGTTTCAAGTAATGTATGGAGAGATTGCTGGGTAATTCGTGCTCCGGGTTCAGATGGT TGCTCTGGAAGATTTGTAGTAGCTGCCTCTGCTGGCAATACAATGGATTCAGGCTTTTGCTCGTGGGATTTTTACACCAA GGAAATTCGAGCTTTCCAAGCTGAGTCTGGAACAACCTCCTCAAGAACAGCACTTCGACCATTGCCTAATAACCTTGTGC AAAGAAGGAATTCTGCTGCGTCTTGCATTATGCCAGCAGAAAGGCAATGGTGGTATAAACCCTGTGGACCTCTTATCATC TCTACTTCCAGCTCACAGAGGAGTATAAAAGTTTTTGATGTTCGTGATGGAGAGCAAATCATGAAGTGGGATGTTCAGAA GCCTGTTCTGGCCATGGAATACTCCAGCCCCTTGCAGTGGAGGAACAGAGGAAAGGTTGTGGTAGCTGAAGCTGAATCCA TTTCTTTGTGGGATGTGAACTCACTCAGTCCGCAGGCTTTGCTCTCTGTTCCTTCTGGTGGTCGAAAAATTTCTGCTCTC CATGTGAGCAATACTGATGCAGAGCTGGGTGGAGGGGTTAGGAAAAGGTGAGTAGATTTGGACCTTAGCTTCTTGCTTCA ACCTTTGCCCAAGATGTTCTGTTTCTTCATTAGACTATCTTAGCTACTGTATTCATTCTATCAACTATTAGCACAACCCA AACACATTTATCTTTAGGGTAATTTTGTGTTGGACCATGTCCATCCGTTAACTATGTTTTTACTTTAGGAACAATTCTAT TGGTCCACCTATGACCCATATTTCCTCTCCTAACATTTAGTACATGTTATTTACAATATGCTCCTTATGTGCTAAAATTA ATTTGCAGAGAAGTTCTTTTAGCTTGTGAACCGATTTTTGTTGGTCTACGATATTTAATATATGTCATTTATAGTATGCT TGTTATGTGCTAATAAATGCGCAAGAAAGCTCTTTGATTTACCATTTTTTTCATCGTCATTGTAGACAAAGACTTCTTTA TTCTTATTTTAGTTATCTTTTCATCTAAGGAAATTTCCGGGTCAAATCTTCTCAATTTGTTTTGTACTTGTTGAGGAAAG CATCTTTTGAGGAAAAGAGAATTTTTACAAGTGTTTCATTCATGGTCATGAATTTTCACTACTTTCTCTCCCTTTTGTTA ATCAAGTTAAGAAATATGATGCAGAGTAAGCTCATCAGCGGCTGAAGGAAAAGACGGTGTGTTCTGCACTTCAGATTCTA TCAATGTCTTGGACTTTCGCCAGCCATCCGGCGTGGGCCTCAGAATATCAAAACTTGGTGTCAATGTGCAATCAGTTTTC TCTAGTGGAGATTCCGTCTTCCTTGGATGCACCAGCTCAAGCTCAATGGGCAAGAAGCAGTCCTCATCACCACAAGTTCA ACAATTTTCGTTGCGCAGACAAGCACTGTTTAGCACTTATGCTCTTCCAGAGTCCAGTGTACATTCCCATTATGCAGCAA TCAGCCAAGTTTGGGGTAATTCTGACTTTGTCATGGCTGTTAACGGCCTAGGACTACATGTGTTTGATGCGCAGAAAGAT GATCCATTAAGGGTTCTCAATCTCAATATGGATTCGTCCTCCAATGCTCAAAGTTTGAGGGAAGTTGTTGGTCCAGATGA CTTGTATTGGCCTTCATTTGATTATCTGGGTTCTCGTGCTCTTCTGATCTCCAGAGATAGACCAGCTATGTGGAGGCATC TTATAGTTTGAGACATCAATGAATTTCTGGTATTAACTTGAAGGATGAATTTGCTTCTTTAGGTTTAAATGATGAATCAC TGCTTTTGTATTTCCTTGCTGTGCTTTTAAGGACTAGATTTTGTGTTTTTTGTGTTAGATGTGTTGATTGTCTTAGTTTT TTATGCAATAGCTTTGTTTTCCCAGGGTGAAAACTTATATCTTCAGACTGGCAACACTGGAAGAGGAATATGTATTTTAT ATATAGCTCAACCTACTGGTTTTTCTTCTTGATCTGTGTATTTGGTAATAAAATGATCAGTAGGAGAACTCAAACCTGTA ATTGCCGAATTTGAATATTTGAGTCTGAATTAAACTTGTAATCGAGCGTTTCAATTTGGCCTATGACAAGTCCACTAAAA GTGTTGAATGCAGCTTGATAAATTCACAGTTGCTCTATTGTTTCTCTGGTATAAGACATGTATGTTTCACATGTAAGACA ATTTTGTTCGATATGAGAATATCCACATCTTGAAGGAGCTAACTCTCAATAGGAGATTTGTTTCAAATCTATCATCACAA TTTTCTTTCTCACTAGGCTTTGAGTTGCTCTCTTCCCTGCTTCACTTTTCAATATCACAGTTGCTTCTCTTCCTCTCTCA TTTGCTGTGTTCACACTTCACATGTTGGTTCTCCTTGAGAAAGGACAAATCCACTTCCTCCAACACGTGCCTGCACAGGA GAAGCGGTGCT
CDS sequence (LotjaGi6g1v0003500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACTCGCCGCGGCGGCGGAGGCGACGCCGCCCTCAGATCCACCACCAGGTCCGTCACTCCTCTCTCAACCTCCAC CGAAAAGGACAACAACAACAACCCTCGCAGATCCACTTCTCGCGGATCCGGATCCACCCACAACCCGACCCATAAACCCG TCACCAAACCCGTCCCTCGCGTCGACCGCAGATCTTCCTCCTCCTTCTCCTCGCTCCCCCGAGGCCGAAGCCCCAGCCCC TCCGACCTCCGCCAAACCCGCCGCGTCTCCGTCGACCGGGCCGCCAAGGACCCCACCCACCTGAAGCGCCGCGGTGATCC GATCGGTAAATCAGCCGAGAAACCCAGCCGCAACGAAAAGTTGAAAACTTGCTCGAAGGAAAGTGAAGAGAAGGACAAGT ACCCTAGCAGGCTTCACGAGAAGCTTGCGTTTTTGGAAGGGAAGGTGAAGAGAATTGCCTCTGATATCAAGAAGACCAAG GAGATGTTGGATATGAACAACCCTGATGCTTCAAAGGTCATACTTTCTGATATTCAAGACAAGATCTCGGGTATCGAGAA GGCCATGGTTCGTGTCGTTTCGACCGAAAATGAAAATGATAATGGTGATAATGGTAGCACCAGCAAGCAATTGGGTGTGT GTGTTGTTAATGTTGATGACAATGATGGGGTTGAAATTGAAACTGAGAAAGGTAAGAGCTTGGTCAAAGGGTTGAACAAT GAGGAGCTTGAGGCCAGGTTGTTTCCTCATCAGAAGCTGCTTCGGGATCGGACAGTGAATAAGGACTGTGTGAAGGTGGA AGATGAGGTTTTGAGCCTTGTTGATGACAATCCGATCGCGGTTGAGTTCTTGGCTTCTCTTGAAAAAGGGAATGGAAAGG TTGATGCTTGTGGTGGTGGCCCTTCTGATGGGAACAAGGCTTCTGCTTTGAACAATCAAAAGTATGACATTGATCTTCTA CTAGCTGCTGATGAGAAGCTTGAGGAGTTTGATGATCAGGAGAACAAGCAAGGGATGTTTGTGGAAGAGGAGATTGATGA GAATTTCAATTTCAAACTGAATGAAATAGGGAACAAAACCGCGGCTGCTGGATGGTTTGTCTCTGAAGGGGAGGCTGTTC TTCTTGCTCATGATGATGCTTCCTGCTCTTATTATGATATTGCCAATTGTGAGGAAAAAGCTGTATATATGCCACCGCCT GGAGTTTCAAGTAATGTATGGAGAGATTGCTGGGTAATTCGTGCTCCGGGTTCAGATGGTTGCTCTGGAAGATTTGTAGT AGCTGCCTCTGCTGGCAATACAATGGATTCAGGCTTTTGCTCGTGGGATTTTTACACCAAGGAAATTCGAGCTTTCCAAG CTGAGTCTGGAACAACCTCCTCAAGAACAGCACTTCGACCATTGCCTAATAACCTTGTGCAAAGAAGGAATTCTGCTGCG TCTTGCATTATGCCAGCAGAAAGGCAATGGTGGTATAAACCCTGTGGACCTCTTATCATCTCTACTTCCAGCTCACAGAG GAGTATAAAAGTTTTTGATGTTCGTGATGGAGAGCAAATCATGAAGTGGGATGTTCAGAAGCCTGTTCTGGCCATGGAAT ACTCCAGCCCCTTGCAGTGGAGGAACAGAGGAAAGGTTGTGGTAGCTGAAGCTGAATCCATTTCTTTGTGGGATGTGAAC TCACTCAGTCCGCAGGCTTTGCTCTCTGTTCCTTCTGGTGGTCGAAAAATTTCTGCTCTCCATGTGAGCAATACTGATGC AGAGCTGGGTGGAGGGGTTAGGAAAAGAGTAAGCTCATCAGCGGCTGAAGGAAAAGACGGTGTGTTCTGCACTTCAGATT CTATCAATGTCTTGGACTTTCGCCAGCCATCCGGCGTGGGCCTCAGAATATCAAAACTTGGTGTCAATGTGCAATCAGTT TTCTCTAGTGGAGATTCCGTCTTCCTTGGATGCACCAGCTCAAGCTCAATGGGCAAGAAGCAGTCCTCATCACCACAAGT TCAACAATTTTCGTTGCGCAGACAAGCACTGTTTAGCACTTATGCTCTTCCAGAGTCCAGTGTACATTCCCATTATGCAG CAATCAGCCAAGTTTGGGGTAATTCTGACTTTGTCATGGCTGTTAACGGCCTAGGACTACATGTGTTTGATGCGCAGAAA GATGATCCATTAAGGGTTCTCAATCTCAATATGGATTCGTCCTCCAATGCTCAAAGTTTGAGGGAAGTTGTTGGTCCAGA TGACTTGTATTGGCCTTCATTTGATTATCTGGGTTCTCGTGCTCTTCTGATCTCCAGAGATAGACCAGCTATGTGGAGGC ATCTTATAGTTTGA
Protein sequence (LotjaGi6g1v0003500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTRRGGGGDAALRSTTRSVTPLSTSTEKDNNNNPRRSTSRGSGSTHNPTHKPVTKPVPRVDRRSSSSFSSLPRGRSPSP SDLRQTRRVSVDRAAKDPTHLKRRGDPIGKSAEKPSRNEKLKTCSKESEEKDKYPSRLHEKLAFLEGKVKRIASDIKKTK EMLDMNNPDASKVILSDIQDKISGIEKAMVRVVSTENENDNGDNGSTSKQLGVCVVNVDDNDGVEIETEKGKSLVKGLNN EELEARLFPHQKLLRDRTVNKDCVKVEDEVLSLVDDNPIAVEFLASLEKGNGKVDACGGGPSDGNKASALNNQKYDIDLL LAADEKLEEFDDQENKQGMFVEEEIDENFNFKLNEIGNKTAAAGWFVSEGEAVLLAHDDASCSYYDIANCEEKAVYMPPP GVSSNVWRDCWVIRAPGSDGCSGRFVVAASAGNTMDSGFCSWDFYTKEIRAFQAESGTTSSRTALRPLPNNLVQRRNSAA SCIMPAERQWWYKPCGPLIISTSSSQRSIKVFDVRDGEQIMKWDVQKPVLAMEYSSPLQWRNRGKVVVAEAESISLWDVN SLSPQALLSVPSGGRKISALHVSNTDAELGGGVRKRVSSSAAEGKDGVFCTSDSINVLDFRQPSGVGLRISKLGVNVQSV FSSGDSVFLGCTSSSSMGKKQSSSPQVQQFSLRRQALFSTYALPESSVHSHYAAISQVWGNSDFVMAVNGLGLHVFDAQK DDPLRVLNLNMDSSSNAQSLREVVGPDDLYWPSFDYLGSRALLISRDRPAMWRHLIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 135 | 135 | - | – | |
| MobiDBLite | 14 | 52 | 39 | - | – | |
| MobiDBLite | 61 | 85 | 25 | - | – | |
| MobiDBLite | 86 | 135 | 50 | - | – | |
| PANTHER | 114 | 775 | 662 | 0.0 | – | |
| Gene3D | 304 | 624 | 321 | 2.1E-7 | ||
| SUPERFAMILY | 494 | 730 | 237 | 1.7E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0003500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…