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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0006200 |
Transcript ID | LotjaGi6g1v0006200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT4G14410.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8L467|BH104_ARATH Transcription factor bHLH104; TrEMBL-Plants: tr|I1NER6|I1NER6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0006200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1269442..1273928) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAACCAAGTTGTATGTGCAACATTTAATATTTATTCTATCTGAAATAATTGTTATTATTTGCTTCGGAATGGTAGAA GGTTGTTTTCTCGCAGGTAGGTAGGTGGTGGTTTGATTAAAGTGGAAAGCGCCCCGCAAATGGATTCCTTAGAAGACAGC GGCTGTTGGGATTTCCTCGATTACTCCTTCCTTGATCCTCCTCCCACCGATTTCCTCTGGTCCAATCCCAATCAAAGGTC TAATTCTTCTTCTTTTTTCGATTCACTGTTCATTACAATTCTGCGAAATGGTGAAGCATAACATCACCCTTTTCTTATGG TAATTCATCATGTTGTTGATTTTTTTATGTTTTTGGAATTTGGTGTTACCTGCTTGGATTCATATTTTCTCATACACCCA ATTCTTAAATTCTATTCAAATGCTTCCTTGGAAAAATTAAGTTTTTGTTATATTAATATTAATATTAATAAAAAGGAAAA ATCAAGTTTTTTTTTAATCATTTTTGGATTTTCTCTATTGCCCCTTTGTTGATTGTAATCAAAAGGGTTGGTTGTTCTTT GGAGTAGTTCAAAGTTCATTTTAATTGTTTCTTCTCTTCTGGGTAAACTGGTATGCTGCAAATTTAGTTTTTGAATTTGA TAGAGGCAATGATATGGATTGGTCTATGTAGCCGAACTCGGAGAGTGGCATAAGGCGAGTGATTGCCTTCGCTGATCCAA AGGCGCTCATTAGGCGCACGATAAAAATAAGACCACTAGAGACTTCATGCTTGTTGTTGGTGCTTATGTTTTGTGTGGCA AACCTGACTGATACAACTATTTTCCTGTATTTGCCAGTGTGATCGCGGAAGCCGACTTTCCTAGTGTTGCTGTTGCCAGT CAAGAGAACACCAGGAAGAGGTATCTTGTCTGTTTCTTATGAAGTGATTTACTGTCTGAGAATGTGAGGATTGATAGTAT AGTCTTGAAAAATTGGGAATATATTATTTTGATTTTATATAAACTCGCTTTTAGTTATCTGAAACTACATTCATTAACAT GAAAAATCTAAACTTCAAACCATCCATCATAAGGCCACATGAATCTGGTAGATAGAGTCTAAACTCTGAATCACCTTATT CTGTTGCATTACAGTGTTTAACTTATAGATGGATTGGGTAACCCTTTTATTTTGTTTTGAAAGAGTAATGATGCAATCTT TCGAATCGTGTTACAGTTTGGTTTTTGTAATAAATTTCCTGAGAATCATTTGTAGGGGGCGCACTGATTCATGCTGCAAG GCGGGAACAAAAGCCTGCCGTGAGAAACAACGGAGGGAGAAACTCAATGAAAGGTAATTTGTGGTTTGATATCAAAGTTA GTCTTCAACGTGCTGCTTCTCTTGCTTTTCATGTAGCTGTTGTGGCTTATGATGAACATCATTTTGCTACGTTTGCATAC GAAATATATCCTGTGACCAGTAATTTATGTCAGAAGTGATATTAGTTCTTAGATATTCTAAGTTACCTAGGTCTAAGAGA TGCCTGTGTCAAACACCTCCTCAATGTTTTCTAGTGTATTTTGCTAGTTCTTTTAATGGTAAAGGGGAAGAACTTGGTTG TAATTATTGCAGGTTTTGTGAATTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAAACAGATAAGCCAGCTATACTTG ATGATGCTATCAGAGTCTTGAGCCAACTTAAAACTGAAGCTCAGGAACTCAAAGAAACAAATGAGAAATTATTGGAGGAA ATAAAATGTTTAAAGGTCAGTAAGTATTGCATCAACCATTTATCATAGTGATATGTATATTTCATTTCTCTTATTTTTTA TATTTCTTGGATTAATTTTCTTTTAAATGTTATCTTGTTTACCTACTAGTCTACTACATTTGTGAAATCTCACTAAATGG TCTTCAGAATGAATGGTTTTTATTTTAGTTCAACTGCTAGAAGCTTCATCTTTAAATGATTTGTTTTCCCTATTTTGAAT TATAGTTCACAAGGAAGGCATACTCTAAGCTTCACTTTTAGATTAATGGTCAATTCATGGCACTGCTAAAGTTAGTCCGT TTGGCTAGTGCCTAGTAGTAGTGTTGAAATTATATGATTTTTGATGCAAGGACTGATGTAGAAATATACACAGGAAAGCA TTAACTAACATGGTTTCCTCCAACGGGGTAAAAAAATAAAATAGAGATTTTGCAAATTAAGCAGTTAGTACAAATTGATA GAAGTTGAAGAGAAAAATATTGCCATGGCTAAGCCTATTTCATTATCATAGAGATCGATGTCATATACTCAATCTGAGTG ACATTTGCATTCCGTTGGCCCTACATTCTAGTTTGTTAGTCAAGTTCAACCTTTGTTCTAACTTCTAGCCAATATTGCAT ATTTTGCCATTGGTTTGAATGACTAACAGGCCTAGTCCAAGTTAGTAAATAAGTTGATTACTAACAATTACACATACAGT TTAGTTATGTTTTATCAACTCTCACATTAAGTTCCAAATTTGTTATTGCATATATAATTTTAGATTTTTTTCCTTGCTTC ATTGAAGAAAGGAACCTTACGACTTCAAAGTCTGAAATAGAATAGAAAGTTCTATTGCAGTATTTAAGTTCTGTGATCAG TATAGAAAAGCTATTGTCTAATGAGTTTAAGAAGTGGTGACCCCAAACATCAAGCATAAATGAAGGAAATTGATTCTTGA GGACTCATTGGAGCTTGATTGAGGGTTGATATATTGACAACTAAGCATAGTATGAATATAGACGAGGGATAGAAGCAATT TGTGCTTCAACCTATACCCTTATATAGTTATATATCATCTCTCTGTGGAACTCAATTAGACACTGATTTTTTGGATCTGT AACTCCTTTCTCAAGGAAGTTAAATCGTGGACATGGCTTGTAATCATGGCCTATCTAACATAAACCACCAGTTGCCTCTG ATAGCCTTTCAGATATTACTAATTGCGGCTGACTCTGCAGGATATTGTCACTCCTTCCTCATATGCACATATTTCTGTTA CATAAGCCGTTTATTCTGGCAGTTGGCCATTTTACCAAGGCCTGCTTTGCTTAGATGTGGATTTGAAAATATCAGTTTTG GGATAATCATATACCAACAATGGTGAGGCAGCTATAGTTTATTAGAAATAAAACTTAAAAATCATTCATGTCTTCACCCA AGTGTTTAAGCTATTGGAGCAGTTGGTTAATGACATGGTATTTGACCAAGTGCTCCCATTTTGATCCTTGTTGCCCCCAT GAGTTTCACAAGGTAAGTGGGCATGTGCATTGTCCACACTTCAACCCTAATGAGCTATTACATGAAGGGGTAGGTTAGAA ATATAATATAAAAATCATTCATGTGTCTCCACCCAACAGTTCTAAGTTTTGGGATAGCTGATTCATGACATGTTATTAAA ACTTCTGCAACTAAGGGGTCTGGAGTTTGATCTTTATTGTCCCTCATGATTTTAATAAAAGTTGAATTTCAGCACGAGGT TAGTTAATATGTGCGTTATCAGCCATACTAGCGTTATCATCCTTGTCTAATAGGTACAAAATCTAACTTGTATGAAAAAA TTTCAGGTGTTCTATGAGTTAGATACATCAACAAGGGCATTGCATTGCTTGAGTGTTTGAGATTATATAATTCTTATTTC TGTAACAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTCTTAAAGCAGATAAAGAAAGGATTGAGAAGAAGTTG AAAGCCTTGCCCGTCTCAGCAGGAGGGTTTTTGCCTCCCCCTATGGCAGCATATCAACCAACGGTGAACAAGATGGCTGT TTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTTCATCTGCCCGAGATACATCCCACGATCATGAGCTCA GGCCTCCTGCTGCGTAGTTGCTTGTGTTGCTGCCCGTTGGATAATCCTCATATTCATCATTTTGACAACATTGTGGAAGC ATTGCATTGACATGTAAATTTTGTCATTGCTTGGATTTTTTTTAAAGATAGTAGTAACATGTCTTGATAGTCTTACAAGT ACAATCCTTTGTTGGTCTAGGTGATAACAAATTTATTCCTTTTAAATAAGGTGTCAAGTTTGAGTCCTGTGAATAGGTGT TGGGAGTGTTTCATGCGGGAAAAGCGAGTTTGGTTGACTCAACTCCAATTAATTGGGATTCAATATGAAATGTCAAGTGT CATTGACTGTTAAGCTTTGTAGTAATCTTTGATGGCAATAATATGAAAATTCTATAGATGTCCATCCAATTCAAATTGTC CTCTTACTTCAAAATTTAAAATTCAATGAAAATATAAGGTGACATTGGCATAGTATTTTGAAGTTTTTTCTGACATTATA TAATATTAAATTTATTTATGTTGGATGTGGGTGAGTACAATTTGGCCCATCACATCAATACAAGTCAATCTCGGGTGACC TATCCTA
CDS sequence (LotjaGi6g1v0006200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCTTAGAAGACAGCGGCTGTTGGGATTTCCTCGATTACTCCTTCCTTGATCCTCCTCCCACCGATTTCCTCTG GTCCAATCCCAATCAAAGTGTGATCGCGGAAGCCGACTTTCCTAGTGTTGCTGTTGCCAGTCAAGAGAACACCAGGAAGA GGGGGCGCACTGATTCATGCTGCAAGGCGGGAACAAAAGCCTGCCGTGAGAAACAACGGAGGGAGAAACTCAATGAAAGG TTTTGTGAATTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAAACAGATAAGCCAGCTATACTTGATGATGCTATCAG AGTCTTGAGCCAACTTAAAACTGAAGCTCAGGAACTCAAAGAAACAAATGAGAAATTATTGGAGGAAATAAAATGTTTAA AGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTCTTAAAGCAGATAAAGAAAGGATTGAGAAGAAGTTGAAAGCC TTGCCCGTCTCAGCAGGAGGGTTTTTGCCTCCCCCTATGGCAGCATATCAACCAACGGTGAACAAGATGGCTGTTTATCC AAACTATGGCTATATTCCAATGTGGCAATATCTTCCTTCATCTGCCCGAGATACATCCCACGATCATGAGCTCAGGCCTC CTGCTGCGTAG
Protein sequence (LotjaGi6g1v0006200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLEDSGCWDFLDYSFLDPPPTDFLWSNPNQSVIAEADFPSVAVASQENTRKRGRTDSCCKAGTKACREKQRREKLNER FCELSSVLEPGRPVKTDKPAILDDAIRVLSQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKERIEKKLKA LPVSAGGFLPPPMAAYQPTVNKMAVYPNYGYIPMWQYLPSSARDTSHDHELRPPAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 12 | 216 | 205 | 3.7E-99 | – | |
PANTHER | 12 | 216 | 205 | 3.7E-99 | – | |
ProSiteProfiles | 61 | 112 | 52 | 13.205 | ||
Pfam | 65 | 113 | 49 | 2.9E-9 | ||
CDD | 65 | 117 | 53 | 2.50265E-8 | ||
Gene3D | 65 | 144 | 80 | 5.1E-11 | ||
SMART | 67 | 118 | 52 | 2.5E-9 | ||
SUPERFAMILY | 67 | 139 | 73 | 8.64E-13 | ||
Coils | 102 | 157 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0006200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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