Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0005000 |
| Transcript ID | LotjaGi6g1v0005000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); TAIR: AT1G07090.1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640); Swiss-Prot: sp|Q9LMK2|LSH6_ARATH Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6; TrEMBL-Plants: tr|A0A151T1R8|A0A151T1R8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0005000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:981682..985344) extracted from Lotus japonicus Gifu genome v1.2.
AAGCCCTAAAGGCCAAAACACAGCTTCTTCCTTTCTCAATTGCACCCTTCTCTCTCTTCTCTATTTGCTTGGGGGGTCAT AGGAACCCAGTTGCTTCCCTTTTTCCGGAAATAAAAATCTACCAATTCCTAAATATGTTTTCAGAAAAACAGGGTTAACA AAAAGCACTTCACAATTCAAACATCTTCAAGTTGTTCATTCTAGGAGTTATAACAAATCAAAAACCAAAGGAATTGAAGG AACCCTCATAACAAAACAGCTTATAGTCTCCTCCACTGTTCTTTTACCCTACCCTTCAATTCCCACACACACCCTCTCTC TGTCCTATAATATTATCATAACCATTCCATCTTCCTTCAAACTTCAAACTCTCTCTCTTTCTCTCTCTCTATGAACCATA GTTTAATTCTTCCTTGCTCAAATCTCATCCAAGTTTTTTTTATTTCTTTTTTCTTTATAAATCATTCTTCCTTCTATTTA CTTCTTCTCTTGTCAGGATTTTTTATGGGATAAGACTTTTAATTTGTTGTTGTTTTTACTGCTTCTTTATGCTTAGATTT CACTCTCCTTCTTGTATCATAATCCCCAATATATAGTGAGATTGAAGATCCAATCTAACTAGCCAATTAACCATGAATTC TCTTCAAGAATTTGAATCATCACCAAACCAGGACAACAAAGGCATCAGCACAACCATCACCAACATAGCAGGGAGCAGCT CCAATTTGATGATGACTATGTCTTCATCAGCCTCATCATCATCATCAACAACAGCAGCAACATCATCACCACCATCAACA ACTCCGAGCCGCTACGAGAACCAGAAGCGAAGAGACTGGAACACGTTTGGCCAGTACCTTAGAAACCATAGACCGCCACT GTCGCTCTCACGCTGCAGCGGCGCTCATGTGCTTGAGTTCCTAAGGTACCTTGACCAATTCGGGAAGACAAAGGTTCACA CACATGTTTGTCCATTCTTCGGACACCCGAACCCCCCTGCACCGTGTCCATGTCCCCTGCGCCAAGCGTGGGGGAGCTTG GACGCGCTGATAGGGAGGCTCAGGGCTGCGTTTGAAGAGAATGGAGGGAAGCCGGAGGCGAACCCTTTCGGTGCTCGAGC GGTGAGGCTCTACCTTCGTGAAGTGCGTGACTCACAAGCTAAAGCCAGGGGAATCAGCTACGAGAAAAAGAAGCGCAAGC GTCCACCTCACCCACCACCACCTCCTGCGGCGTTGCCACCATCAAATGGAGCAAGAGCAACTCACTAGTGTAAGACTTCA ACTTCCTGCGCTACGTAGCCAAATCATTAAGTCAATCTGGTCATATTTATGCATATTATATTTATAGTGTTGAATCAACT AAACTTTTTTATTTAGTACAACGAGAAGAAACAAGGATAAAATCCTACATATGGTTACATTACATATGTTTTTATAAAGT TACCTAACTTCACAGTTCACACTTATTTACATTTACATAACAGAGTTAAGAAAAGAAGAGAGAATTAAAAAATATGGTTA ATGATGTAATAAAAATTATGAGAGATGAGAAGTAAAATCAAGTGAAAATGACGTGGAGAAAAAAACTTAATGTAAACATA TCATTATTTTAAAGTTATACATACAGAAAAATACAATTAATAGTGCAAATATCTAAATAGACACATTTCATACACTTTAA TTTTTCTTCAATTTCATCTTAACAATGTTCTGTTGGATGTATGCGTATGAATGTCTATCAAACATTTTTTATATCATATA TGATGTGAGAATTTCACTATCTCAAAATCTTAAGCTAATGTATATATGTTTATTTAAGTGCTTTTTCTTAAAAAAGTGTG TGGTTATAAAAAGATTGTATAATTAGTCCTAAAGTTGTACGTGTAGTATTTAATTTATGTATAACCATGAATAATTTTCT CTTAATTAATAATTATAAGAGCAAATAAGAATAAAACACTAGATGTAAAAAAAAAACACTAGCTAGATCACATGCAAGGC TCTTGTATAAAATGAGAATTCAACTATCTTAAAACTTAAAGTTGATTACTGTGTTTGAAAGAAAATTTGATTAATGAAAA TATATATGAATGAATGGTTCTATAAATATCTAAAATACTATTTGGTTTCACAATTAAATTTTCTAAGTGTGAATTTTTTA TTTAGAAAAATGAATAAAAATAGAAAAAAATCAAACTATCTTAAAGACATATGATATGATATGGGTGGATAGTTCTTATA TAAAACTGTATATTTCATATAAAGGCTTGCTCTCAAAAAAAAAAAATGCTCTCAAAAAAAATATTTCATATAAAGGCTTA ATTTTGATGCAGTGTAAATATTTTTACACTATCAACCAATCAAATTTTAAAGATAAGCACACCAAATAATTGAATTAAAT AAGAAAATATTTTTTTCACATTTTTGAAATGTGATTAATTAGTTGACAATATCAAAAACCTTTATATATACTACTTAACC TTTTCTAGTAGATATATAGTTGTCATAAAGATTTTCTTTTGGATGTTTGGTATTGGGCTGTGAAGTAAGATACGCTCTGT GAAATCCTATAATTAACCTTTCCTGGTCGATTGCATACCTTAAATATAATTAATATATGTGTTCTTTCTTTTACTGCTAT TATTTATGATGCAGAAGTAGTAGTGATCTGAGATGGGGTTACTGCAATGTAAGATATGCTCTGTGGAACTTGAATCAAAA ACATGCAATGGAACCTGCAGTTACTGGTAGAAGAAGCAGTGATAGAGTAATTTGAAGAAGAAGAAGAGGGTACTACAATT GTGTTACCTATTATTCACCGTCAAATTTGTAATAAATATGTGTGTGTACTTGAAGGTGGGTCATTTATGACGATTAATGG ATTTTGCAGATCATGTTCCATTCCATGTCTTCATTGGATGCGGTAAATGCAATTTCTAATTTCTTGTGTATTCTTTTTTT ACCCCTTTTTAATTACTTGTAACGTCTAGCACCTAATCATCCACTGGTTTGGTTTATGTTCAATCAAGCTAGCTAGCTAG CTTTTATTCACTATCTATGTCATGGTGTTTTCGGTCTTTCTTTTTGTGTTTTGAGTTTTCAGAAGCCATAGGGGGGCCAT CCTGGTAGCTTTATCAGTTTCCCTGTTGAGAGTTGAATTCAAGGGGGATTAATTTCATGTTGTTTTTGGTTCCTCATAAA TATAGAAACTGTAGATAGTGAGACTGGACAATGCTTCAAACTGTCATGCAATTGGGAGCATCATGTTTGCTAGTAGTAAT TACTATTTCTTTGGAGTTTGAGCACCTTTGAGCAACTCAAACTCTCTCCCCTTTTCTCTTTTTCAAGTTTCTGATGACTT CTCCTACTTCAGCGGGAGTAAAATTGAAGAGACGGTTCTCGGTGAACTGACAATGAATAATGTTTCACTTTACAATGTAA AGTATGATTCTAATCTGTCATCGGTAGGAAATTTTTCTGGTTATTCTAATTGCATTCTTGAATCAACAATGTTGTGATGA CGTACTTTGATAAATAAGAAGATAAATGAATATGTGATGTGATAGAAAATACAAAGATAGATAGAAAAAAATTGTGAAAA TGAGATGAAAGAAAAAGTGAATTGAAGTATGAATGAATCGTTACCCTTATTATATATATTTAG
CDS sequence (LotjaGi6g1v0005000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCTCTTCAAGAATTTGAATCATCACCAAACCAGGACAACAAAGGCATCAGCACAACCATCACCAACATAGCAGG GAGCAGCTCCAATTTGATGATGACTATGTCTTCATCAGCCTCATCATCATCATCAACAACAGCAGCAACATCATCACCAC CATCAACAACTCCGAGCCGCTACGAGAACCAGAAGCGAAGAGACTGGAACACGTTTGGCCAGTACCTTAGAAACCATAGA CCGCCACTGTCGCTCTCACGCTGCAGCGGCGCTCATGTGCTTGAGTTCCTAAGGTACCTTGACCAATTCGGGAAGACAAA GGTTCACACACATGTTTGTCCATTCTTCGGACACCCGAACCCCCCTGCACCGTGTCCATGTCCCCTGCGCCAAGCGTGGG GGAGCTTGGACGCGCTGATAGGGAGGCTCAGGGCTGCGTTTGAAGAGAATGGAGGGAAGCCGGAGGCGAACCCTTTCGGT GCTCGAGCGGTGAGGCTCTACCTTCGTGAAGTGCGTGACTCACAAGCTAAAGCCAGGGGAATCAGCTACGAGAAAAAGAA GCGCAAGCGTCCACCTCACCCACCACCACCTCCTGCGGCGTTGCCACCATCAAATGGAGCAAGAGCAACTCACTAG
Protein sequence (LotjaGi6g1v0005000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSLQEFESSPNQDNKGISTTITNIAGSSSNLMMTMSSSASSSSSTTAATSSPPSTTPSRYENQKRRDWNTFGQYLRNHR PPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHVCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFG ARAVRLYLREVRDSQAKARGISYEKKKRKRPPHPPPPPAALPPSNGARATH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 49 | 49 | - | – | |
| PANTHER | 11 | 208 | 198 | 5.4E-106 | – | |
| PANTHER | 11 | 208 | 198 | 5.4E-106 | ||
| MobiDBLite | 34 | 60 | 27 | - | – | |
| MobiDBLite | 34 | 66 | 33 | - | – | |
| Pfam | 51 | 173 | 123 | 3.9E-66 | ||
| ProSiteProfiles | 60 | 187 | 128 | 86.805 | ||
| MobiDBLite | 174 | 211 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0005000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…