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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0004400 |
| Transcript ID | LotjaGi6g1v0004400.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NADH oxidoreductase F subunit; TAIR: AT5G08530.1 51 kDa subunit of complex I; Swiss-Prot: sp|Q9FNN5|NDUV1_ARATH NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; TrEMBL-Plants: tr|G7I3R9|G7I3R9_MEDTR NADH-ubiquinone oxidoreductase 51 kDa subunit; Found in the gene: LotjaGi6g1v0004400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:869088..870741) extracted from Lotus japonicus Gifu genome v1.2.
GGATTGTCTGAAAACTGTTATGTATTTTGATTATTTGCTTTTGAATTCCCATTTGGGTCTGATTATTTATTTCAAAACAT GCTTTTGAGTTTTGATTTTAATTGATTTGATGATATCTAGCTATGATTTGCATGGATTAATCCAGGATATTTTGTTCTAA ATCTTGAAAATTATTGTTAGGTAAGGCAACCATGAGGGGAATTCTTTCCGTGACCAAGGCAACCTTGGCTCGACATCAAG GTGAGAAGTTGGGCCTTGGTTTAAGATTATTCAGTACTCAGGGTGCTTCAACTGCTACTACTCCTCAGCCCCCACCACCA CCTCCACCACCAGAGAAAACCCATTTTGGTGGCCTTAAGGATGAGGACAGGATTTTTACCAACTTATATGGGATTCATGA CCCTTTTCTCAAAGGTGCCATGAAACGGGGTGATTGGTATCGAACTAAAGATTTGGTAACTAAGGGCACTGATTGGATTG TCAATGAGATGAAGAAGTCTGGCCTCCGTGGACGTGGAGGTGCTGGTTTTCCTTCTGGCCTCAAATGGTCTTTTATGCCC AAAGTATCTGATGGCCGCCCTTCTTATCTTGTTGTTAATGCTGATGAAAGTGAGCCTGGAACTTGCAAAGACAGGGAAAT TATGCGTCATGACCCGCATAAGTTGTTAGAAGGTTGCTTGATTGCTGGAGTAGGAATGAGGGCAAGTGCTGCATACATCT ACATCAGGGGTGAATACGTAAATGAACGTATAAATCTTGAAAAGGCTAGGAAGGAGGCTTACGCCGCTGGTTTACTGGGT AAGAATGCTTGTGGCTCAGGCTATGATTTTGATGTTTATATCCACTATGGTGCTGGAGCTTATATTTGCGGTGAGGAAAC AGCCCTCTTGGAGAGTCTTGAAGGGAAGCAAGGTAAACCAAGATTAAAGCCACCGTTCCCAGCTAATGCAGGGTTGTATG GCTGTCCCACCACTGTAACAAATGTGGAAACTGTGGCTGTTTCTCCAACCATTCTAAGGCGTGGTCCTGAATGGTTTGCT AGTTTTGGTAGGAAGAACAATTCTGGGACTAAGCTGTTTTGCGTGTCAGGGCATGTTAACAAGCCATGCACTGTTGAGGA AGAAATGAGTATACCACTGAAGGAGTTGATAGAGAGGCACTGTGGAGGTGTTAGAGGAGGATGGGATAATTTACTTGCTG TAATTCCAGGAGGATCATCTGTTCCACTGCTTCCAAAGCATATATGTGATGATGTTCTGATGGATTATGATGCATTGAAG GCTGTCACGTCAGGGTTGGGGACTGCAGCCGTGATTGTGATGGATAAGTCTACTGATGTTGTGGATGCTATTGCAAGGCT CTCCTACTTCTACAAGCATGAAAGCTGTGGGCAGTGTACACCCTGCAGGGAGGGAACAGGATGGCTTTGGATGATCATGG AAAGACTGAAAGTTGGGAATGCCAAACTAGAAGAGATTGATATGCTGCAGGAGGTGACTAAGCAAATTGAAGGGCACACA ATCTGTGCCTTGGGAGATGCTGCTGCATGGCCAGTGCAGGGTCTTATCAGGCATTTCAGACCCGAGCTTGAGAGAAGGAT TAAAGAGTATGCACAAAGGGAGTTGCTCCAGGCTACTGGTTAGACTTATACTAA
CDS sequence (LotjaGi6g1v0004400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTTTGATTATTTGCTTTTGAATTCCCATTTGGGTAAGGCAACCATGAGGGGAATTCTTTCCGTGACCAAGGCAAC CTTGGCTCGACATCAAGGTGAGAAGTTGGGCCTTGGTTTAAGATTATTCAGTACTCAGGGTGCTTCAACTGCTACTACTC CTCAGCCCCCACCACCACCTCCACCACCAGAGAAAACCCATTTTGGTGGCCTTAAGGATGAGGACAGGATTTTTACCAAC TTATATGGGATTCATGACCCTTTTCTCAAAGGTGCCATGAAACGGGGTGATTGGTATCGAACTAAAGATTTGGTAACTAA GGGCACTGATTGGATTGTCAATGAGATGAAGAAGTCTGGCCTCCGTGGACGTGGAGGTGCTGGTTTTCCTTCTGGCCTCA AATGGTCTTTTATGCCCAAAGTATCTGATGGCCGCCCTTCTTATCTTGTTGTTAATGCTGATGAAAGTGAGCCTGGAACT TGCAAAGACAGGGAAATTATGCGTCATGACCCGCATAAGTTGTTAGAAGGTTGCTTGATTGCTGGAGTAGGAATGAGGGC AAGTGCTGCATACATCTACATCAGGGGTGAATACGTAAATGAACGTATAAATCTTGAAAAGGCTAGGAAGGAGGCTTACG CCGCTGGTTTACTGGGTAAGAATGCTTGTGGCTCAGGCTATGATTTTGATGTTTATATCCACTATGGTGCTGGAGCTTAT ATTTGCGGTGAGGAAACAGCCCTCTTGGAGAGTCTTGAAGGGAAGCAAGGTAAACCAAGATTAAAGCCACCGTTCCCAGC TAATGCAGGGTTGTATGGCTGTCCCACCACTGTAACAAATGTGGAAACTGTGGCTGTTTCTCCAACCATTCTAAGGCGTG GTCCTGAATGGTTTGCTAGTTTTGGTAGGAAGAACAATTCTGGGACTAAGCTGTTTTGCGTGTCAGGGCATGTTAACAAG CCATGCACTGTTGAGGAAGAAATGAGTATACCACTGAAGGAGTTGATAGAGAGGCACTGTGGAGGTGTTAGAGGAGGATG GGATAATTTACTTGCTGTAATTCCAGGAGGATCATCTGTTCCACTGCTTCCAAAGCATATATGTGATGATGTTCTGATGG ATTATGATGCATTGAAGGCTGTCACGTCAGGGTTGGGGACTGCAGCCGTGATTGTGATGGATAAGTCTACTGATGTTGTG GATGCTATTGCAAGGCTCTCCTACTTCTACAAGCATGAAAGCTGTGGGCAGTGTACACCCTGCAGGGAGGGAACAGGATG GCTTTGGATGATCATGGAAAGACTGAAAGTTGGGAATGCCAAACTAGAAGAGATTGATATGCTGCAGGAGGTGACTAAGC AAATTGAAGGGCACACAATCTGTGCCTTGGGAGATGCTGCTGCATGGCCAGTGCAGGGTCTTATCAGGCATTTCAGACCC GAGCTTGAGAGAAGGATTAAAGAGTATGCACAAAGGGAGTTGCTCCAGGCTACTGGTTAG
Protein sequence (LotjaGi6g1v0004400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYFDYLLLNSHLGKATMRGILSVTKATLARHQGEKLGLGLRLFSTQGASTATTPQPPPPPPPPEKTHFGGLKDEDRIFTN LYGIHDPFLKGAMKRGDWYRTKDLVTKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGT CKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERINLEKARKEAYAAGLLGKNACGSGYDFDVYIHYGAGAY ICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVNK PCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVTSGLGTAAVIVMDKSTDVV DAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRP ELERRIKEYAQRELLQATG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 48 | 68 | 21 | - | – | |
| PANTHER | 48 | 493 | 446 | 2.5E-243 | ||
| MobiDBLite | 52 | 66 | 15 | - | – | |
| SUPERFAMILY | 73 | 309 | 237 | 2.75E-84 | ||
| TIGRFAM | 77 | 486 | 410 | 4.1E-191 | ||
| Pfam | 116 | 285 | 170 | 3.4E-46 | ||
| Gene3D | 121 | 300 | 180 | 9.4E-82 | ||
| ProSitePatterns | 236 | 251 | 16 | - | ||
| Gene3D | 301 | 397 | 97 | 4.2E-43 | – | |
| SUPERFAMILY | 310 | 395 | 86 | 6.41E-24 | – | |
| Pfam | 312 | 361 | 50 | 4.1E-8 | ||
| SUPERFAMILY | 396 | 489 | 94 | 5.1E-35 | ||
| Gene3D | 398 | 498 | 101 | 2.3E-38 | ||
| SMART | 400 | 445 | 46 | 1.4E-24 | ||
| Pfam | 402 | 484 | 83 | 9.1E-29 | ||
| ProSitePatterns | 413 | 424 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | NADH dehydrogenase (ubiquinone) activity | Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol. | ||
| Molecular function | FMN binding | Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. | ||
| Molecular function | Oxidoreductase activity, acting on NAD(P)H | Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor. | ||
| Molecular function | NAD binding | Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0004400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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