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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0010000 |
Transcript ID | LotjaGi6g1v0010000.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative; TAIR: AT2G30830.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1; TrEMBL-Plants: tr|C6TMC0|C6TMC0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi6g1v0010000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1872879..1876147) extracted from Lotus japonicus Gifu genome v1.2.
TTGATTCTACATTTTGTGATCAGAAAGAAGCAGCAAGCACTGCTATTCAGGTGCTGGTTAACTCACTCTCAACATGGTGG TAAAAAACACAAACCAGTTAGAGGAAGTCACAGATTCCACTCATTATGATAGGGAAGCTGAAGTGAAAGCCTTTGATGAT TCAAAAGCTGGTGTCAAAGGCCTTGTAGAGTGTGGGATAACCAAGATCCCACGCATGTTCCATGCTAACAAGCACTTGGA CATCACTCATGAAAATTCCAAGTTGACTAGTATTCCCCTCATAGACCTCACTGATGAATATTCAGAGGTGATTGGTAAAA TTCGAAGTGCATGTCATGAGTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCCACTAGTGTCTTGGATGAGATGATT GATGGAATCAGGAGGTTTCATGAACAGGATTCTGAGGTTAGAAAAGAGTTTTATTCTAGAGATTTGAAGAAAAAAGCTAT GTATTATTCCAATATTAGCTTGTTTAGTGGCCAAGCTGCTAATTGGAGAGATACATTTGGTTTTGCTGTTGCTCCTGATC CACCTAAACCAGATGAAATACCATTAGTATGCAGGTAATTTGGGGTAAATGCTAATTTTTCAGCTATGCTTTAGATATTG CAGCTTTTCTATTATGTTATGGGTGAGTTTTGGTAAACAGCTTAATTGAAATAAGCTCAAAATTTCTATGCTGTTTGGAA GAGCTTATTTGAGCTTATTCTAGCATATGTGTTCATGCAAGTGTTTGAGAGAGTTTATAAATAGCTTATGACCTACCTGT AAGCTATTTTAAGCTTACTTTCGTTAGTTGTCCAAGTTAGCTTATGAATAAGAGATTATAACCTATAACCTATTTTCAGC TTATTTCAATAAGTTTCTCATTTTAGCTTATGAATAAGCACTTATGCGATAAGTGCTTATTGTAATAAGTGTTTAATTAA TTTATTTACCTATACGCAAAGAAACCACTTTTACAGGTGACCTACTAGTTACTCAAGTTAGAAGAGTTCCCAATCCCAAC AGCTACATTACATGACATGCAATCATATTTCATGATCCTATCCATTTGAATTATTTTAGTAATTGATGAGTTGATTGTGT ACTTGCAGAGATATTGTGATGGAGTATTCAAAAAAAATAAAGGAATTGGGTTTTACAATCCTTGAGCTATTGTCAGAGGG TCTCGGACTGAACCCTTCTTACCTCAAAGAATTGAATTGTGCTGAAGGACTCTTTGTTTTGGGTCACTACTATCCACCAT GCCCTGAACCTAAATTAACTATGGGTACTACCAAGCATACTGATGGTAACTTCATTACATTACTTCTCCAAGACCAACTT GGTGGTCTTCAAATTCTTCATGAGAATCAATGGGTCGATGTTCATCCGGTACATGGTGCTCTGGTTGTAAACATAGGAGA TCTTCTTCAGGTAAATATTACAAGTTACTATTATCAATTTTCATAACTTTCTTTATTTTGATTATCATCTAGGGTAGCAA TCTCCTCAAGTTAGAGACATTCACATCCTGGTAGGACTAGCTCTCTCAGTGATGTTTTTACTGGAAACCTTGTTTGAGAA TTCAGATGGATAAAGCCATTAAAAAATCTCTGAAATTTATTATTCTTTTGATCAATCTCTTAATTTTATATAAACATTGC ATGTGGCCTACCCTTGAGAGGATTGTGAGGAATGTTGACTAAAATTATCAAAATTATCAAACGTGTAAAATATGGCACAT GATTTGCCTCAGTGCTCAAGTATTATATTATCCCTGCTTTGACTATCAGTGGTTCAGATAATCTCAATCAATCACCCTAA TCTTACTTCAGCAAAATATGTACCAATTCAGTTGGACTTTTTCCTTTTAGAAAGCTACAACTTAATATCAGTCACCAATT TGTTTTTATTTAATTGTAGAGAAAATAGTGACACTTTTCCTTGTTGTTTATCAGTCTTGGACTTTTTCCTCCTCTTAACA ATTAGCCTAGCTCTGATCTTCTCGGTCGTTTCTTTTATTAATATTAGTTTAACAAACATATTTCTTGACAATAAAGACAC AATATATAGTTGTTTCTTTTTACATATGACAAGTAAAAATAACTGCTTTTTCTGTCTACTTTTTTTGTTATCCTATGACC ATTGTATATCTGTGATAATAGTCAACTGCTAACACTGACTATTGGTGTCATGAATTGTAACCAGTTTTGTTCTTGAAATT TAAGATTTCTTCTATCTATTCCATCCTTGCTAAAGTTTAATATGAGTATATGGTTAAACCAAATAATTCATCATGAACCA CTTTCTCTGATTGTGTTTTCTTACCCCATAAACCACAGCATGAGACAAGATTATTTACAGGTTTTTCATTGACACAGTTT GTGAGAATAGAGTAATATTTATCAATTTCTTGTGTATTGGTGCAGCTTATCACAAATGACAGGTTTGTCAGTGTTTATCA CCGGGTCTTATCACAGAACATAGGCCCAAGAATTTCTGTAGCAAGCTTCTTTGTGAATTCCCCTGACCCAATTGAAGGTA CATTAAAGGTTTATGGTCCAATAAAGGAACTGCTTACAGAAGAAAACCCACCAATCTACAGGGATGTTACCATCAAAGAT TTCTTGGCACATTATTATGCAAAGGGCCTTGATGGGAACTCTTCCTTGGAGCCCTTCAGGCTGTGAATTGAACATGAGAA TGCACTCTTGATATGATTCCTATGGAGCTGGCTGTAATATACCTAAATAAAATGCCAGTTTCTGGTTTTCCATAATAAGT GACATTTATGTATATGATGTTTTGAAAAAATGAAATAAATGAATAATATGTTTGTTGATTAAATGCATAATGTATGGAAT GAAATGCAAAGGTACCTTGTACTCATTCATGACTTCATGTCATCAAATGTTTATGTACATGAGGTAAAAAGAGAATTAGC TAGAACAAACTAGCTAAGACTGAAACTGAGTTAGTAACTAACCAACTTCTTATAAATACATGTGACCTGTGTAATTAATA CTCCAATACACCCACGAGCTGGAGAGTGAATATTAATCAGTCACAACTTGGAAAGAAGATAAGAGAGAGGTTGAGGATCC AAATTCCAAGGGCTTGGTGAATATGTCTGGTTGATTGGAAGATGAAACCGATATCAAATGGAAGAGCTTGACTGGAAGAG CGGGTTTGTCAAAACTCGATTTAGCAGTAATATGGCGAGCTGATTGGCTATTGCAGTACAGCATAATGA
CDS sequence (LotjaGi6g1v0010000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTAAAAAACACAAACCAGTTAGAGGAAGTCACAGATTCCACTCATTATGATAGGGAAGCTGAAGTGAAAGCCTT TGATGATTCAAAAGCTGGTGTCAAAGGCCTTGTAGAGTGTGGGATAACCAAGATCCCACGCATGTTCCATGCTAACAAGC ACTTGGACATCACTCATGAAAATTCCAAGTTGACTAGTATTCCCCTCATAGACCTCACTGATGAATATTCAGAGGTGATT GGTAAAATTCGAAGTGCATGTCATGAGTGGGGATTTTTCCAGGTGATTAATCATGGAATTCCCACTAGTGTCTTGGATGA GATGATTGATGGAATCAGGAGGTTTCATGAACAGGATTCTGAGGTTAGAAAAGAGTTTTATTCTAGAGATTTGAAGAAAA AAGCTATGTATTATTCCAATATTAGCTTGTTTAGTGGCCAAGCTGCTAATTGGAGAGATACATTTGGTTTTGCTGTTGCT CCTGATCCACCTAAACCAGATGAAATACCATTAGTATGCAGAGATATTGTGATGGAGTATTCAAAAAAAATAAAGGAATT GGGTTTTACAATCCTTGAGCTATTGTCAGAGGGTCTCGGACTGAACCCTTCTTACCTCAAAGAATTGAATTGTGCTGAAG GACTCTTTGTTTTGGGTCACTACTATCCACCATGCCCTGAACCTAAATTAACTATGGGTACTACCAAGCATACTGATGGT AACTTCATTACATTACTTCTCCAAGACCAACTTGGTGGTCTTCAAATTCTTCATGAGAATCAATGGGTCGATGTTCATCC GGTACATGGTGCTCTGGTTGTAAACATAGGAGATCTTCTTCAGCTTATCACAAATGACAGGTTTGTCAGTGTTTATCACC GGGTCTTATCACAGAACATAGGCCCAAGAATTTCTGTAGCAAGCTTCTTTGTGAATTCCCCTGACCCAATTGAAGGTACA TTAAAGGTTTATGGTCCAATAAAGGAACTGCTTACAGAAGAAAACCCACCAATCTACAGGGATGTTACCATCAAAGATTT CTTGGCACATTATTATGCAAAGGGCCTTGATGGGAACTCTTCCTTGGAGCCCTTCAGGCTGTGA
Protein sequence (LotjaGi6g1v0010000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVKNTNQLEEVTDSTHYDREAEVKAFDDSKAGVKGLVECGITKIPRMFHANKHLDITHENSKLTSIPLIDLTDEYSEVI GKIRSACHEWGFFQVINHGIPTSVLDEMIDGIRRFHEQDSEVRKEFYSRDLKKKAMYYSNISLFSGQAANWRDTFGFAVA PDPPKPDEIPLVCRDIVMEYSKKIKELGFTILELLSEGLGLNPSYLKELNCAEGLFVLGHYYPPCPEPKLTMGTTKHTDG NFITLLLQDQLGGLQILHENQWVDVHPVHGALVVNIGDLLQLITNDRFVSVYHRVLSQNIGPRISVASFFVNSPDPIEGT LKVYGPIKELLTEENPPIYRDVTIKDFLAHYYAKGLDGNSSLEPFRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 350 | 348 | 4.9E-123 | – | |
PANTHER | 3 | 350 | 348 | 4.9E-123 | – | |
Gene3D | 24 | 350 | 327 | 2.6E-106 | ||
SUPERFAMILY | 31 | 358 | 328 | 9.61E-94 | – | |
Pfam | 67 | 166 | 100 | 1.3E-18 | ||
ProSiteProfiles | 211 | 313 | 103 | 14.443 | ||
Pfam | 220 | 310 | 91 | 6.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi6g1v0010000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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