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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0007400 |
| Transcript ID | LotjaGi6g1v0007400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT3G09290.1 telomerase activator1; Swiss-Prot: sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1; TrEMBL-Plants: tr|A0A072VHQ4|A0A072VHQ4_MEDTR Transcriptional regulator superman protein; Found in the gene: LotjaGi6g1v0007400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1492181..1492942) extracted from Lotus japonicus Gifu genome v1.2.
CCATGCTTCTCTCTATATATAAAACCATCATCAACCATAAATTTACTATAATTTTGCTATCTGTAAAATCATAGATGGTA AGATCAGAGACTACTACTTTTAGTAAAGAAAGTGATCAACAAGAAGTTCAAGATTACTCTGAAGGGACCAAAAGATTATA TGATTGTACATTCTGTAAGAGGGGCTTCACTAATGCAAGGGCTTTAGGAGGCCACATGAATATCCATAGAAAAGAGAGAA CCAAGGCCAAGCAACGAATGCCCAATTCTTCTCTTGTTACACAAGTTTCAAGCCAATCCTCAAGCTATTTCTGCATTTTG GAATCTCCTAGGAACTATAACATGTGTCTTCAGCCATCAGCAACTAACCCTACATATCACCCACCCGCATACACTTTTCA ATATGATTTTCTTAACACAAGGTCTCAGTCCTTGATAAGGAATCGAGATGTATTGGGTACCAATTTGAGTCTCCAAATTG GTTCAAGTCATGTAGCTACTGATCAAGCTAGGAGGGGAATTGAGAGAGATGGTGAAGGGGTGGACTTAGAGCTCAGACTT GGTCATCATTTATACTCAGACTACTAAAGGCTAAAGCATATAGATAAATACAAAGTTCTTTTTTCTTGTTATGTTCATTA AGCATTTGTTTTGATGCTTATACTAAATATTCAATGATGAGTAGACATAAAAGAGCTAGTTTACTGCTTAAATTATGCGT TGTACAATCACATGGTAGCCGAAATTAGTTCATAATTGAAAC
CDS sequence (LotjaGi6g1v0007400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAGATCAGAGACTACTACTTTTAGTAAAGAAAGTGATCAACAAGAAGTTCAAGATTACTCTGAAGGGACCAAAAG ATTATATGATTGTACATTCTGTAAGAGGGGCTTCACTAATGCAAGGGCTTTAGGAGGCCACATGAATATCCATAGAAAAG AGAGAACCAAGGCCAAGCAACGAATGCCCAATTCTTCTCTTGTTACACAAGTTTCAAGCCAATCCTCAAGCTATTTCTGC ATTTTGGAATCTCCTAGGAACTATAACATGTGTCTTCAGCCATCAGCAACTAACCCTACATATCACCCACCCGCATACAC TTTTCAATATGATTTTCTTAACACAAGGTCTCAGTCCTTGATAAGGAATCGAGATGTATTGGGTACCAATTTGAGTCTCC AAATTGGTTCAAGTCATGTAGCTACTGATCAAGCTAGGAGGGGAATTGAGAGAGATGGTGAAGGGGTGGACTTAGAGCTC AGACTTGGTCATCATTTATACTCAGACTACTAA
Protein sequence (LotjaGi6g1v0007400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRSETTTFSKESDQQEVQDYSEGTKRLYDCTFCKRGFTNARALGGHMNIHRKERTKAKQRMPNSSLVTQVSSQSSSYFC ILESPRNYNMCLQPSATNPTYHPPAYTFQYDFLNTRSQSLIRNRDVLGTNLSLQIGSSHVATDQARRGIERDGEGVDLEL RLGHHLYSDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Gene3D | 6 | 80 | 75 | 7.0E-8 | – | |
| PANTHER | 10 | 165 | 156 | 7.0E-47 | – | |
| PANTHER | 10 | 165 | 156 | 7.0E-47 | – | |
| SUPERFAMILY | 26 | 56 | 31 | 8.48E-7 | ||
| ProSiteProfiles | 29 | 56 | 28 | 11.593 | ||
| ProSitePatterns | 31 | 51 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0007400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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