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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0009100 |
| Transcript ID | LotjaGi6g1v0009100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic; TrEMBL-Plants: tr|I3SDE1|I3SDE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0009100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1732351..1738023) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTTCAGCCAATAAATCACCCTAAACTAAACTCATTAATCTAAGAAGTCTTAATTTCTTATTTAGATTAATCATAGTC ATTGATTACAAAAAAATCAATGATCCTAGAATCATGCAAGAGGGGAGGTGCGTAGAGAATCTTTGTTACAGAGATCTAAA TTCCAAGAATTAACTCAAAATCAAGTGATGGAGGAAATCATCTAGATCAGAATTTAGTGGAGAGTTCCCTGCCTTGAATG TTGACTGCGAAATCTAAGGGAAAATCAAAGGTTATCTCTTCATAAACCAGACTCATATTTCCTATCACAAAATAGGTGTT GAAAAGTTATAATACGAAGGTCGCAATGCATGAGTTACCATAATCTTAGGGATAGTCAAAGGCTCATTTCATAAACCAGC CTCATGTTTCATAACCAAATAGCGTAATGCATGAGTTACCTAACATGCATTTGGCTATAAAAGGTTGTAGAACCCAAACA GTAAAACACAAGAACAATTAGCCAGCGGGAAGTTAAAAAAAAAGAGAAAAAAATTTGTTCAACTTCTAGATATAATTGAG TTGTAAGTGATTTTGTAAACACTGTGAGTTTTTTTTTTCAATACCATATCAGCAACAGTCTAAAGACGTCGAACTTCGTT CATGCATTAGGATATTGTGAGAAGGATATGGTGACTACTAACATACAATATGAGAAATTTAGAGTCCTTGATATAAATCA GAACTCTCAAATTTTTTTCAATTATGGCCACATATATATGAGATCGGAGTAACACTTGCCTCAAGCATCATACCAATGTC ACATTCGGTTTGGCTTTCTTCACCTAAGCCTCCAAGGATGAAAAATATATGATCTCTTATATAATCATGGTCCTCTCTAA TTTCTATACGTTCTAAAACTTTTTAATGCAGTCATACATAAGAGTATATTCTTCATCCTTGGGTATAGTTAAAGAAGTAC AAGTCCAATGTTACATTGGTATGATTCTTTGGCAAAATCCAATATTTCTATGACCTTAATTTTAAAAAATATTTGCGTGT CTTGATTTATATCAAGGTATATATGTTAGTAGTCACCAAATCCTTTCTCACAATTCAGTTGGAAGGCTCTAGGTATTTCT GTTTCAGCCGCAAGGGTTACAATGAAGAGAATGGTTCTAGGGGTTTAGTTCTCCAGCATGGAGGCTCTAGTTGCGAGCAG TGTCTTTGGCTGCGGTGTGAGCCGTAGTGACATGGGCTTGGCCGGAATGTGCTGTGTCTTGGTTGATGAGAGAAGGTACA CACACTCTTTATCTATAATTCTTCATTACTTGTGATATAGCTTCATGGAAATAGGGTTTGCGCAGGTGATTTGAATGGCA GAGGGTGGTTGTCAGGATTTGGTGGTTTGAGTTGAAGAAGGTTTGGGGTTCAAAGGTATGAGATTCTTCATTTGAGTTTC ACGGTGCAGGAGCTGGTACTCAATCGAAGGTTATGGAAACCTAGCTGAAGAAGCGATTTGTGGATATTGTGATAAATGAG AGAATGTATTTTTTGAGTGTTTCTCTTGTTTATTTTCCAAACTTTAGAAATTATTTGAGATTTTTATCATTTCGATGTCT ATGAATGTGCGTAACTCAGATGAACTAATATAATGAATCTTTCATGTCAACACTATTGCATAATACCCATAACCAAGAAT TTGATTGGATGAGAAAAATTCTGAAGTAAAAGATGAAAGTGAGTTTACTTGATGTTAGCTTCAAAGCGTTGCTTCTATTG CTTAGAATTTCTGACAAACCTCTCCTGCCCAGCTTCTATGCCTCTCCCAATCACCTCTGTTTTTCTTTTGAGAATCATAT CATGAAGGAGGCTATAAGCTTTGGTGCAGGTCTTATTGTGTCTGCCGTCATTGAGAACGAGACGACGATTAGGTTATGAC CAGGGTTTAACCTATATAAGGGTGTATTCTCAAAATAATATTTTGTAGGGGCCTTAACCAAAGTACTCATATTTTATAGG GACCTCCAACATATTTAAGCTTATTTTAAAAAAACTTAACATTATTAATTATATTTTCTTCTTATCTTCCTATGTTAAAA ATAGTAGGTAAATTATGTGGTACCTGATTTTTTTTAGGTGTGGTACCCGCATTAAGTAATTTAATAGATTATTATCATGT TATTCAAGGTAAATACTACATCTTTAAATTTTTCTTCACTTGTCAATTAATTTTATCTCACAAAATTCATTTTTTAATGG AAAATGAACGAGTGGTGAAAATGAATGATGGTGATGGACATGCGCGTAAAAATGATCATGGTTGATGGATAAACAAAGCT CAGAAAACACAACTCGCATATCTCATGTCCTTACGAATGGAACACTGCATTAATATGATAGAGCAAAATCAAAATTTTAA TCGATACATAAGTCTTTATTATTAAACAAACTCATTTTAGATACCATACCTTAATCTGACTTTTAGGTACCACACCAAAC ACAAAAAAAAATATGTGTTTCTTCAATTTCTACAAGTAAAGTTAATTTTTGAAACAAAGTTGTATCATGCAGTAGTTTAG ATTTAGAAAGAGAAGAGATACCCCAAAAAGTTGTGCCCATTACATGCAACAGATAAATAGCACATGAGTGTTTGTACATA GATCATAGATGTTGTATAGGAAATAGATGCCCTCATCTTATCTTGAGATATCAGATCCTTCCTATATCACTGGACAGTGG ACACAATCATGCCACCTCATCACAAAAACAAGACACAATCTACATCTCTCTATCTTTTTCTCTCTCTCTCTCTCTCTCTC ATCCCATCTTACTTGTTAAAGTGTCTTTATTACTTACACAGAGTTGCATCACCATTCACCACAATCACAACATGGCTGCC ACTGCTGCAGCTGCAGGCATAGCCTCTTCCTTGTTTTCTTCTTCCATCAACACCAATGTCAAATGTCTACGCTCCAAGAA CTGCTCCGTGTTGGCATCAGTGTCACAGTCCTACCTAGTGGAACCTTTGTCCATTGGTGGCACCATCTCACACAACAAGT TGTGGGTTCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGCACTGGCTGCTGAGGCAGATGATGGTTTAGTTGAA GAGAAAGTTGAGGAAGTGGTAGCAGAGGAAGAGGCTAATTCTTCTGTCAACACTAAGCTTTATTTTGGGAATTTGCCATA CAGTGTTGATAGTGCACAACTTGCAGGGTTGATTGAGGAATATGGTAGTGCTGAACTAATTGAGGTACCTAATTATATAT GTAACTCTTATCTATATTATCCCAAGTTATCTACATGAAGTCATGAACCAATTAATAGAATGTTAGTTAGGATCAACTTA TTTTCCTGAAAATCAATTTTGGTAATTAAAAGCTACTAATACTAGCTTCTGCCTAGAATTGATTTTGGCTTTAGAAACAA TTGTGGATGGATTTCCAAACATCCATGCACTGAATTGCTTCAGGTTGGATCAATAAAATTGTGCTGTGCATTTGTGCTCT ATGGTTTATGATCTTATGGCTGCAGCCCATTTGATTTTGTTGCATGATGTGATTTAATTGCTGAGGCTTTCTTGGTGATC GGTGTGTAACTTGTGAATGGATGGAGAAAAGTCTGCTTTTTTGGTTGTTGGTCTCAATAATGCATATACATCTATTGTGA ATTGATAGAGAGGAAAATAACTTGATTAAGGAGATGAGTTATATGTAAGGTTTTCATGGGATTCATCACTGGCAATGGAG TTTTTCTGAAAATCTGCAATAAAGTTTGGTGGACTTCTGCTTCATTTAATTACTTTACTTGTTTTGGGTAAATGACTAAA TGGTAATTAAGGGTCGATATTAGAATAGTAGCTTCATGGAAGTAGGTTTCTGTTATTCAGCTTTACAGTTTAAGTCTTTT GTAACTGGGCTCAAGTTTAGATTGTATGTCTAGAATTCGATCCTTGTTGCCCAATTACTCTAATAAAAGAGGAAAATTTT CATACAAGGTTATTGGATTTGTGCATTGTCCGCACTTCAAGTCCAATCGGCTATTGTGTCTGCGTGAGGGTGCGTGTTAA AAATAAGATATAAAACTATTCATGTGTCTTCACCCTATAGCTTAAGCTTTTGGGATAGTTGGCTCATGGCAATAATTAAG TGAATGATAGACATTGGTGACTTGATATGAAACTCAGATAAGAGACATCAAATAAGAAATTTTTACTCCATAATTTTTTG CATATGACTTTTCAGTATACATCCCTCAAAGTTGCAAGTCTTTAGAATCCAAATTGCATTTCATGATTTGATTATCCCGT GGTCCGTGGATGTGTTTCATTCCCTGATTTTCAGTTTTGTTAATGATTTATATATATATATATGTATATATATATATATA TATCTTTAGGTTCTTTACGACAGGGACTCTGGAAAAAGTAGAGGCTTTGCATTTGTGACGATGAGTTGTGTTGAAGATTG TAATACTGTCATCGAAAATCTTGATGGAAAAGTAAGAAACACTGCCTATCTTCCTTGTCTACCATATTTTCTCAAATCCT TTTCCATGCTTAATTTTGTAAATGAACTTTTCAGGAGTTCTTGGGCCGAACTTTGCGGGTGAACTTATCTGACAAACCAA AACCAAAAGAACCCTTGTACCCCGAAACTGAGCATAAGCTTTTTGTTGGGAACCTGTCATGGACAGTAACTTCTGAGAGT CTAATACAAGTCTTTCAAGAATATGGAACCGTGGTCGGAGCCAGGGTCTTATATGATGGGGAAACCGGAAGGTCACGTGG CTATGGATTCGTTTGCTATTCAAAAAGATCTGAATTGGAAACTGCCCTTATATCCCTAAATAATGTGGTATGTTACTTCT CATCTCCTCACTCTTGCGCATTCCATGTAAACAAGTTTTCTTAATTTTGCTTATTGCTTCTTTAAAAACTGTGGACTTCA GGAACTAGAAGGACGAGCAATACGAGTAAGCTTGGCGGAAGGAAAACGTTCATAAGGTTAACACTTCATAGAAACTTGGG AAGACTCTAGATGTTTACAAATGGCGCTGAAGAAATGAGAAGGCGATGCCCTATATGCATATCCCCATCTTCAGTTTGCT GAGGATTTCCAAATGCTGTTTCATTGTGTTAAAATCTTTATTGATACTAACATTGGCTATATGTTGCTTCCTTCTTGTCT CACTGGGAATAATACATTGATCACAGATTCTACTCTAATGTAACATTTCCTATGAAATATTTAGCACCTTAAGGTGTAAA GTATCGCACCATGGTGAAATGACGAGCATCAAATACAAATTTTTGCTGCAGAATTTGTAAATTAGTAACCTTAAGATACA GCAGAACATATAATGTTAGTAGAATGAAATCATTTTGGTTGCTTGCTTCCTGATGTACATATTTTAAACAGACTAGTGTG CGTGCATATGCTCAACTTTTATTGTGAACTGAAAATTGGTATCGAATCAACAGATAAACGCAATCAAACTACACATATTA CCAGCAGAAACATAATATGTTAGTTTTGTAATGATTGCAGTTCTTGGCATGCCAAGAACAATTGCTCCAAGACCTTCCAC ATTGATGCAGCAGGATATTATAGTGTGGTGAATAAATATCTCTGTTGAAATATTTGTAGAAGTGTTGAGGAAG
CDS sequence (LotjaGi6g1v0009100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCACTGCTGCAGCTGCAGGCATAGCCTCTTCCTTGTTTTCTTCTTCCATCAACACCAATGTCAAATGTCTACG CTCCAAGAACTGCTCCGTGTTGGCATCAGTGTCACAGTCCTACCTAGTGGAACCTTTGTCCATTGGTGGCACCATCTCAC ACAACAAGTTGTGGGTTCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGCACTGGCTGCTGAGGCAGATGATGGT TTAGTTGAAGAGAAAGTTGAGGAAGTGGTAGCAGAGGAAGAGGCTAATTCTTCTGTCAACACTAAGCTTTATTTTGGGAA TTTGCCATACAGTGTTGATAGTGCACAACTTGCAGGGTTGATTGAGGAATATGGTAGTGCTGAACTAATTGAGGTTCTTT ACGACAGGGACTCTGGAAAAAGTAGAGGCTTTGCATTTGTGACGATGAGTTGTGTTGAAGATTGTAATACTGTCATCGAA AATCTTGATGGAAAAGAGTTCTTGGGCCGAACTTTGCGGGTGAACTTATCTGACAAACCAAAACCAAAAGAACCCTTGTA CCCCGAAACTGAGCATAAGCTTTTTGTTGGGAACCTGTCATGGACAGTAACTTCTGAGAGTCTAATACAAGTCTTTCAAG AATATGGAACCGTGGTCGGAGCCAGGGTCTTATATGATGGGGAAACCGGAAGGTCACGTGGCTATGGATTCGTTTGCTAT TCAAAAAGATCTGAATTGGAAACTGCCCTTATATCCCTAAATAATGTGGAACTAGAAGGACGAGCAATACGAGTAAGCTT GGCGGAAGGAAAACGTTCATAA
Protein sequence (LotjaGi6g1v0009100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATAAAAGIASSLFSSSINTNVKCLRSKNCSVLASVSQSYLVEPLSIGGTISHNKLWVPRISAAVAQEEVALAAEADDG LVEEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCY SKRSELETALISLNNVELEGRAIRVSLAEGKRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 273 | 257 | - | – | |
| Gene3D | 64 | 181 | 118 | 2.6E-23 | ||
| PANTHER | 81 | 180 | 100 | 1.3E-52 | – | |
| PANTHER | 81 | 180 | 100 | 1.3E-52 | – | |
| SUPERFAMILY | 100 | 183 | 84 | 3.9E-23 | ||
| ProSiteProfiles | 101 | 179 | 79 | 17.268 | ||
| SMART | 102 | 175 | 74 | 1.2E-21 | ||
| Pfam | 103 | 173 | 71 | 5.2E-14 | ||
| Gene3D | 182 | 273 | 92 | 5.1E-27 | ||
| SUPERFAMILY | 185 | 272 | 88 | 1.29E-27 | ||
| PANTHER | 185 | 271 | 87 | 1.3E-52 | – | |
| PANTHER | 185 | 271 | 87 | 1.3E-52 | – | |
| ProSiteProfiles | 192 | 270 | 79 | 19.604 | ||
| SMART | 193 | 266 | 74 | 5.8E-25 | ||
| Pfam | 194 | 264 | 71 | 1.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0009100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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