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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0009100 |
Transcript ID | LotjaGi6g1v0009100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding family protein; TAIR: AT1G60000.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic; TrEMBL-Plants: tr|I3SDE1|I3SDE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0009100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1732855..1738023) extracted from Lotus japonicus Gifu genome v1.2.
GCGGGAAGTTAAAAAAAAAGAGAAAAAAATTTGTTCAACTTCTAGATATAATTGAGTTGTAAGTGATTTTGTAAACACTG TGAGTTTTTTTTTTCAATACCATATCAGCAACAGTCTAAAGACGTCGAACTTCGTTCATGCATTAGGATATTGTGAGAAG GATATGGTGACTACTAACATACAATATGAGAAATTTAGAGTCCTTGATATAAATCAGAACTCTCAAATTTTTTTCAATTA TGGCCACATATATATGAGATCGGAGTAACACTTGCCTCAAGCATCATACCAATGTCACATTCGGTTTGGCTTTCTTCACC TAAGCCTCCAAGGATGAAAAATATATGATCTCTTATATAATCATGGTCCTCTCTAATTTCTATACGTTCTAAAACTTTTT AATGCAGTCATACATAAGAGTATATTCTTCATCCTTGGGTATAGTTAAAGAAGTACAAGTCCAATGTTACATTGGTATGA TTCTTTGGCAAAATCCAATATTTCTATGACCTTAATTTTAAAAAATATTTGCGTGTCTTGATTTATATCAAGGTATATAT GTTAGTAGTCACCAAATCCTTTCTCACAATTCAGTTGGAAGGCTCTAGGTATTTCTGTTTCAGCCGCAAGGGTTACAATG AAGAGAATGGTTCTAGGGGTTTAGTTCTCCAGCATGGAGGCTCTAGTTGCGAGCAGTGTCTTTGGCTGCGGTGTGAGCCG TAGTGACATGGGCTTGGCCGGAATGTGCTGTGTCTTGGTTGATGAGAGAAGGTACACACACTCTTTATCTATAATTCTTC ATTACTTGTGATATAGCTTCATGGAAATAGGGTTTGCGCAGGTGATTTGAATGGCAGAGGGTGGTTGTCAGGATTTGGTG GTTTGAGTTGAAGAAGGTTTGGGGTTCAAAGGTATGAGATTCTTCATTTGAGTTTCACGGTGCAGGAGCTGGTACTCAAT CGAAGGTTATGGAAACCTAGCTGAAGAAGCGATTTGTGGATATTGTGATAAATGAGAGAATGTATTTTTTGAGTGTTTCT CTTGTTTATTTTCCAAACTTTAGAAATTATTTGAGATTTTTATCATTTCGATGTCTATGAATGTGCGTAACTCAGATGAA CTAATATAATGAATCTTTCATGTCAACACTATTGCATAATACCCATAACCAAGAATTTGATTGGATGAGAAAAATTCTGA AGTAAAAGATGAAAGTGAGTTTACTTGATGTTAGCTTCAAAGCGTTGCTTCTATTGCTTAGAATTTCTGACAAACCTCTC CTGCCCAGCTTCTATGCCTCTCCCAATCACCTCTGTTTTTCTTTTGAGAATCATATCATGAAGGAGGCTATAAGCTTTGG TGCAGGTCTTATTGTGTCTGCCGTCATTGAGAACGAGACGACGATTAGGTTATGACCAGGGTTTAACCTATATAAGGGTG TATTCTCAAAATAATATTTTGTAGGGGCCTTAACCAAAGTACTCATATTTTATAGGGACCTCCAACATATTTAAGCTTAT TTTAAAAAAACTTAACATTATTAATTATATTTTCTTCTTATCTTCCTATGTTAAAAATAGTAGGTAAATTATGTGGTACC TGATTTTTTTTAGGTGTGGTACCCGCATTAAGTAATTTAATAGATTATTATCATGTTATTCAAGGTAAATACTACATCTT TAAATTTTTCTTCACTTGTCAATTAATTTTATCTCACAAAATTCATTTTTTAATGGAAAATGAACGAGTGGTGAAAATGA ATGATGGTGATGGACATGCGCGTAAAAATGATCATGGTTGATGGATAAACAAAGCTCAGAAAACACAACTCGCATATCTC ATGTCCTTACGAATGGAACACTGCATTAATATGATAGAGCAAAATCAAAATTTTAATCGATACATAAGTCTTTATTATTA AACAAACTCATTTTAGATACCATACCTTAATCTGACTTTTAGGTACCACACCAAACACAAAAAAAAATATGTGTTTCTTC AATTTCTACAAGTAAAGTTAATTTTTGAAACAAAGTTGTATCATGCAGTAGTTTAGATTTAGAAAGAGAAGAGATACCCC AAAAAGTTGTGCCCATTACATGCAACAGATAAATAGCACATGAGTGTTTGTACATAGATCATAGATGTTGTATAGGAAAT AGATGCCCTCATCTTATCTTGAGATATCAGATCCTTCCTATATCACTGGACAGTGGACACAATCATGCCACCTCATCACA AAAACAAGACACAATCTACATCTCTCTATCTTTTTCTCTCTCTCTCTCTCTCTCTCATCCCATCTTACTTGTTAAAGTGT CTTTATTACTTACACAGAGTTGCATCACCATTCACCACAATCACAACATGGCTGCCACTGCTGCAGCTGCAGGCATAGCC TCTTCCTTGTTTTCTTCTTCCATCAACACCAATGTCAAATGTCTACGCTCCAAGAACTGCTCCGTGTTGGCATCAGTGTC ACAGTCCTACCTAGTGGAACCTTTGTCCATTGGTGGCACCATCTCACACAACAAGTTGTGGGTTCCTAGAATTTCTGCTG CTGTTGCACAAGAAGAGGTGGCACTGGCTGCTGAGGCAGATGATGGTTTAGTTGAAGAGAAAGTTGAGGAAGTGGTAGCA GAGGAAGAGGCTAATTCTTCTGTCAACACTAAGCTTTATTTTGGGAATTTGCCATACAGTGTTGATAGTGCACAACTTGC AGGGTTGATTGAGGAATATGGTAGTGCTGAACTAATTGAGGTACCTAATTATATATGTAACTCTTATCTATATTATCCCA AGTTATCTACATGAAGTCATGAACCAATTAATAGAATGTTAGTTAGGATCAACTTATTTTCCTGAAAATCAATTTTGGTA ATTAAAAGCTACTAATACTAGCTTCTGCCTAGAATTGATTTTGGCTTTAGAAACAATTGTGGATGGATTTCCAAACATCC ATGCACTGAATTGCTTCAGGTTGGATCAATAAAATTGTGCTGTGCATTTGTGCTCTATGGTTTATGATCTTATGGCTGCA GCCCATTTGATTTTGTTGCATGATGTGATTTAATTGCTGAGGCTTTCTTGGTGATCGGTGTGTAACTTGTGAATGGATGG AGAAAAGTCTGCTTTTTTGGTTGTTGGTCTCAATAATGCATATACATCTATTGTGAATTGATAGAGAGGAAAATAACTTG ATTAAGGAGATGAGTTATATGTAAGGTTTTCATGGGATTCATCACTGGCAATGGAGTTTTTCTGAAAATCTGCAATAAAG TTTGGTGGACTTCTGCTTCATTTAATTACTTTACTTGTTTTGGGTAAATGACTAAATGGTAATTAAGGGTCGATATTAGA ATAGTAGCTTCATGGAAGTAGGTTTCTGTTATTCAGCTTTACAGTTTAAGTCTTTTGTAACTGGGCTCAAGTTTAGATTG TATGTCTAGAATTCGATCCTTGTTGCCCAATTACTCTAATAAAAGAGGAAAATTTTCATACAAGGTTATTGGATTTGTGC ATTGTCCGCACTTCAAGTCCAATCGGCTATTGTGTCTGCGTGAGGGTGCGTGTTAAAAATAAGATATAAAACTATTCATG TGTCTTCACCCTATAGCTTAAGCTTTTGGGATAGTTGGCTCATGGCAATAATTAAGTGAATGATAGACATTGGTGACTTG ATATGAAACTCAGATAAGAGACATCAAATAAGAAATTTTTACTCCATAATTTTTTGCATATGACTTTTCAGTATACATCC CTCAAAGTTGCAAGTCTTTAGAATCCAAATTGCATTTCATGATTTGATTATCCCGTGGTCCGTGGATGTGTTTCATTCCC TGATTTTCAGTTTTGTTAATGATTTATATATATATATATGTATATATATATATATATATCTTTAGGTTCTTTACGACAGG GACTCTGGAAAAAGTAGAGGCTTTGCATTTGTGACGATGAGTTGTGTTGAAGATTGTAATACTGTCATCGAAAATCTTGA TGGAAAAGTAAGAAACACTGCCTATCTTCCTTGTCTACCATATTTTCTCAAATCCTTTTCCATGCTTAATTTTGTAAATG AACTTTTCAGGAGTTCTTGGGCCGAACTTTGCGGGTGAACTTATCTGACAAACCAAAACCAAAAGAACCCTTGTACCCCG AAACTGAGCATAAGCTTTTTGTTGGGAACCTGTCATGGACAGTAACTTCTGAGAGTCTAATACAAGTCTTTCAAGAATAT GGAACCGTGGTCGGAGCCAGGGTCTTATATGATGGGGAAACCGGAAGGTCACGTGGCTATGGATTCGTTTGCTATTCAAA AAGATCTGAATTGGAAACTGCCCTTATATCCCTAAATAATGTGGTATGTTACTTCTCATCTCCTCACTCTTGCGCATTCC ATGTAAACAAGTTTTCTTAATTTTGCTTATTGCTTCTTTAAAAACTGTGGACTTCAGGAACTAGAAGGACGAGCAATACG AGTAAGCTTGGCGGAAGGAAAACGTTCATAAGGTTAACACTTCATAGAAACTTGGGAAGACTCTAGATGTTTACAAATGG CGCTGAAGAAATGAGAAGGCGATGCCCTATATGCATATCCCCATCTTCAGTTTGCTGAGGATTTCCAAATGCTGTTTCAT TGTGTTAAAATCTTTATTGATACTAACATTGGCTATATGTTGCTTCCTTCTTGTCTCACTGGGAATAATACATTGATCAC AGATTCTACTCTAATGTAACATTTCCTATGAAATATTTAGCACCTTAAGGTGTAAAGTATCGCACCATGGTGAAATGACG AGCATCAAATACAAATTTTTGCTGCAGAATTTGTAAATTAGTAACCTTAAGATACAGCAGAACATATAATGTTAGTAGAA TGAAATCATTTTGGTTGCTTGCTTCCTGATGTACATATTTTAAACAGACTAGTGTGCGTGCATATGCTCAACTTTTATTG TGAACTGAAAATTGGTATCGAATCAACAGATAAACGCAATCAAACTACACATATTACCAGCAGAAACATAATATGTTAGT TTTGTAATGATTGCAGTTCTTGGCATGCCAAGAACAATTGCTCCAAGACCTTCCACATTGATGCAGCAGGATATTATAGT GTGGTGAATAAATATCTCTGTTGAAATATTTGTAGAAGTGTTGAGGAAG
CDS sequence (LotjaGi6g1v0009100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCACTGCTGCAGCTGCAGGCATAGCCTCTTCCTTGTTTTCTTCTTCCATCAACACCAATGTCAAATGTCTACG CTCCAAGAACTGCTCCGTGTTGGCATCAGTGTCACAGTCCTACCTAGTGGAACCTTTGTCCATTGGTGGCACCATCTCAC ACAACAAGTTGTGGGTTCCTAGAATTTCTGCTGCTGTTGCACAAGAAGAGGTGGCACTGGCTGCTGAGGCAGATGATGGT TTAGTTGAAGAGAAAGTTGAGGAAGTGGTAGCAGAGGAAGAGGCTAATTCTTCTGTCAACACTAAGCTTTATTTTGGGAA TTTGCCATACAGTGTTGATAGTGCACAACTTGCAGGGTTGATTGAGGAATATGGTAGTGCTGAACTAATTGAGGTTCTTT ACGACAGGGACTCTGGAAAAAGTAGAGGCTTTGCATTTGTGACGATGAGTTGTGTTGAAGATTGTAATACTGTCATCGAA AATCTTGATGGAAAAGAGTTCTTGGGCCGAACTTTGCGGGTGAACTTATCTGACAAACCAAAACCAAAAGAACCCTTGTA CCCCGAAACTGAGCATAAGCTTTTTGTTGGGAACCTGTCATGGACAGTAACTTCTGAGAGTCTAATACAAGTCTTTCAAG AATATGGAACCGTGGTCGGAGCCAGGGTCTTATATGATGGGGAAACCGGAAGGTCACGTGGCTATGGATTCGTTTGCTAT TCAAAAAGATCTGAATTGGAAACTGCCCTTATATCCCTAAATAATGTGGAACTAGAAGGACGAGCAATACGAGTAAGCTT GGCGGAAGGAAAACGTTCATAA
Protein sequence (LotjaGi6g1v0009100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATAAAAGIASSLFSSSINTNVKCLRSKNCSVLASVSQSYLVEPLSIGGTISHNKLWVPRISAAVAQEEVALAAEADDG LVEEKVEEVVAEEEANSSVNTKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCY SKRSELETALISLNNVELEGRAIRVSLAEGKRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 2 | 2 | - | – | |
Phobius | 1 | 16 | 16 | - | – | |
Phobius | 3 | 11 | 9 | - | – | |
Phobius | 12 | 16 | 5 | - | – | |
Phobius | 17 | 273 | 257 | - | – | |
Gene3D | 64 | 181 | 118 | 2.6E-23 | ||
PANTHER | 81 | 180 | 100 | 1.3E-52 | – | |
PANTHER | 81 | 180 | 100 | 1.3E-52 | – | |
SUPERFAMILY | 100 | 183 | 84 | 3.9E-23 | ||
ProSiteProfiles | 101 | 179 | 79 | 17.268 | ||
SMART | 102 | 175 | 74 | 1.2E-21 | ||
Pfam | 103 | 173 | 71 | 5.2E-14 | ||
Gene3D | 182 | 273 | 92 | 5.1E-27 | ||
SUPERFAMILY | 185 | 272 | 88 | 1.29E-27 | ||
PANTHER | 185 | 271 | 87 | 1.3E-52 | – | |
PANTHER | 185 | 271 | 87 | 1.3E-52 | – | |
ProSiteProfiles | 192 | 270 | 79 | 19.604 | ||
SMART | 193 | 266 | 74 | 5.8E-25 | ||
Pfam | 194 | 264 | 71 | 1.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0009100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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